mRNA_L-elsbetiae_contig5328.13493.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5328.13493.1
Unique NamemRNA_L-elsbetiae_contig5328.13493.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5328.13493.1 vs. uniprot
Match: D8LJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.380e-7
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   40 GHQAQVKCLSIDSRGELLVSGDESGSICARLLHPRQSHSSSPRGWGT 180
            G + +V CLSID RGELLV+GDESG+ICARLLH    HS +  G GT
Sbjct:   12 GRRQKVGCLSIDRRGELLVTGDESGAICARLLH----HSGNRSGDGT 54
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BLAST of mRNA_L-elsbetiae_contig5328.13493.1 vs. uniprot
Match: A0A6H5L2I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.680e-6
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   55 VKCLSIDSRGELLVSGDESGSICARLLHPRQSHSSSPRGWGT 180
            V CLSID RGELLV+GDESG+ICARLLH    HS +  G GT
Sbjct:    5 VGCLSIDRRGELLVTGDESGAICARLLH----HSGNRSGDGT 42
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5328.13493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJE2_ECTSI1.380e-763.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2I0_9PHAE1.680e-669.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5328contigL-elsbetiae_contig5328:857..1699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816552.5738018-CDS-L-elsbetiae_contig5328:856..10481622816552.5738018-CDS-L-elsbetiae_contig5328:856..1048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 857..1048 -
1691683642.3180265-CDS-L-elsbetiae_contig5328:856..10481691683642.3180265-CDS-L-elsbetiae_contig5328:856..1048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 857..1048 -
1622816552.5850134-CDS-L-elsbetiae_contig5328:1645..16991622816552.5850134-CDS-L-elsbetiae_contig5328:1645..1699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 1646..1699 -
1691683642.328843-CDS-L-elsbetiae_contig5328:1645..16991691683642.328843-CDS-L-elsbetiae_contig5328:1645..1699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5328 1646..1699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5328.13493.1prot_L-elsbetiae_contig5328.13493.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5328 857..1699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5328.13493.1

>prot_L-elsbetiae_contig5328.13493.1 ID=prot_L-elsbetiae_contig5328.13493.1|Name=mRNA_L-elsbetiae_contig5328.13493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
LGLVDGSRVVALDGHQAQVKCLSIDSRGELLVSGDESGSICARLLHPRQS
HSSSPRGWGTGDTGHRGQELGAAATVDGGLGA
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mRNA from alignment at L-elsbetiae_contig5328:857..1699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5328.13493.1 ID=mRNA_L-elsbetiae_contig5328.13493.1|Name=mRNA_L-elsbetiae_contig5328.13493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=843bp|location=Sequence derived from alignment at L-elsbetiae_contig5328:857..1699- (Laminarionema elsbetiae ELsaHSoW15)
CTCGGCTTGGTGGACGGCTCGAGGGTGGTGGCGTTGGACGGGCACCAGGC
GCAGGCAAGATGCACGGATGGTACATGCACTGCACGCGTGAATGCATGCA
CGTGGGGAGGGAGGCAGGGGGGATGGTTTGCCCGTGTTGTCTCTGCGGTG
TGGGCATATGTAGAACTACGATGTACACACACGTTTGCTCGTGATCGTCT
TTTGTGGTGTCCCTTGGAAGAAAATTAATTACATACCTTCGAAGTATACA
TGTATGTATGTATGTTCTAACGAATCTAGTCTAGAAGCATTCCTGTGTAA
CTTGCGCACGCGCGGAAGTGCATGCGACTGTTTTCATCGTGAAAGTAGAC
TGCGGAGCTGAGGTCGTTGCTTCCAATTGCATCGTCCTTGTTCTTGCTGC
CGACGCCGGCGGCTGCCCCAGTCCCACTTGATTGCGTTCGGTGTGGTTTC
ATTTCGAGTGTATTCCACGATGTAGTGGTGACCCCAAGAGTTGCCCCTTC
TGACATGATGCCATAGGACACCGATACGATACCATAGGATACGACTTAGA
GTACAAGTGGCAGTCTCCTCTGGTCTAGAACAGGCTCCGGCTCCTCTTCC
ACGAGGATCATTGTAAACGTTTTGCTTTTTGCAATACACTCGTCATTGCA
GGTAAAATGCTTGTCGATCGACAGCCGAGGTGAGCTCTTGGTCAGCGGAG
ACGAGTCTGGCTCCATCTGCGCCCGCCTCCTACACCCGAGACAGAGTCAC
TCTAGTAGCCCACGAGGCTGGGGCACGGGAGACACAGGGCACCGAGGCCA
AGAGCTTGGTGCCGCTGCCACTGTGGACGGAGGACTAGGGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5328:857..1699-

>mRNA_L-elsbetiae_contig5328.13493.1 ID=mRNA_L-elsbetiae_contig5328.13493.1|Name=mRNA_L-elsbetiae_contig5328.13493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig5328:857..1699- (Laminarionema elsbetiae ELsaHSoW15)
CTCGGCTTGGTGGACGGCTCGAGGGTGGTGGCGTTGGACGGGCACCAGGC
GCAGCTCGGCTTGGTGGACGGCTCGAGGGTGGTGGCGTTGGACGGGCACC
AGGCGCAGGTAAAATGCTTGTCGATCGACAGCCGAGGTGAGCTCTTGGTC
AGCGGAGACGAGTCTGGCTCCATCTGCGCCCGCCTCCTACACCCGAGACA
GAGTCACTCTAGTAGCCCACGAGGCTGGGGCACGGGAGACACAGGGCACC
GAGGCCAAGAGCTTGGTGCCGCTGCCACTGTGGACGGAGGACTAGGGGCA
GTAAAATGCTTGTCGATCGACAGCCGAGGTGAGCTCTTGGTCAGCGGAGA
CGAGTCTGGCTCCATCTGCGCCCGCCTCCTACACCCGAGACAGAGTCACT
CTAGTAGCCCACGAGGCTGGGGCACGGGAGACACAGGGCACCGAGGCCAA
GAGCTTGGTGCCGCTGCCACTGTGGACGGAGGACTAGGGGCA
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