mRNA_L-elsbetiae_contig5229.13335.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5229.13335.1
Unique NamemRNA_L-elsbetiae_contig5229.13335.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: D7FJN1_ECTSI (Cullin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN1_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.100e-74
Identity = 110/115 (95.65%), Postives = 112/115 (97.39%), Query Frame = 1 
Query:   10 QYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            +YLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSL EAGLKHFKTLVYD VK+TVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGM TLD
Sbjct:   26 EYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDAVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMATLD 140
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 3.250e-70
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T  QYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSL EAGLKHFKTLVYDVVK+TVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD
Sbjct:   78 TISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLKEAGLKHFKTLVYDVVKSTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 195
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 199 bits (507), Expect = 6.170e-58
Identity = 94/114 (82.46%), Postives = 103/114 (90.35%), Query Frame = 1 
Query:   13 YLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            YL+GTVV ALR +HGEFLLKELVRRWSNHKIMN WM KFF YLDRYYVKHH+LP+LSEAGLKHFKTLVYDVVK   V AMLDVIN EREG +IDRPL+G+CV+LFESMGMGTL+
Sbjct:   84 YLTGTVVPALRNKHGEFLLKELVRRWSNHKIMNDWMMKFFMYLDRYYVKHHNLPTLSEAGLKHFKTLVYDVVKGNAVRAMLDVINSEREGAVIDRPLLGACVDLFESMGMGTLE 197
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A7S2WAA5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAA5_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.780e-46
Identity = 77/118 (65.25%), Postives = 97/118 (82.20%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T   YLSGTV+ ALR++H  FLLKEL  RW NH+IMN+WMQ+FF YLDRYYVKHHSLPSL +AGL HFK L++D V+  V NAM+D+IN+ER+G +I+R L+ SCV LFE+MGMG+L+
Sbjct:   75 TIRNYLSGTVLPALRDKHDIFLLKELTARWGNHEIMNKWMQRFFMYLDRYYVKHHSLPSLMDAGLGHFKALIFDEVRRDVANAMIDLINQERDGAVIERGLVKSCVRLFEAMGMGSLE 192
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 162 bits (411), Expect = 2.260e-44
Identity = 77/118 (65.25%), Postives = 95/118 (80.51%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T   YL+ TV+ ALR QH +FLL EL +RW+NHKIMN+WM+ FF YLDRYYVKHHSLP+L  AGLKHFKTLVY+ VK  VVNAM+ +I+ ER+  +IDR L+ +CVEL E+MGMG+LD
Sbjct:   76 TICDYLTKTVLPALRHQHNDFLLTELTKRWANHKIMNKWMRLFFMYLDRYYVKHHSLPTLDVAGLKHFKTLVYNEVKKDVVNAMIGLIDAERDEKLIDRGLVKNCVELLEAMGMGSLD 193
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.970e-43
Identity = 75/118 (63.56%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T   YL+ TV+ AL+ +  E+LLKEL  RW+NHKIMN+WMQKFF YLDRYYVKHHSLP+L  AGLKHFK LVY  VK   V A+L +I+ ER+G +IDR L+ +CVEL E+MGMG+LD
Sbjct:   76 TICNYLNETVLPALKNKRSEYLLKELTERWNNHKIMNKWMQKFFMYLDRYYVKHHSLPTLDVAGLKHFKNLVYGEVKKEAVGAILTMIDTERDGAMIDRDLVKNCVELIEAMGMGSLD 193
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A7S3ZYF8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZYF8_9STRA)

