mRNA_L-elsbetiae_contig534.13513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Match: D7FQL0_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQL0_ECTSI) HSP 1 Score: 741 bits (1913), Expect = 7.690e-254 Identity = 483/907 (53.25%), Postives = 561/907 (61.85%), Query Frame = 1 Query: 1 ELDSNEDDDEDWFPPARKASGVRHCASTLQQALPTSPAAQRRHYYETRGRDSDSEEKLEEWRDDASSC---VSGSTCSWTCSDDEDTACSSADGFGDRQAMATIVEERERRAGAVDNALSAAPMHASSALLSSLGQHPSSPLSLELISTGSPGRESAISDY----SPKRTFAPSDVLSPEPLVNFRSKTNDGSYTPSSQHFHHSSTAVHEPRARCGCRGLTVRVDYGPLGLSLEASYRIKQGFVLKQTWSDCAVDKGLFAHSVHVQNLPGKRGDDHVSALDLGLEGRSSSSGLIKVRTVGLDSGAVTMASASNTNVNALAGPPLPLRPGITSTKEVGRSVLDGVLEVEEGDILVRVDDVQVTKKSFADVVRLLNEAKRPTRLAFVRHACGRRFVGREKG-GGGGYCGSTAAATRQHSPSRTTPGGSWVGGRRKWRKSGCGCEQPSRAASIGPPVPRSLSPQKSNTRYRQIEAEADGCPVAVLLRARRQLRSGGIGQWHEVVASRGRLWQRLLGTLSPDSHSDRAKLRKLTGSLRSLEEHAVPGTRITGIAKRKLMSNYQRLARNRKSARNSNGCADGDGGKASRALAASVWKDVNRTMSPRRPGGRPGFFSASHLGGGGFVCPAHFAGGSKHAVFRVAYATASTVQFVSGMSYMAALMLVREPEESMAYATLVTLLQERVMQALFPLGDVDLLDAYHLCGGRVVTFRASGASRGPASCEATA----GGGAY--HGRGYRCTERGGIPVDGDGVDSSGDNVDANVHDGGDADRAGGREVCGREEEPTQQVVIGEMLPRLVRAFGKALRRRLPDLHKHLCKQAIPMSFLCAEWFTTAYARSTPLPLALCALDLFLVRLDDVMLRIGLAILEVLAPSLKNMNGFEILLQYGGLTANVCFEEVLRCMLATQ 2679 E DS+E D E WFP R + ++ + L+QALPT+ + RH +T + ++ + +RDD +S S ST S TC+ DE+ S + ATI+ ER + D AL AAP+HASS LLS G P P S E S I D+ SP+ + LSP+P+ FRS+ ++ YT SSQH H SSTA+HEPRARCGCRGLTVR+D GPLGLSLEASYR+ + VLKQ WSDCA D G+FAHS+ V N PGK DD V LDLGL+GRSSSSGLIKVR VGL+ T T V+ G L G S R + GVLE++EGDILVRVD+VQVTKKSF +V LL++A+RPTRL FVRHACGRRFVGR+ G GGGG C A R P R G W G KSGCG +QP A+ +G V S SP+ IE EADGCPVAV+LRARRQLRSGG+ QWHE+VASRG LWQRLL LSPDSHSDR+ GGGG VCPAHFAGG+KHAVFRVA+ATAST+QFVSG+SYMAAL+LV+EP E+MAYATLVTLLQERVMQALFPLGDVDLLDAYHLCGGRVVTFRA GA+R P E A G G Y G+G+R G S ++ + D G ADRA G ++ EEE VV+GEMLPRLVR FGKAL+RRLP LH HLCK+AIPMSFLCAEWFTTAYAR+TPLPLALCALDLFLVRLDDVM+R+GLAILEVLAPSLK +NG EILLQYG LTANV F+EVLRC LATQ Sbjct: 13 EDDSDEGDHETWFPGKRVSRTRQYSSCILRQALPTTSPIKLRHCPQTSNCNYGEADEEQGFRDDNNSTHSYTSESTRSGTCNSDEEPE-SKRENIWGGDTGATIMVERGQHGDDGDIALVAAPVHASSPLLSLPG--PPGPRSREQAGKASSSSTVMIRDHTFSVSPQARDSAPLSLSPQPVAVFRSRNSN--YTRSSQHKH-SSTAIHEPRARCGCRGLTVRIDSGPLGLSLEASYRVGETIVLKQAWSDCAADSGMFAHSMLVSNFPGKVDDDQVRVLDLGLDGRSSSSGLIKVRAVGLERNHAT------TTVHTRQGSMLN---GAPSPPNESRGSVVGVLELDEGDILVRVDNVQVTKKSFTEVASLLDQAERPTRLTFVRHACGRRFVGRDNGYGGGGTC---RGAARHKPPCRVAYCGGWDGCCGMMGKSGCGGKQPPNASCVGRVV-SSPSPK--------IETEADGCPVAVILRARRQLRSGGMEQWHELVASRGHLWQRLLRNLSPDSHSDRS-------------------------------------------------------------------------------------------GGGGHVCPAHFAGGAKHAVFRVAFATASTLQFVSGISYMAALVLVQEPLEAMAYATLVTLLQERVMQALFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEPAARGKSGDGQYPFRGQGHRRMAEGDTRSKVVSAGSPREDKATTIRDTGGADRACGWQMGELEEE----VVVGEMLPRLVRIFGKALKRRLPALHGHLCKEAIPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKMLNGLEILLQYGNLTANVSFQEVLRCALATQ 797
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Match: A0A6H5L6Q0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q0_9PHAE) HSP 1 Score: 722 bits (1864), Expect = 1.050e-246 Identity = 482/909 (53.03%), Postives = 570/909 (62.71%), Query Frame = 1 Query: 7 DSNEDDDEDWFPPARKASGVRHCAST-LQQALPTSPAAQRRHYYETRGRDSDSEEKLEEWRDDA--SSCVSGSTCSWTCSDDEDTACSSADGFGDRQAMATIVEERERRAGAVDNALSAAPMHASSALLSSLGQHPSSPLSLE-----LISTGSPGRESAISDYSPKRTFAPSDVLSPEPLVNFRSKTNDGSYTPSSQHFHHSSTAVHEPRARCGCRGLTVRVDYGPLGLSLEASYRIKQGFVLKQTWSDCAVDKGLFAHSVHVQNLPGKRGDDHVSALDLGLEGRSSSSGLIKVRTVGLDSGAVTMASASNTNVNALAGPPLPLRPGITSTKEVGRSVLDGVLEVEEGDILVRVDDVQVTKKSFADVVRLLNEAKRPTRLAFVRHACGRRFVGREKGGGGGYCGSTAAATRQHSPSRTTPGGSWVGGRRKWRKSGCGCEQPSRAASIGPPVPRSLSPQKSNTRYRQIEAEADGCPVAVLLRARRQLRSGGIGQWHEVVASRGRLWQRLLGTLSPDSHSDRAKLRKLTGSLRSLEEHAVPGTRITGIAKRKLMSNYQRLARNRKSAR---NSNGCADGDGGKASRALAASVWKDVNRTMSPRRPGGRPGFFSASHLGGGGFVCPAHFAGGSKHAVFRVAYATASTVQFVSGMSYMAALMLVREPEESMAYATLVTLLQERVMQALFPLGDVDLLDAYHLCGGRVVTFRASGASRGPASCEATAGGGAYHGRGYRCTERGGIPV-DGDG---VDSSGD---NVDANVHDGGDADRAGGREVCGREEEPTQQVVIGEMLPRLVRAFGKALRRRLPDLHKHLCKQAIPMSFLCAEWFTTAYARSTPLPLALCALDLFLVRLDDVMLRIGLAILEVLAPSLKNMNGFEILLQYGGLTANVCFEEVLRCMLATQ 2679 DS+++ D + + P ++ S RH +S L+QALPT+ + RH +T + + +E+ + D++ S+ STCS T S DE+ A + +G + E + D AL AAP+HASS LLS G P SP S + L S+ R+ +S S R AP SP+P+ FRS+ ++ YTP+SQ HHSSTA+HEPRARCGCRGLTVRVD GPLGLSLEASYR+ + VLKQ WSDCA D G+FAHS+ V N+PGK DD LD L+GR SSSGLIKVR VGL+ TM + N L G P P ++ GR V GVLE++EGDILVRVD+VQ P A+ +G V S SP+ IE EADGCPVAV+LRARRQLRSGG+ QW+E VASR RLWQRLL LSPDSHSDRAKLRKL RS + HA + G+ K KL +NYQRL +RK R N++GC KA RALAA VWKDVNRTMSPRR G RPGFFSAS LGGGG VCPAHFAGGSKHAVFRVA+ATAST+QFVSGMSYMAAL+LV+EP E+MAYATLVTLLQ ALFPLGDVDLLDAYHLCGGRVVTFRA GA+R P EA A G + G+ Y +G + + +GD V S+G + + D ADRA G E+ EEE VV+ EMLPRLVR FGKAL+RRLP LH HLCK+A+PMSFLCAEWFTTAYAR+TPLPLALCALDLFLVRLDDVM+R+GLAILEVLAPSLK +NG EILLQYG LTANV F+EVLRC LATQ Sbjct: 14 