mRNA_L-elsbetiae_contig5207.13303.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5207.13303.1
Unique NamemRNA_L-elsbetiae_contig5207.13303.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 1.570e-112
Identity = 175/219 (79.91%), Postives = 182/219 (83.11%), Query Frame = 3
Query:   51 STQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            +TQLF                 M VRS AP+SS   LKM SAGS YV TLPGAPF DGKIFDPL LS+GA P DIKKWREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLK+ Y PGDLGFDPL LKP+ EA L  M+TKELNNGRLAMIGIAGMLVQELINPADILG
Sbjct:    3 ATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKM-SAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 7.570e-106
Identity = 167/227 (73.57%), Postives = 180/227 (79.30%), Query Frame = 3
Query:   27 SSKMTLGTSTQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            SS M LGT+  L                  M VRS AP+SS   LKM SAGS YV TLPGAPF DGKIFDPL LS+GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL LKPK +A L  MQTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    4 SSNMFLGTAATLIASSTAFVAP--------MAVRSAAPASSASALKM-SAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 2.750e-104
Identity = 160/196 (81.63%), Postives = 172/196 (87.76%), Query Frame = 3
Query:  117 MTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 695
            + VRS AP+S+   LKM SAGS YV TLPGAPFSDGKIFDPL LS+GAAPGDIKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+N  DIL
Sbjct:   25 VAVRSAAPASAASALKM-SAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 5.480e-97
Identity = 141/161 (87.58%), Postives = 151/161 (93.79%), Query Frame = 3
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            +IFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 1.770e-94
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 3
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            +IFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 4.010e-92
Identity = 151/227 (66.52%), Postives = 173/227 (76.21%), Query Frame = 3
Query:   27 SSKMTLGTSTQLFXXXXXXXXXXXXXXXXXMTVRSVAPSSS---LKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            SS M LGT+  L                  M VRS AP+SS   LKM SAG+ Y+ TLPGA   +GKIFD L L++GA PG+IK WREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI  A+  PS VTGEGGL+D YSPGDLGFDP  +KPK +A L  MQ KELNNGRLAMIGI GMLVQEL+N  DILG
Sbjct:    4 SSNMFLGTAATLIASSAAFVTP--------MAVRSAAPASSASALKM-SAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 270 bits (689), Expect = 1.140e-86
Identity = 130/160 (81.25%), Postives = 140/160 (87.50%), Query Frame = 3
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 695
            KIFDPLGL++GA  GDIK WREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTI  A+  PS VTGEGGL+D YSPGDLGFDPL LKP  +  L TMQTKELNNGRLAMIGIAG LVQEL+NP +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 1.910e-83
Identity = 141/196 (71.94%), Postives = 147/196 (75.00%), Query Frame = 3
Query:  117 MTVRSVA--PSSSLKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            M VRSV   PSS     SAGS YV TLPGAPFSDGKIFDPLGLS+GAAPGDIKKWREAEIKHGRVAMLASLGV+VAE                            FW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLK+ Y PGDLGFDPL LKP  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   25 MAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 4.260e-81
Identity = 123/193 (63.73%), Postives = 150/193 (77.72%), Query Frame = 3
Query:  120 TVRSVAPSSSLKMQSAGSAYVETLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            T  S  P+S+    SAGS YV TLPGAPF+DGK++DP+GLS  A P DIKKWREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+A++P+FW  +LL +A++EY  I   F     VTGEGG++  Y PGDLGFDPLGL P+ E +L  M+TKELN+GRLAMIGI GM+VQEL+ P  I G
Sbjct:   79 TTLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271          
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Match: A0A6H5JAU1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU1_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 1.650e-66
Identity = 112/161 (69.57%), Postives = 121/161 (75.16%), Query Frame = 3
Query:  216 KIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 698
            KI DPLGLS+GAAPGDIKKWRE EIKHGRVAMLASLGV+VAE                            FWVFSLLGMAFIEYNTI+TAF+TPSA+TGEGGLK+ Y PGDLGFDPL LKP   A L  M+TKELNNGRLAMIGIAGM+ QEL+NPADILG