HSP 1 Score: 152 bits (385), Expect = 8.160e-42
Identity = 75/118 (63.56%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T   YLS TV+ AL+++ G  LL EL  RWSNHKIMN+WM+ FF YLDRYYVKHHSLP+L  AGLKHFKTLVY+ VK  VVNAM+ +I+ ER+  +IDR L+ + VEL E+MGMG+LD
Sbjct:   76 TICDYLSKTVLPALKQKSGNALLTELTVRWSNHKIMNKWMRLFFMYLDRYYVKHHSLPTLDVAGLKHFKTLVYNEVKKDVVNAMIALIDAERDQALIDRALVKNTVELLEAMGMGSLD 193
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A7S4ILC2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILC2_9STRA)

HSP 1 Score: 154 bits (388), Expect = 3.480e-41
Identity = 77/121 (63.64%), Postives = 95/121 (78.51%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALRE---QHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T  +YL+ TV+ ALRE   Q G  LL EL  RWSNH+IMN+W++KFF YLDRYYVKHHSLP+LS+AGLKHFKT VYD +K     A+L +I++EREG IID+ L+ S +EL+ESMGMGTLD
Sbjct:   79 TIERYLTSTVLPALREKTGQGGTILLTELQHRWSNHQIMNKWLKKFFTYLDRYYVKHHSLPTLSQAGLKHFKTHVYDEMKRDTTAAILTLIDEEREGEIIDKTLVKSIIELYESMGMGTLD 199
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A7S2JV95_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JV95_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.580e-41
Identity = 71/118 (60.17%), Postives = 95/118 (80.51%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T   YL+ TV+ ALR+++G  LLK+L  RW NH IMN W++KFF YLDRYYVKHHSLP+LSEAGL+HFK  VYDV+K+   +A+LD++N+ REG++ID+ L+ + VELFE+MGMG L+
Sbjct:   78 TIQNYLTRTVLPALRQENGIQLLKQLRVRWKNHVIMNNWLKKFFTYLDRYYVKHHSLPTLSEAGLRHFKIQVYDVIKSDACSAILDMVNQHREGSVIDKDLVKNIVELFEAMGMGNLE 195
[Close]
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Match: A0A7R9ZBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBG0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 7.250e-41
Identity = 77/121 (63.64%), Postives = 95/121 (78.51%), Query Frame = 1 
Query:    1 TTLQYLSGTVVNALRE---QHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRYYVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRPLIGSCVELFESMGMGTLD 354
            T  +YL+ TV+ ALRE   Q G  LL EL  RWSNH+IMN+W++KFF YLDRYYVKHHSLP+LS+AGL+HFKT VYD +K     A+L +I++EREG IID+ L+ S VEL+ESMGMGTLD
Sbjct:  113 TIERYLTITVLPALREKTGQGGTILLTELQHRWSNHQIMNKWLKKFFTYLDRYYVKHHSLPTLSQAGLRHFKTHVYDEMKRDTTAAILTLIDEEREGEIIDKTLVKSIVELYESMGMGTLD 233
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5229.13335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJN1_ECTSI1.100e-7495.65Cullin domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KYW9_9PHAE3.250e-7096.61CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YLK2_9STRA6.170e-5882.46Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2WAA5_9STRA1.780e-4665.25Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0XVV7_AURAN2.260e-4465.25CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S3JSF7_9STRA5.970e-4363.56Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3ZYF8_9STRA8.160e-4263.56Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4ILC2_9STRA3.480e-4163.64Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2JV95_9STRA6.580e-4160.17Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7R9ZBG0_9STRA7.250e-4163.64Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5229contigL-elsbetiae_contig5229:401..2756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue5.4e-59