DSSDEGDHETWSPGKRVSRTRHYSSCILRQALPTTSPIKLRHCQQTSNCNGEPDEEQDSRNDNSTHSNTSEQSTCSGTYSSDEEPASRRKNIWGGDTGATIMAERGQHHGDDGDIALVAAPVHASSPLLSLPG--PPSPRSRKQAGKVLGSSAVMNRDHTLSVSSQARDPAPLSP-SPQPVAVFRSRNSN--YTPTSQPNHHSSTAIHEPRARCGCRGLTVRVDSGPLGLSLEASYRVGETLVLKQAWSDCAADSGMFAHSMLVSNVPGKVDDDQARVLDPWLDGRLSSSGLIKVRAVGLERDHATMTVRTRQG-NILNGAPSP------PSESRGRVV--GVLELDEGDILVRVDNVQ----------------------------------------------------------------------------------PPNASCVGRLV-SSPSPK--------IETEADGCPVAVILRARRQLRSGGMEQWYEAVASRRRLWQRLLRNLSPDSHSDRAKLRKLVVCSRSADGHA-----LKGLVKCKLRNNYQRLISSRKGLRKSSNTDGC-----NKAKRALAAKVWKDVNRTMSPRRHGARPGFFSASQLGGGGHVCPAHFAGGSKHAVFRVAFATASTLQFVSGMSYMAALVLVQEPVEAMAYATLVTLLQ-----ALFPLGDVDLLDAYHLCGGRVVTFRAFGAARSPTPSEAAARGESGDGQ-YPFPGQGHLRMAEGDTRSKVVSAGSLRKDKATTIRDTDGADRACGWEIGELEEE----VVVDEMLPRLVRIFGKALKRRLPALHGHLCKEAVPMSFLCAEWFTTAYARNTPLPLALCALDLFLVRLDDVMIRLGLAILEVLAPSLKTLNGLEILLQYGNLTANVSFQEVLRCALATQ 797
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Match: A0A421EX14_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EX14_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 7.700e-9 Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 1 Query: 2362 FGKALRRRLPDLHKHLCKQAIPMSFLCAEWFTTAYARSTPLPLALCALDLFLVRLDDVMLRIGLAILEVLAPSLKNMNGFEILLQYGGLTANVCFEEVLRCMLATQP 2682 F + R LP LH HL Q + EWFTT ++ ST LA DLF V L DV LR+GLAIL++L L M+ + L ++ L + +V+ LA QP Sbjct: 49 FEQMFIRDLPKLHAHLMVQGFAVPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGLQDVFLRVGLAILKLLEAKLMCMSFEDFLREFKPLVRELDPYQVILQALALQP 155
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Match: K3WQH6_GLOUD (Rab-GAP TBC domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQH6_GLOUD) HSP 1 Score: 65.1 bits (157), Expect = 4.360e-7 Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1 Query: 2362 FGKALRRRLPDLHKHLCKQAIPMSFLCAEWFTTAYARSTPLPLALCALDLFLVRLDDVMLRIGLAILEVLAPSLKNMNGFEILLQYGGLTANV 2640 F +R LPDLH+H+ Q + EWFTT ++ ST LA DLF V + D+ LR+GLAIL++L L M + L ++ L + Sbjct: 185 FNLMFQRELPDLHQHILSQGFVIPMYGIEWFTTLFSLSTKADLACAIFDLFFVGVQDIFLRMGLAILKLLESKLMCMTFEDFLREFKPLVRQI 277
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Match: A0A3F2S3X1_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3X1_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.220e-6 Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 1 Query: 2362 FGKALRRRLPDLHKHLCKQAIPMSFLCAEWFTTAYARSTPLPLALCALDLFLVRLDDVMLRIGLAILEVLAPSLKNMNGFEILLQY 2619 F + R LP LH HL Q + EWFTT ++ ST LA DLF V L DV LR+GLAIL++L L M+ + L ++ Sbjct: 185 FEQMFIRDLPKLHAHLMVQGFTVPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGLQDVFLRVGLAILKLLEAKLMCMSFEDFLREF 270
