mRNA_L-elsbetiae_contig5221.13327.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5221.13327.1
Unique NamemRNA_L-elsbetiae_contig5221.13327.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5221.13327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5221contigL-elsbetiae_contig5221:3352..4576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816536.6165302-CDS-L-elsbetiae_contig5221:3353..35101622816536.6165302-CDS-L-elsbetiae_contig5221:3353..3510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5221 3354..3510 -
1691683630.763659-CDS-L-elsbetiae_contig5221:3353..35101691683630.763659-CDS-L-elsbetiae_contig5221:3353..3510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5221 3354..3510 -
1622816536.6306274-CDS-L-elsbetiae_contig5221:4280..45761622816536.6306274-CDS-L-elsbetiae_contig5221:4280..4576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5221 4281..4576 -
1691683630.772821-CDS-L-elsbetiae_contig5221:4280..45761691683630.772821-CDS-L-elsbetiae_contig5221:4280..4576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5221 4281..4576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5221.13327.1prot_L-elsbetiae_contig5221.13327.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5221 3354..4576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5221.13327.1

>prot_L-elsbetiae_contig5221.13327.1 ID=prot_L-elsbetiae_contig5221.13327.1|Name=mRNA_L-elsbetiae_contig5221.13327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
IPAGDESAADCGLHLTPLCCHQKLPLVNSGRIAAAGGAKVSASSGGADGD
GDDGVVFAAAAQAPVRAVSTRQEARIGWEAADASSPGDACSGRKERTARS
LPPREESEVAFIAACVAPVQPPAWGRPNARASPRTATLATTSEKKNFRTE
K
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mRNA from alignment at L-elsbetiae_contig5221:3352..4576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5221.13327.1 ID=mRNA_L-elsbetiae_contig5221.13327.1|Name=mRNA_L-elsbetiae_contig5221.13327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1225bp|location=Sequence derived from alignment at L-elsbetiae_contig5221:3352..4576- (Laminarionema elsbetiae ELsaHSoW15)
ATTCCGGCTGGAGACGAATCAGCAGCAGATTGCGGTCTGCACCTGACGCC
GCTCTGCTGCCACCAGAAGCTACCGCTGGTAAACTCCGGCCGCATTGCGG
CGGCAGGCGGCGCCAAGGTGAGCGCGAGCAGCGGCGGGGCCGACGGCGAT
GGAGACGACGGTGTGGTCTTCGCAGCGGCAGCTCAGGCGCCAGTACGAGC
AGTCTCGACGAGGCAAGAGGCCCGGATTGGCTGGGAGGCTGCCGACGCTT
CTTCTCCCGGGGACGCGTGTTCGGGAAGGAAGGAGCGAACGGCAAGGTAA
GCCGGGGATGCCACCGTTGGTAGGCTGGCCTCGCTGTTGTTGATTCTCGC
GTTGTAGGTCGGCTTTTAGTACCCGCCTGTAAAAATAAACTTGGGGACTG
ACACTTAAGGGTGGACGTACTCATGACTACTGGCCTACGTGCGCTGCGCT
CCCCAAGCATGCTGGTCTCTTCGAGGCCCGGTGTAAGTGGTCGGCGACTA
TTCGGAAATTCCCGGCGATATGTATGTAGGTACGGGCGATCCGTCGTTGC
GGTAAGAGGAATGACGAGGGCATCTCCCTCCCTTCCTCCTCTCCCCAACG
ATTCCGTCGCGAATCTTCTGAGCACTGGTGCAAACATAGTCTTTGTACCT
AGGTTATGGGGGGCACCCGCAAGAAAAAAAAAGAATAAATAAAATAGGGT
CCCGCGTCGCCCACGCCTTCGTCACCTCAACGCTTCTCCGCCGTGAGGGC
ATTAGACGACATTAGACGAGCTGTCTTATTTTTCACCACTTAATAGACTA
TGATTTGGCGCTACAGCCGAACTCGGCCTACTATACATCACCAGTAGTGG
CGGCTCAGCCGACCCTGCCATAAATAATGATTTACTCTGAGACTAAGTTT
TAGTTAAACAACGGGTTCGTGCACGTAGGTACATAGGAGCATAGGTAGAG
AAAAGGTAGAAACATTCAGATATTGCGGTCAGTTTGGTTGCTGAACCCCC
CCGTTGTCTTTGTCGCCCACACCACATACGCGCGCGCCCTCGCCAAACCG
AAAAAAAAAAAACAAGGTCGCTGCCACCCCGAGAAGAAAGCGAGGTTGCT
TTCATCGCAGCCTGTGTTGCTCCCGTCCAACCGCCAGCGTGGGGTCGGCC
TAACGCACGCGCCAGCCCTCGGACGGCCACGCTCGCCACGACGAGTGAGA
AAAAAAACTTTCGTACCGAGAAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5221:3352..4576-

>mRNA_L-elsbetiae_contig5221.13327.1 ID=mRNA_L-elsbetiae_contig5221.13327.1|Name=mRNA_L-elsbetiae_contig5221.13327.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig5221:3352..4576- (Laminarionema elsbetiae ELsaHSoW15)
ATTCCGGCTGGAGACGAATCAGCAGCAGATTGCGGTCTGCACCTGACGCC
GCTCTGCTGCCACCAGAAGCTACCGCTGGTAAACTCCGGCCGCATTGCGG
CGGCAGGCGGCGCCAAGGTGAGCGCGAGCAGCGGCGGGGCCGACGGCGAT
GGAGACGACGGTGTGGTCTTCGCAGCGGCAGCTCAGGCGCCAGTACGAGC
AGTCTCGACGAGGCAAGAGGCCCGGATTGGCTGGGAGGCTGCCGACGCTT
CTTCTCCCGGGGACGCGTGTTCGGGAAGGAAGGAGCGAACGGCAAGATTC
CGGCTGGAGACGAATCAGCAGCAGATTGCGGTCTGCACCTGACGCCGCTC
TGCTGCCACCAGAAGCTACCGCTGGTAAACTCCGGCCGCATTGCGGCGGC
AGGCGGCGCCAAGGTGAGCGCGAGCAGCGGCGGGGCCGACGGCGATGGAG
ACGACGGTGTGGTCTTCGCAGCGGCAGCTCAGGCGCCAGTACGAGCAGTC
TCGACGAGGCAAGAGGCCCGGATTGGCTGGGAGGCTGCCGACGCTTCTTC
TCCCGGGGACGCGTGTTCGGGAAGGAAGGAGCGAACGGCAAGGTCGCTGC
CACCCCGAGAAGAAAGCGAGGTTGCTTTCATCGCAGCCTGTGTTGCTCCC
GTCCAACCGCCAGCGTGGGGTCGGCCTAACGCACGCGCCAGCCCTCGGAC
GGCCACGCTCGCCACGACGAGTGAGAAAAAAAACTTTCGTACCGAGAAGG
TCGCTGCCACCCCGAGAAGAAAGCGAGGTTGCTTTCATCGCAGCCTGTGT
TGCTCCCGTCCAACCGCCAGCGTGGGGTCGGCCTAACGCACGCGCCAGCC
CTCGGACGGCCACGCTCGCCACGACGAGTGAGAAAAAAAACTTTCGTACC
GAGAAG
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