Homology
BLAST of mRNA_L-elsbetiae_contig530.13457.1 vs. uniprot
Match:
D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)
HSP 1 Score: 52.4 bits (124), Expect = 3.810e-5
Identity = 37/75 (49.33%), Postives = 45/75 (60.00%), Query Frame = 2
Query: 92 PKVVRMLVEAGADTATAVQLRITPGGKIRFNVTPLALTNLYLRTSKSATCNASGKALHTEEELNELEGTRRLLLQ 316
P++VRMLV+AGADT + VQ+ GG + FN TPLA T L LR A GK T+E L LE RLLL+
Sbjct: 398 PRIVRMLVDAGADTTSPVQVMNLKGGVV-FNDTPLAFTKLRLRKK----IVADGKPA-TKEHLQRLEAICRLLLR 466
BLAST of mRNA_L-elsbetiae_contig530.13457.1 vs. uniprot
Match:
D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)
HSP 1 Score: 51.2 bits (121), Expect = 6.440e-5
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query: 92 PKVVRMLVEAGADTATAVQLRITPGGKIRFNVTPLALTNLYLRTSKSATCNASGKALHTEEELNELEGTRRLLLQ 316
P++VR+LV+AGADT + V++ GG + +N TPLA+T LR GK TEE+L+ L+ RRLLL+
Sbjct: 78 PRIVRLLVDAGADTTSTVRVTNLNGG-VEYNDTPLAVTTSLLREKV-----VDGKPA-TEEQLHRLQAIRRLLLR 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig530.13457.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 3.81e-5 / Id = 49.33 Expect = 6.44e-5 / Id = 44.00 Sequence D7FT11_ECTSI D8LSC5_ECTSI
Match Name E-value Identity Description
D7FT11_ECTSI 3.810e-5 49.33 EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LSC5_ECTSI 6.440e-5 44.00 EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 2
Model size 423
Cds size 309
Stop 1
Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816548.869532-UTR-L-elsbetiae_contig530:12225..12331 1622816548.869532-UTR-L-elsbetiae_contig530:12225..12331 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig530 12226..12331 +
1691683639.612687-UTR-L-elsbetiae_contig530:12225..12331 1691683639.612687-UTR-L-elsbetiae_contig530:12225..12331 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig530 12226..12331 +
1622816548.9011645-UTR-L-elsbetiae_contig530:13248..13256 1622816548.9011645-UTR-L-elsbetiae_contig530:13248..13256 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig530 13249..13256 +
1691683639.6467354-UTR-L-elsbetiae_contig530:13248..13256 1691683639.6467354-UTR-L-elsbetiae_contig530:13248..13256 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig530 13249..13256 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816548.8801486-CDS-L-elsbetiae_contig530:12331..12541 1622816548.8801486-CDS-L-elsbetiae_contig530:12331..12541 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig530 12332..12541 +
1691683639.625024-CDS-L-elsbetiae_contig530:12331..12541 1691683639.625024-CDS-L-elsbetiae_contig530:12331..12541 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig530 12332..12541 +
1622816548.8909647-CDS-L-elsbetiae_contig530:13149..13248 1622816548.8909647-CDS-L-elsbetiae_contig530:13149..13248 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig530 13150..13248 +
