prot_L-elsbetiae_contig5338.13509.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5338.13509.1
Unique Nameprot_L-elsbetiae_contig5338.13509.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length430
Homology
BLAST of mRNA_L-elsbetiae_contig5338.13509.1 vs. uniprot
Match: D7FZW1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW1_ECTSI)

HSP 1 Score: 469 bits (1208), Expect = 1.460e-157
Identity = 258/440 (58.64%), Postives = 306/440 (69.55%), Query Frame = 0
Query:    4 QINFASSIYVLYMAFLVVVTPPFIVYGAKWNQRVFDCLANVNKPLWIAFIVIAWYAHELFQSIVNSSLYKVIWGNFLEDPCWADPDFLVNTSLVIRDTCTDIASAQNLFNQAAANYRYYDQVETTWLAVVPTDAEGPFYGDPEVDFPQDFPGNCSATALLSAIQPGDGSVDWWSLFFHSGALVALLLQLVLAHWFLSWFAVLRPLTMHRGRVMIP--ESSQGDQALYREVRAFARRRAILPFVFTTGLLIFLLINLGSSSSDKDMPRKVLIGALFLAFLQFGVIPLLVWRPADERVVPVSKFVASHRLGPGGXXXXXXXXXXXAAPERGREEHPKWEDEEEEGGGHNPMFSGNGNHEVRHASPYDEQHQDHEYRYALDDGDE---------------RRQEQKVEVARVGSSDSLSSILQSALAATANAAAVGEGRSQSR 426
            +INFASSIYVLY+ F V+V PPFIVYGAKWN R+F+ L+NVNKP+WIA IV+ WY HELFQSI+NSSLY +IW NFL+DPCWADP+FLVNTS+VI +TCT+I SA NLFNQA ANYRYY  VETTW  +     +GPFYGD +VDFPQ+FPGNC+++ LLSAIQPGDG+V+WWSLFF SGALVALLLQ+ LAHWF+SWF+VLRPLTMH+GRVMIP  E++Q D  L+REVRAFARRRAILPFVF T LL+FLLINLG SSS + M RKVLIG+  L  LQF V+PLLVWRP+DER +P +         P             A       E   ++D+EE G       SGN              H+D +Y                        +RQEQK+E  R  S DSLSSIL +A+AAT+ AAAVGEGR   R
Sbjct:  257 RINFASSIYVLYLVFTVLVPPPFIVYGAKWNVRIFEVLSNVNKPMWIALIVLVWYGHELFQSIINSSLYNIIWSNFLQDPCWADPEFLVNTSMVISETCTEIISASNLFNQAGANYRYYGAVETTWQPISEGRTDGPFYGDADVDFPQEFPGNCTSSVLLSAIQPGDGNVNWWSLFFRSGALVALLLQITLAHWFISWFSVLRPLTMHKGRVMIPNPETNQSDPVLFREVRAFARRRAILPFVFMTLLLLFLLINLGVSSSAEGMGRKVLIGSAILFALQFVVVPLLVWRPSDERWLPAAAM-------PPDNDGSLREDYTDAG------ESDSYDDKEEGG-----WDSGNDKEPGSSLPRNRHSHRDDDYPXXXXXXXXXXXXXXXXXXRSRTPQRQEQKLE--RSDSGDSLSSILAAAMAATSAAAAVGEGRQPPR 676          
BLAST of mRNA_L-elsbetiae_contig5338.13509.1 vs. uniprot
Match: A0A2V3J5J9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5J9_9FLOR)

HSP 1 Score: 80.5 bits (197), Expect = 1.580e-12
Identity = 64/268 (23.88%), Postives = 120/268 (44.78%), Query Frame = 0
Query:    4 QINFASSIYVLYMAFLVVVTPPFIVYGAKWNQRVFDCLANVNKPLWIAFIVIAWYAHELFQSIVNSSLYKVIWGNFLEDPCWADPDFLVNTSLVIRDTCTDIA--SAQNLFNQAAANYRYYD-------QVETTWLAVVPT----DAEGPFYGDPEVDFPQDFPGNCSATAL--LSAIQPGDGSVDWWSLFFHSGALVALLLQLVLAHWFLSWFAVLRPLTMHRGRVMI------PESSQGDQALYREVRAFARRRAILPFVFTTGLL 250
            Q++ A+  +++Y    V+V  P ++   +   RV      + K  ++   +I    ++    I   + +  ++ NFL DPC+ +PDF      +I D C +I+    Q+ +     +  YYD       + +   LAV P     D     Y +  +      PG C+AT L   +++ P +     W     SG +  LLL++V   W + + + + P+ +H G+V +         S+ D+   + +R FAR + +LP +F + LL
Sbjct:  354 QVDLAADCFIVYSVVSVLVGIPLVISKREKTSRVVGATLGLTKMTFVMVFIILLSLYDSAFLIFRDTDFPRMFQNFLNDPCYVNPDFSARRVGMIVDVCNNISYIDQQSDYILQRMDRVYYDTRLFGHCKDDDRELAVHPKLKAMDKIRKMYREGNIS----NPGICNATELDTRTSVAPENERTSKWKALMGSGVVAQLLLKIVFTGWIIHFLSFIEPMVLHSGKVELWGVKSRTSLSEEDE---KAIRRFARDKHLLPLIFFSTLL 614          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5338.13509.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZW1_ECTSI1.460e-15758.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2V3J5J9_9FLOR1.580e-1223.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..204
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 61..177
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 239..258
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 259..269
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 270..290
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 205..238
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 291..429
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..60
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 271..290
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
NoneNo IPR availableTMHMMTMhelixcoord: 239..261

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5338contigL-elsbetiae_contig5338:2068..12537 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5338.13509.1mRNA_L-elsbetiae_contig5338.13509.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5338 2068..12537 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5338.13509.1 ID=prot_L-elsbetiae_contig5338.13509.1|Name=mRNA_L-elsbetiae_contig5338.13509.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=430bp
VLVQINFASSIYVLYMAFLVVVTPPFIVYGAKWNQRVFDCLANVNKPLWI
AFIVIAWYAHELFQSIVNSSLYKVIWGNFLEDPCWADPDFLVNTSLVIRD
TCTDIASAQNLFNQAAANYRYYDQVETTWLAVVPTDAEGPFYGDPEVDFP
QDFPGNCSATALLSAIQPGDGSVDWWSLFFHSGALVALLLQLVLAHWFLS
WFAVLRPLTMHRGRVMIPESSQGDQALYREVRAFARRRAILPFVFTTGLL
IFLLINLGSSSSDKDMPRKVLIGALFLAFLQFGVIPLLVWRPADERVVPV
SKFVASHRLGPGGPGGSGGFAGAAAAPERGREEHPKWEDEEEEGGGHNPM
FSGNGNHEVRHASPYDEQHQDHEYRYALDDGDERRQEQKVEVARVGSSDS
LSSILQSALAATANAAAVGEGRSQSRRFP*
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