mRNA_L-elsbetiae_contig5208.13304.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5208.13304.1
Unique NamemRNA_L-elsbetiae_contig5208.13304.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A6H5LCY9_9PHAE (Pept_C1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LCY9_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.210e-54
Identity = 84/97 (86.60%), Postives = 95/97 (97.94%), Query Frame = 1
Query:    1 VEDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 291
            +E+IQRDMMK+GSVTAAFSV+SDFLTYSGGVY+++SG +MGGHAVK+IGWGTD+ SGEDYWL+ANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV
Sbjct:  466 IENIQRDMMKYGSVTAAFSVFSDFLTYSGGVYTHESGSFMGGHAVKMIGWGTDEVSGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 562          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A7S1AUC0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AUC0_NOCSC)

HSP 1 Score: 141 bits (356), Expect = 1.430e-41
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    1 VEDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 291
            V+ IQ+DMM++GSVT AF+VY DF TY+ GVY + SG  +GGHA+K+ GWGT+D   EDYWLVANSWN  WG+ G F+I RGVNECGIEGQ+ AG V
Sbjct:   25 VQGIQQDMMQYGSVTGAFTVYEDFPTYTSGVYHHVSGSQLGGHAIKIFGWGTEDS--EDYWLVANSWNDQWGDHGTFKIRRGVNECGIEGQVSAGTV 119          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A835ZA77_9STRA (Cathepsin B-like proteinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA77_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.910e-41
Identity = 70/97 (72.16%), Postives = 78/97 (80.41%), Query Frame = 1
Query:    1 VEDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQ-YMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 288
            V +IQ+DMM+ G VTAAFSVYSDFLTY GGVY    G  +MGGHAVK+IGWGTD ++G DYW V NSWN SWGE G FRILRG N CGIEG+IVAGE
Sbjct:  432 VANIQKDMMEHGPVTAAFSVYSDFLTYQGGVYQRTKGSSFMGGHAVKIIGWGTDKETGVDYWTVLNSWNESWGEQGTFRILRGSNHCGIEGEIVAGE 528          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A210PQX0_MIZYE (Cathepsin B n=4 Tax=Pectinidae TaxID=6566 RepID=A0A210PQX0_MIZYE)

HSP 1 Score: 140 bits (353), Expect = 1.220e-38
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    1 VEDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 288
            VE IQ D+M  G V AAF+VYSDFLTY  GVY + +GQ +GGHA+K++GWG +D  G DYWLVANSWNP WG+ G F+ILRG +ECGIE Q+VAGE
Sbjct:  242 VEKIQTDIMTNGPVEAAFTVYSDFLTYKSGVYKHTTGQALGGHAIKLLGWGNED--GSDYWLVANSWNPDWGDNGFFKILRGRDECGIESQVVAGE 335          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: Q6SSE0_UROMR (Cathepsin B n=1 Tax=Uronema marinum TaxID=35107 RepID=Q6SSE0_UROMR)

HSP 1 Score: 135 bits (341), Expect = 9.520e-37
Identity = 61/96 (63.54%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    4 EDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 291
            E I+ ++ ++GS TA+F+VYSDFLTYS GVY N SG YMGGHA+K++GWG ++  G  YWL ANSWN SWGE G F+ILRG NECGIE  +VAG V
Sbjct:  253 EQIKAEIYQYGSTTASFNVYSDFLTYSSGVYQNTSGSYMGGHAIKMLGWGVEN--GTPYWLCANSWNSSWGENGFFKILRGSNECGIESGMVAGFV 346          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A5A8C1L9_CAFRO (Pept_C1 domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8C1L9_CAFRO)

HSP 1 Score: 135 bits (339), Expect = 1.480e-36
Identity = 59/97 (60.82%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 VEDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 291
            V DIQ+D+ ++G+VTAAFSVY DFL+Y  GVY + +G  +GGHA+ +IGWGT+  SG DYWLV NSWN  WG  G F+I RGV+ECGIE ++VAG+V
Sbjct:  244 VADIQQDIYQYGAVTAAFSVYEDFLSYKSGVYKHVTGSMLGGHAISIIGWGTE--SGTDYWLVRNSWNTDWGANGYFKIARGVDECGIEDEVVAGDV 338          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: H8ZQD7_REICL (Cathepsin B (Fragment) n=1 Tax=Reishia clavigera TaxID=272940 RepID=H8ZQD7_REICL)