Seed eggNOG ortholog2880.D7FY17
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Ec32 ortholog descriptionCullin repeat-like-containing domain
Ec32 orthologEc-09_000430.1
Exons4
Model size354
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5229.13335.1prot_L-elsbetiae_contig5229.13335.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5229 401..2756 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816537.2108953-CDS-L-elsbetiae_contig5229:400..4461622816537.2108953-CDS-L-elsbetiae_contig5229:400..446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 401..446 -
1691683631.1752489-CDS-L-elsbetiae_contig5229:400..4461691683631.1752489-CDS-L-elsbetiae_contig5229:400..446Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 401..446 -
1622816537.2245586-CDS-L-elsbetiae_contig5229:787..8611622816537.2245586-CDS-L-elsbetiae_contig5229:787..861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 788..861 -
1691683631.1872268-CDS-L-elsbetiae_contig5229:787..8611691683631.1872268-CDS-L-elsbetiae_contig5229:787..861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 788..861 -
1622816537.2412226-CDS-L-elsbetiae_contig5229:1653..17411622816537.2412226-CDS-L-elsbetiae_contig5229:1653..1741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 1654..1741 -
1691683631.1963754-CDS-L-elsbetiae_contig5229:1653..17411691683631.1963754-CDS-L-elsbetiae_contig5229:1653..1741Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 1654..1741 -
1622816537.2531989-CDS-L-elsbetiae_contig5229:2610..27561622816537.2531989-CDS-L-elsbetiae_contig5229:2610..2756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 2611..2756 -
1691683631.206528-CDS-L-elsbetiae_contig5229:2610..27561691683631.206528-CDS-L-elsbetiae_contig5229:2610..2756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5229 2611..2756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5229.13335.1

>prot_L-elsbetiae_contig5229.13335.1 ID=prot_L-elsbetiae_contig5229.13335.1|Name=mRNA_L-elsbetiae_contig5229.13335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
TTLQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDRY
YVKHHSLPSLSEAGLKHFKTLVYDVVKTTVVNAMLDVINKEREGTIIDRP
LIGSCVELFESMGMGTLD
back to top

mRNA from alignment at L-elsbetiae_contig5229:401..2756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5229.13335.1 ID=mRNA_L-elsbetiae_contig5229.13335.1|Name=mRNA_L-elsbetiae_contig5229.13335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2356bp|location=Sequence derived from alignment at L-elsbetiae_contig5229:401..2756- (Laminarionema elsbetiae ELsaHSoW15)
ACAACACTACAGTACCTCTCCGGGACCGTGGTGAACGCCCTCAGGGAGCA
GCACGGGGAGTTCTTGCTTAAGGAGCTGGTACGGAGGTGGTCGAACCACA
AGATCATGAACCAGTGGATGCAGAAGTTCTTCCAGTACCTCGACAGGTGC
GCGCGCGCGTGTATATGTGTGTGTGCCTGTGTGCCTGTGTGTGCCTGTGT
GTGCCTGTGTGTGCCTGTGTGTGCCTGTGTGAGTATGTGCGTGTGCGTGT
GTTTCGTAGTCTGTCAGCAAGATGCATGCGGTCTCCCTGGTTGTTTTTGC