1691683639.6361992-CDS-L-elsbetiae_contig530:13149..13248 1691683639.6361992-CDS-L-elsbetiae_contig530:13149..13248 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig530 13150..13248 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig530.13457.1
>prot_L-elsbetiae_contig530.13457.1 ID=prot_L-elsbetiae_contig530.13457.1|Name=mRNA_L-elsbetiae_contig530.13457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MLVEAGADTATAVQLRITPGGKIRFNVTPLALTNLYLRTSKSATCNASGK ALHTEEELNELEGTRRLLLQELSEALTGTAHSTRTMVSPVRFAVGRSGAW TL* back to top mRNA from alignment at L-elsbetiae_contig530:12226..13256+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig530.13457.1 ID=mRNA_L-elsbetiae_contig530.13457.1|Name=mRNA_L-elsbetiae_contig530.13457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1031bp|location=Sequence derived from alignment at L-elsbetiae_contig530:12226..13256+ (Laminarionema elsbetiae ELsaHSoW15)AGGAAAACTGACGGTGGGGATGCGTTGTACGTGAGCACTCGCAATCTGTT
TGGCTGCACGTCGTTATGCCGTAGCTAGCCGCCGTTCCACGCCCAAGGTT
GTGCGG ATGCTCGTTGAAGCTGGAGCAGACACTGCGACGGCCGTTCAGCT
CAGAATCACTCCCGGTGGTAAGATCCGATTCAACGTCACCCCTCTGGCTC
TCACGAATCTTTACCTCCGTACAAGCAAGTCCGCGACATGCAATGCCTCG
GGGAAGGCGCTGCATACGGAGGAGGAGCTGAACGAGCTGGAGGGCACCCG
CCGCTTGCTGTTGCAG GTGAAGGCTGTTCATGCGATGTCCTGGTTGTAGC
ATGTCGATATCCCTTGCATCATCAACACCGCAGAGGAAAAATGTAAGGAC
AAGATCACTTCGACATCGCTGAGACTGACTCTGCCGATACTGAGGCGACG
GGTGATGAGGCTGGGTATGCTCTTGGCGACCCTGCCGTGATGCCGTGTCA
GGTCATTGTTTGACTCCTGGTTTTTGGTTTGTGTTCATGTGCCACCTGCA
GTACCCTACTCAATAGTGTATTTTATTCTGTGTTTCCTGTATCCAGAAGT
TGCGCAGCGTGTCCATGCTCGTTTTCGCGGTCAGAACGGCACTACGTACT
GTGCTTGTCGCACCGTGGTGTCAGGAGGCTTGTCAAGTCTTCCATACGCC
TTGCGCCTCAGAAAGTATCCTTGGGCGTATCTTTCCGGAAGAGGAACGAC
GATATCGTTTTTCCCTGACGGCTTCGTCCTTCGAAAAAAACGGAGGGGGT
GTCGATTAACTTGTTCAGTAGAGTCTGCCCTCATCAATATCCATAATAAT
CTAAGCTATCTGGTCTGCTCTTTGCTACGTGTGGCTGTCCGCCTTTGGCT
TGCCACCCCTGCATCGGTTTGTAGGAACTCAGCGAAGCCTTGACTGGGAC
TGCTCACTCGACTCGGACCATGGTGTCACCTGTTCGTTTTGCCGTCGGGC
GGAGCGGCGCATGGACTCTCTAG TAGGTCTA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig530:12226..13256+
>mRNA_L-elsbetiae_contig530.13457.1 ID=mRNA_L-elsbetiae_contig530.13457.1|Name=mRNA_L-elsbetiae_contig530.13457.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig530:12226..13256+ (Laminarionema elsbetiae ELsaHSoW15) ATGCTCGTTGAAGCTGGAGCAGACACTGCGACGGCCGTTCAGCTCAGAAT CACTCCCGGTGGTAAGATCCGATTCAACGTCACCCCTCTGGCTCTCACGA ATCTTTACCTCCGTACAAGCAAGTCCGCGACATGCAATGCCTCGGGGAAG GCGCTGCATACGGAGGAGGAGCTGAACGAGCTGGAGGGCACCCGCCGCTT GCTGTTGCAGATGCTCGTTGAAGCTGGAGCAGACACTGCGACGGCCGTTC AGCTCAGAATCACTCCCGGTGGTAAGATCCGATTCAACGTCACCCCTCTG GCTCTCACGAATCTTTACCTCCGTACAAGCAAGTCCGCGACATGCAATGC CTCGGGGAAGGCGCTGCATACGGAGGAGGAGCTGAACGAGCTGGAGGGCA CCCGCCGCTTGCTGTTGCAGGAACTCAGCGAAGCCTTGACTGGGACTGCT CACTCGACTCGGACCATGGTGTCACCTGTTCGTTTTGCCGTCGGGCGGAG CGGCGCATGGACTCTCTAGGAACTCAGCGAAGCCTTGACTGGGACTGCTC ACTCGACTCGGACCATGGTGTCACCTGTTCGTTTTGCCGTCGGGCGGAGC GGCGCATGGACTCTCTAG back to top