mRNA_L-elsbetiae_contig523.13339.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig523.13339.1
Unique NamemRNA_L-elsbetiae_contig523.13339.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig523.13339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig523contigL-elsbetiae_contig523:17480..18488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig523.13339.1prot_L-elsbetiae_contig523.13339.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig523 17480..18488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816537.3742917-CDS-L-elsbetiae_contig523:17479..176271622816537.3742917-CDS-L-elsbetiae_contig523:17479..17627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 17480..17627 -
1691683631.2848449-CDS-L-elsbetiae_contig523:17479..176271691683631.2848449-CDS-L-elsbetiae_contig523:17479..17627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 17480..17627 -
1622816537.3856373-CDS-L-elsbetiae_contig523:17993..181371622816537.3856373-CDS-L-elsbetiae_contig523:17993..18137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 17994..18137 -
1691683631.2945857-CDS-L-elsbetiae_contig523:17993..181371691683631.2945857-CDS-L-elsbetiae_contig523:17993..18137Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 17994..18137 -
1622816537.3966324-CDS-L-elsbetiae_contig523:18318..184881622816537.3966324-CDS-L-elsbetiae_contig523:18318..18488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 18319..18488 -
1691683631.3050988-CDS-L-elsbetiae_contig523:18318..184881691683631.3050988-CDS-L-elsbetiae_contig523:18318..18488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig523 18319..18488 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig523.13339.1

>prot_L-elsbetiae_contig523.13339.1 ID=prot_L-elsbetiae_contig523.13339.1|Name=mRNA_L-elsbetiae_contig523.13339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
CPEGSYSLGRQQACTPCQAGYYCTNPATAESFPCATGTFSVGGKHQCTDC
PAGYTCSSRSTDQSEQCGLGYYSLQGEPLCTPCPAGSRCPLPQDSPIACD
PGYYSTEASTNCTSCPAGYFCDDPEAAPQPCEVGFYSGGGSAVCLACQPG
YHCP
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mRNA from alignment at L-elsbetiae_contig523:17480..18488-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig523.13339.1 ID=mRNA_L-elsbetiae_contig523.13339.1|Name=mRNA_L-elsbetiae_contig523.13339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1009bp|location=Sequence derived from alignment at L-elsbetiae_contig523:17480..18488- (Laminarionema elsbetiae ELsaHSoW15)
TGCCCCGAAGGATCCTATTCGCTAGGGCGCCAGCAAGCGTGCACGCCGTG
CCAGGCTGGCTACTATTGCACCAACCCTGCCACTGCCGAAAGCTTTCCAT
GTGCGACGGGGACGTTTTCAGTTGGCGGCAAGCATCAGTGCACCGATTGC
CCAGCCGGATACACTTGCAGGTACTCTTCACACTGTGCTGCACAATACGA
CGAGTGTGACCTTTGGTGGTGGTCCGGTGGTCCAAGATTCACTGCACGTC
TACGCGGAGAGATCATGTGTGTATCTCGTCAACATGCATTTTCAACCCGC
GGCACGCAACCCCCTGCCCACATTGGCTTGCACACTACCCAACTAAAACA
GTTCCAGGTCGACCGATCAAAGTGAGCAGTGCGGGTTGGGGTACTACAGC
CTTCAGGGCGAGCCTCTCTGCACTCCCTGCCCGGCGGGCTCCCGCTGCCC
CCTCCCACAGGACAGCCCAATTGCCTGCGATCCCGGGTACTACAGGTACA
GTCAAGCGGCACCGACACGGCTGTGGTTATCAATACAGCTCCAACATGTT
GCTCTTTTGTTCACGCACGAAGGCTGTATATGGCGTGTACTGGAGGTGCA
GGTTCCCGTCGTTGTTGCCGTTGCCACATCGTGGTGGCCACATTCGTATT
CCCTGCGCCCGGCCTTCGCCCTCTTCCTTTTTCTCTATTTTACCATGCTA
AATACATAGCTCTCTCTTCCTCCGTCGCTCCCCCCTCCGAGCACTTCCCG
GCCTCTACGCCCCACTCGTCCTCCCCCCCATGGCCCTTCCATCTCCTCCG
CGGTCTCTGCTCTCCCCTACCCACACGGCACATGACCCGACGCAACACAT
CGCACGAGTAGCACTGAGGCGTCGACTAACTGCACCTCCTGCCCCGCGGG
ATACTTCTGCGACGATCCCGAGGCCGCGCCCCAGCCTTGCGAGGTCGGTT
TCTATAGCGGGGGAGGAAGTGCTGTCTGCTTGGCGTGCCAGCCGGGGTAT
CACTGTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig523:17480..18488-

>mRNA_L-elsbetiae_contig523.13339.1 ID=mRNA_L-elsbetiae_contig523.13339.1|Name=mRNA_L-elsbetiae_contig523.13339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig523:17480..18488- (Laminarionema elsbetiae ELsaHSoW15)
TGCCCCGAAGGATCCTATTCGCTAGGGCGCCAGCAAGCGTGCACGCCGTG
CCAGGCTGGCTACTATTGCACCAACCCTGCCACTGCCGAAAGCTTTCCAT
GTGCGACGGGGACGTTTTCAGTTGGCGGCAAGCATCAGTGCACCGATTGC
CCAGCCGGATACACTTGCAGTGCCCCGAAGGATCCTATTCGCTAGGGCGC
CAGCAAGCGTGCACGCCGTGCCAGGCTGGCTACTATTGCACCAACCCTGC
CACTGCCGAAAGCTTTCCATGTGCGACGGGGACGTTTTCAGTTGGCGGCA
AGCATCAGTGCACCGATTGCCCAGCCGGATACACTTGCAGTTCCAGGTCG
ACCGATCAAAGTGAGCAGTGCGGGTTGGGGTACTACAGCCTTCAGGGCGA
GCCTCTCTGCACTCCCTGCCCGGCGGGCTCCCGCTGCCCCCTCCCACAGG
ACAGCCCAATTGCCTGCGATCCCGGGTACTACAGTTCCAGGTCGACCGAT
CAAAGTGAGCAGTGCGGGTTGGGGTACTACAGCCTTCAGGGCGAGCCTCT
CTGCACTCCCTGCCCGGCGGGCTCCCGCTGCCCCCTCCCACAGGACAGCC
CAATTGCCTGCGATCCCGGGTACTACAGCACTGAGGCGTCGACTAACTGC
ACCTCCTGCCCCGCGGGATACTTCTGCGACGATCCCGAGGCCGCGCCCCA
GCCTTGCGAGGTCGGTTTCTATAGCGGGGGAGGAAGTGCTGTCTGCTTGG
CGTGCCAGCCGGGGTATCACTGTCCCCACTGAGGCGTCGACTAACTGCAC
CTCCTGCCCCGCGGGATACTTCTGCGACGATCCCGAGGCCGCGCCCCAGC
CTTGCGAGGTCGGTTTCTATAGCGGGGGAGGAAGTGCTGTCTGCTTGGCG
TGCCAGCCGGGGTATCACTGTCCC
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