HSP 1 Score: 130 bits (327), Expect = 4.200e-36
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 VEDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 288
            V DI  +++  G V AAF+VYSDFL Y  GVY + +G  +GGHAVK++G+G ++  G+ YWLVANSWNP WG+ G F+ILRGV+ECGIEGQIVAGE
Sbjct:  113 VNDIMEELVTRGPVEAAFTVYSDFLQYHSGVYRHTTGSALGGHAVKILGYGVEN--GDKYWLVANSWNPDWGDQGFFKILRGVDECGIEGQIVAGE 206          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A7S1TV86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV86_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.960e-36
Identity = 57/93 (61.29%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    4 EDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVA 282
            E IQR +M+ G V  AF+VY DF  Y+GGVY + +G   GGHAVK +GWG D  +G  YW VANSWNP WGE G FRILRGVNECGIE ++ A
Sbjct:   14 EQIQRFIMESGPVETAFTVYDDFEDYAGGVYQHLTGNNAGGHAVKFVGWGVDQATGTKYWKVANSWNPYWGEDGYFRILRGVNECGIENEVTA 106          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A0V0Q9L5_PSEPJ (Pept_C1 domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0Q9L5_PSEPJ)

HSP 1 Score: 134 bits (336), Expect = 5.240e-36
Identity = 60/96 (62.50%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    4 EDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 291
            E I  ++ +FGS TA+F+VYSDFLTY  G+Y + SG YMGGHA+K+IGWG ++  G  YW+ ANSWN SWGE G FRILRG NECGIE  +VAG V
Sbjct:  252 EQIMAEIYQFGSTTASFNVYSDFLTYESGIYQHTSGSYMGGHAIKMIGWGVEN--GTPYWICANSWNSSWGENGFFRILRGSNECGIESGMVAGLV 345          
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Match: A0A2H2JA59_CAEJA (Pept_C1 domain-containing protein n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2JA59_CAEJA)

HSP 1 Score: 127 bits (319), Expect = 1.080e-35
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    1 VEDIQRDMMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSGEDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 288
            V  IQ ++ + G V AAFSVY DF  Y+ GVY + +G+Y+GGHA+K+IGWGT+  SG  YWLVANSW   WGE G F+ILRGV+ECGIE  +VAG+
Sbjct:   48 VASIQTEIHENGPVEAAFSVYEDFYKYTSGVYKHTAGKYLGGHAIKIIGWGTE--SGSPYWLVANSWGTDWGESGFFKILRGVDECGIESAVVAGK 141          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5208.13304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCY9_9PHAE1.210e-5486.60Pept_C1 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S1AUC0_NOCSC1.430e-4164.95Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A835ZA77_9STRA4.910e-4172.16Cathepsin B-like proteinase n=1 Tax=Tribonema minu... [more]
A0A210PQX0_MIZYE1.220e-3865.63Cathepsin B n=4 Tax=Pectinidae TaxID=6566 RepID=A0... [more]
Q6SSE0_UROMR9.520e-3763.54Cathepsin B n=1 Tax=Uronema marinum TaxID=35107 Re... [more]
A0A5A8C1L9_CAFRO1.480e-3660.82Pept_C1 domain-containing protein n=3 Tax=Sar TaxI... [more]
H8ZQD7_REICL4.200e-3661.46Cathepsin B (Fragment) n=1 Tax=Reishia clavigera T... [more]
A0A7S1TV86_9STRA4.960e-3661.29Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0V0Q9L5_PSEPJ5.240e-3662.50Pept_C1 domain-containing protein n=1 Tax=Pseudoco... [more]
A0A2H2JA59_CAEJA1.080e-3559.38Pept_C1 domain-containing protein n=1 Tax=Caenorha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5208contigL-elsbetiae_contig5208:6603..7093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5.1e-41
Seed eggNOG ortholog2880.D8LG82
KEGG koko:K01363
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG4870@1,KOG1543@2759
EC3.4.22.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
Exons2
Model size294
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5208.13304.1prot_L-elsbetiae_contig5208.13304.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5208 6624..7093 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816534.4494824-UTR-L-elsbetiae_contig5208:6602..66231622816534.4494824-UTR-L-elsbetiae_contig5208:6602..6623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5208 6603..6623 +
1691683629.3281054-UTR-L-elsbetiae_contig5208:6602..66231691683629.3281054-UTR-L-elsbetiae_contig5208:6602..6623Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5208 6603..6623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816534.465583-CDS-L-elsbetiae_contig5208:6623..67111622816534.465583-CDS-L-elsbetiae_contig5208:6623..6711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 6624..6711 +
1691683629.3463771-CDS-L-elsbetiae_contig5208:6623..67111691683629.3463771-CDS-L-elsbetiae_contig5208:6623..6711Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 6624..6711 +
1622816534.4794035-CDS-L-elsbetiae_contig5208:6908..70931622816534.4794035-CDS-L-elsbetiae_contig5208:6908..7093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 6909..7093 +
1691683629.3564286-CDS-L-elsbetiae_contig5208:6908..70931691683629.3564286-CDS-L-elsbetiae_contig5208:6908..7093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5208 6909..7093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5208.13304.1