TGGGAGTGTTGAGAAGGGCGCGGTGAAGAGTTCCAGCCGGCCTCGAAAAA
CATCACCCACCACCCCACCCCCGAAGACCGTACGTACCCTCGTGTAGTTC
ATGCGAGAGGCGAACCCCCCCCCGAGCACTGCACCACACCCCGTACTGTG
TATGCTCTCCGCCGACCGACCTTTTCCCACCCGGTGTGCAACGCACGCGA
AAGCAGCTTCATGCGCCCCCTTTCGTCTGCTCACCACCGCGCTACGTAGT
TCAGACCGCGCTGACCACTGCCGTCCATCCGAGACGGGCTCACCGTTGCT
TTTCGCCACCCGGATGCGGGGGTAGTAAGCCTTCGCAAGATTTACTGCTG
TAAGAAACCATACGGGATGAAAATATGGGAACGGCGAATGGGGGGTCGGT
TTGGGGTTACATAGGGTTAGGGTTAGGGTCACGGAACCCCTGTCTATTAT
TTACTATATATATAAATAGACAGGAGTTCTTCGCGAAGGCGGCCCTGCGC
GGGGGGGGGGGGGGGGGGGGGGGAGGCAGCTGGTCCCAAATTCCAAGTCC
AGGGTGGAACCACCGGCGAATTCGCGGGGACGCACGCACGAAACCTCCGG
GGGATCCGGCCTGCTGTGTGTAATGTGCACCCCCTCTTGGCGCCTCCAGC
GGAACCTGAATCCCGGCGAATTCGATCCCCACCCCGAACGTCCGAAACGA
AACCTCGACCCGCAGGTACTACGTGAAGCACCACTCGTTGCCGTCACTGA
GCGAGGCCGGGCTCAAGCACTTCAAGACCCTCGTCTACGACGTCGTCAAG
ACGGTGAGCCCCCATCTTGTTTTTGTTTTGTTTTTTCGTTTTGTGCAACC
CCTCACGTGCACGGCTACATCTGTGTGGCTGTTTGATGCGTACTGCTGTA
TTTGGGGTTGTTAGCCCATTGTGCGTGACGTATTTGTCCCATGCTTGTTC
GGTCTGCCGTTGGCCGGCGTTGTCTGCTTGATTTTATGTATGGCCTGATT
TATTTCCCTAGTGCTGTCGTGCGGGTCAGATATGTCTCCGAAAACGGGGA
TACATAAACATGCAGCCGCGTCACGCGCGTAGGGAGAGCGTGAAACACGT
CTGTCGCGATTTTTTCACCTCTGACTTTCATTTCCACACGCGACAACTCG
CCCACGTAACAACTCGCGCACGCGAACCCGTGTCTGGATCGGTGGTATAC
CGGGTTGTGGTGGTATCGTACTGCGTCTCCTAGTAATCGCATGCGACGAC
GATGGGTAGACACAAGGCAGCGGGATTGAGAAGGAAGCGAAGTGAAAAGC
GAGAATTTCGGAGGAATTTTTCGCCCCCAACATCCAAAGCAACCGGTCTG
CCCCCCCCCCCCCCCTCCCTCGCATGTGGTGCTGCCGCCCCTTGGCTCTC
CTCCTTTTGGTGCAATATGTATACGTGTTTTGTTTTGGTTGTCATGTGCC
TCGCGCGTAAATACACACTCGGTTCTTCCTTGCGGTGTCGGCGGCACAAT
CTTATCGCGATCGTGATGGTACATATACAACGCGAAATACGCCGCGTGGC
TTGTGTGCGTGATGGTGATGGTGTCGGTGTGCGTTGGTGCGTCAGACGGT
GGTGAACGCGATGCTGGACGTGATCAACAAGGAGCGGGAGGGGACCATCA
TCGACCGACCGCTCATCGGGTGAGAGATGCACGCCCCCCCCCCTGAGAGA
GAGACAGACAGAGAGAGAGAGAGGAGGGAAGAGAGAGAGGGTATGGTTGG
GTTTGGTTTGGTTTCTTTGCGTCAAAGCACGCCTTTTTCCTTGCCAGAAA
TACATACCATACTACATATGTATGTATATTTACTGTTTTTTATCCGTTTT
TTTTTGTCTCTTTTCGTTTGTAACCGTCGCCTGGCGCGTTTCTCTCCCCT
CCCCCGCCGCGGGCGCGCATCCTGTACTCCCCGATGTACCGCTATGTTTC
GGGGATCACTCCGATTTCGACTGGATTGTAAACTGATCCTCATTATTGCG
TCCGATCCAGGTCGTGCGTGGAGCTGTTCGAGTCGATGGGGATGGGGACG
CTGGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5229:401..2756-

>mRNA_L-elsbetiae_contig5229.13335.1 ID=mRNA_L-elsbetiae_contig5229.13335.1|Name=mRNA_L-elsbetiae_contig5229.13335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig5229:401..2756- (Laminarionema elsbetiae ELsaHSoW15)
ACAACACTACAGTACCTCTCCGGGACCGTGGTGAACGCCCTCAGGGAGCA
GCACGGGGAGTTCTTGCTTAAGGAGCTGGTACGGAGGTGGTCGAACCACA
AGATCATGAACCAGTGGATGCAGAAGTTCTTCCAGTACCTCGACAGACAA
CACTACAGTACCTCTCCGGGACCGTGGTGAACGCCCTCAGGGAGCAGCAC
GGGGAGTTCTTGCTTAAGGAGCTGGTACGGAGGTGGTCGAACCACAAGAT
CATGAACCAGTGGATGCAGAAGTTCTTCCAGTACCTCGACAGGTACTACG
TGAAGCACCACTCGTTGCCGTCACTGAGCGAGGCCGGGCTCAAGCACTTC
AAGACCCTCGTCTACGACGTCGTCAAGACGGTACTACGTGAAGCACCACT
CGTTGCCGTCACTGAGCGAGGCCGGGCTCAAGCACTTCAAGACCCTCGTC
TACGACGTCGTCAAGACGACGGTGGTGAACGCGATGCTGGACGTGATCAA
CAAGGAGCGGGAGGGGACCATCATCGACCGACCGCTCATCGGACGGTGGT
GAACGCGATGCTGGACGTGATCAACAAGGAGCGGGAGGGGACCATCATCG
ACCGACCGCTCATCGGGTCGTGCGTGGAGCTGTTCGAGTCGATGGGGATG
GGGACGCTGGACGTCGTGCGTGGAGCTGTTCGAGTCGATGGGGATGGGGA
CGCTGGAC
back to top