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Match: A0A662WPF7_9STRA (Rab-GAP TBC domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPF7_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.310e-6 Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 1 Query: 2362 FGKALRRRLPDLHKHLCKQAIPMSFLCAEWFTTAYARSTPLPLALCALDLFLVRLDDVMLRIGLAILEVLAPSLKNMNGFEILLQYGGLTANVCFEEVLRCMLATQPRQD 2691 F RR LP LH HL Q + EWFTT ++ ST LA DLF V + D+ LR+GLAIL++L L M + L ++ L + +V+ L +P + Sbjct: 202 FEVMFRRDLPKLHAHLLAQGFALPMYGIEWFTTLFSLSTKTDLACAIFDLFFVGVQDIFLRVGLAILKLLEAKLMCMTCEDFLREFKLLVRELDPYQVILQALVLRPNPE 311
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Match: A0A5D6XX98_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX98_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 3.960e-6 Identity = 35/93 (37.63%), Postives = 49/93 (52.69%), Query Frame = 1 Query: 2362 FGKALRRRLPDLHKHLCKQAIPMSFLCAEWFTTAYARSTPLPLALCALDLFLVRLDDVMLRIGLAILEVLAPSLKNMNGFEILLQYGGLTANV 2640 F +R LPDLH+HL Q + EWFTT ++ ST LA DLF V + D+ LR+GLAIL++ L M + L ++ L + Sbjct: 262 FNLMFQRELPDLHQHLLAQGFVIPMYGIEWFTTLFSLSTKPDLACAIFDLFFVGVQDIFLRMGLAILKLSEAKLMCMTFEDFLKEFKPLVRQI 354 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig534.13513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig534.13513.1 >prot_L-elsbetiae_contig534.13513.1 ID=prot_L-elsbetiae_contig534.13513.1|Name=mRNA_L-elsbetiae_contig534.13513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=826bp MATIVEERERRAGAVDNALSAAPMHASSALLSSLGQHPSSPLSLELISTGback to top mRNA from alignment at L-elsbetiae_contig534:11550..18970- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig534.13513.1 ID=mRNA_L-elsbetiae_contig534.13513.1|Name=mRNA_L-elsbetiae_contig534.13513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7421bp|location=Sequence derived from alignment at L-elsbetiae_contig534:11550..18970- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig534:11550..18970- >mRNA_L-elsbetiae_contig534.13513.1 ID=mRNA_L-elsbetiae_contig534.13513.1|Name=mRNA_L-elsbetiae_contig534.13513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4956bp|location=Sequence derived from alignment at L-elsbetiae_contig534:11550..18970- (Laminarionema elsbetiae ELsaHSoW15)back to top |