>prot_L-elsbetiae_contig5208.13304.1 ID=prot_L-elsbetiae_contig5208.13304.1|Name=mRNA_L-elsbetiae_contig5208.13304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MMKFGSVTAAFSVYSDFLTYSGGVYSNKSGQYMGGHAVKVIGWGTDDDSG
EDYWLVANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV*
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mRNA from alignment at L-elsbetiae_contig5208:6603..7093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5208.13304.1 ID=mRNA_L-elsbetiae_contig5208.13304.1|Name=mRNA_L-elsbetiae_contig5208.13304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=491bp|location=Sequence derived from alignment at L-elsbetiae_contig5208:6603..7093+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGGATATCCAGCGAGACATGATGAAGTTCGGCTCAGTGACGGCGGC GTTCTCTGTGTACTCGGACTTCCTCACCTACTCCGGCGGAGTCTACAGCA ATAAATCAGGTACGGGGACGCCCTCGTCCAAGATTCTGGCGTTCTCCTTT CTCCTTTCTCAACATGCAATTTCAGGAGGACTGTCTGAGCTGTTTTTTTT GCGTCGCCTTATAACAACACACCACCCGAACATAGGTAGCTGCAAGGCTC ACATCTACGCGCGTGTTTGGAATGCTGTGCATGCCGTATCCTCGAAAATG ACGCAGGTCAATACATGGGGGGGCACGCGGTCAAGGTCATCGGGTGGGGA ACGGACGACGACAGCGGCGAGGACTACTGGCTCGTGGCCAACAGCTGGAA CCCGTCGTGGGGCGAGGGCGGCCTCTTCCGAATCCTTCGCGGCGTCAACG AGTGCGGCATCGAAGGCCAGATCGTCGCCGGCGAAGTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5208:6603..7093+

>mRNA_L-elsbetiae_contig5208.13304.1 ID=mRNA_L-elsbetiae_contig5208.13304.1|Name=mRNA_L-elsbetiae_contig5208.13304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig5208:6603..7093+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAAGTTCGGCTCAGTGACGGCGGCGTTCTCTGTGTACTCGGACTT
CCTCACCTACTCCGGCGGAGTCTACAGCAATAAATCAGATGATGAAGTTC
GGCTCAGTGACGGCGGCGTTCTCTGTGTACTCGGACTTCCTCACCTACTC
CGGCGGAGTCTACAGCAATAAATCAGGTCAATACATGGGGGGGCACGCGG
TCAAGGTCATCGGGTGGGGAACGGACGACGACAGCGGCGAGGACTACTGG
CTCGTGGCCAACAGCTGGAACCCGTCGTGGGGCGAGGGCGGCCTCTTCCG
AATCCTTCGCGGCGTCAACGAGTGCGGCATCGAAGGCCAGATCGTCGCCG
GCGAAGTGTAAGTCAATACATGGGGGGGCACGCGGTCAAGGTCATCGGGT
GGGGAACGGACGACGACAGCGGCGAGGACTACTGGCTCGTGGCCAACAGC
TGGAACCCGTCGTGGGGCGAGGGCGGCCTCTTCCGAATCCTTCGCGGCGT
CAACGAGTGCGGCATCGAAGGCCAGATCGTCGCCGGCGAAGTGTAA
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