Sbjct:   23 KILDPLGLSDGAAPGDIKKWRETEIKHGRVAMLASLGVIVAE----------------------------FWVFSLLGMAFIEYNTIITAFDTPSALTGEGGLKEDYMPGDLGFDPLNLKPDDVAALDVMKTKELNNGRLAMIGIAGMMAQELVNPADILG 155          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5207.13303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI1.570e-11279.91Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI7.570e-10673.57Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI2.750e-10481.63Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S5_ECTSI5.480e-9787.58Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE1.770e-9488.20LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7S0_ECTSI4.010e-9266.52Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q7_ECTSI1.140e-8681.25Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.910e-8371.94LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G5B4_ECTSI4.260e-8163.73Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JAU1_9PHAE1.650e-6669.57LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5207contigL-elsbetiae_contig5207:8028..10545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.5
Seed ortholog evalue5.3e-100
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons4
Model size1206
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5207.13303.1prot_L-elsbetiae_contig5207.13303.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5207 8533..10510 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816534.355911-UTR-L-elsbetiae_contig5207:8027..85321622816534.355911-UTR-L-elsbetiae_contig5207:8027..8532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5207 8028..8532 -
1691683629.268957-UTR-L-elsbetiae_contig5207:8027..85321691683629.268957-UTR-L-elsbetiae_contig5207:8027..8532Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5207 8028..8532 -
1622816534.4172099-UTR-L-elsbetiae_contig5207:10510..105451622816534.4172099-UTR-L-elsbetiae_contig5207:10510..10545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5207 10511..10545 -
1691683629.3164268-UTR-L-elsbetiae_contig5207:10510..105451691683629.3164268-UTR-L-elsbetiae_contig5207:10510..10545Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5207 10511..10545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816534.367862-CDS-L-elsbetiae_contig5207:8532..88081622816534.367862-CDS-L-elsbetiae_contig5207:8532..8808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 8533..8808 -
1691683629.2806647-CDS-L-elsbetiae_contig5207:8532..88081691683629.2806647-CDS-L-elsbetiae_contig5207:8532..8808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 8533..8808 -
1622816534.3790355-CDS-L-elsbetiae_contig5207:9475..95591622816534.3790355-CDS-L-elsbetiae_contig5207:9475..9559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 9476..9559 -
1691683629.2889583-CDS-L-elsbetiae_contig5207:9475..95591691683629.2889583-CDS-L-elsbetiae_contig5207:9475..9559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 9476..9559 -
1622816534.389622-CDS-L-elsbetiae_contig5207:9873..99961622816534.389622-CDS-L-elsbetiae_contig5207:9873..9996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 9874..9996 -
1691683629.2976034-CDS-L-elsbetiae_contig5207:9873..99961691683629.2976034-CDS-L-elsbetiae_contig5207:9873..9996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 9874..9996 -
1622816534.4011073-CDS-L-elsbetiae_contig5207:10327..105101622816534.4011073-CDS-L-elsbetiae_contig5207:10327..10510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 10328..10510 -
1691683629.306559-CDS-L-elsbetiae_contig5207:10327..105101691683629.306559-CDS-L-elsbetiae_contig5207:10327..10510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5207 10328..10510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5207.13303.1

>prot_L-elsbetiae_contig5207.13303.1 ID=prot_L-elsbetiae_contig5207.13303.1|Name=mRNA_L-elsbetiae_contig5207.13303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MTLGTSTQLFLGTAATLIASSTAFVAPMTVRSVAPSSSLKMQSAGSAYVE
TLPGAPFSDGKIFDPLGLSEGAAPGDIKKWREAEIKHGRVAMLASLGVLV
AEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTA
FETPSAVTGEGGLKDSYSPGDLGFDPLGLKPKTEADLVTMQTKELNNGRL
AMIGIAGMLVQELINPADILG*
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mRNA from alignment at L-elsbetiae_contig5207:8028..10545-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5207.13303.1 ID=mRNA_L-elsbetiae_contig5207.13303.1|Name=mRNA_L-elsbetiae_contig5207.13303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2518bp|location=Sequence derived from alignment at L-elsbetiae_contig5207:8028..10545- (Laminarionema elsbetiae ELsaHSoW15)
CCTCTCTCCTCTCTCCCCACCCACATTCAAGCAAGATGACTCTCGGCACC TCCACCCAGTTGTTCCTCGGCACCGCCGCCACCCTAATCGCCTCGTCCAC GGCTTTCGTCGCCCCCATGACCGTGCGATCCGTGGCACCTTCGTCGAGCC TCAAGATGCAGAGCGCTGGCTCCGCGTACGTCGAGACCCTGCCTGGCGCT CCCTTCTCTGACGGAAAGGTGAGTACAGCAGTCATCTGAGTGCTGAGGTT GCGCATATCGTCCGGCTTTTTCAACGAGAGCACTCCATATGTGTGGGTGC AACACACCAACCGCGACGCACCACCTGCAAACGGTTCGCTGACTCCATAG CAGATGGGTGTAGCTCAGCTCTCTCTACGTTAGACTATAGATGTTCGAAT GCGAACACAGCTACGGCATCTGCCACGTCGTAAGTAAGCTGCTACAAATG TACCCTCCTCACCCCTCAACCCCAGTTCTAACTTGTTGTGTACACTGCTG CTACCCTACCGCTGCACACTCACGCCGTCCCACCTGCTTCCCACCGCAGA TCTTCGACCCGCTCGGCCTGTCGGAGGGCGCTGCCCCCGGCGACATCAAG AAGTGGCGCGAGGCCGAGATCAAGCACGGACGCGTAGCCATGCTCGCATC GCTCGGTGTTCTAGTCGCAGAGGTATATATGTACATAACAAAATAGTAAA TGCTGGCTTCTGTCGTAGCTCGGTACCTGAGAGCGTTCCCTCTTTCGGGC ATGCCTCTTCCACCCATCTTTGTAGACCACGTTTGTGTGTGTGGAGCTGA TGAATATTTGAAGCGATGTCGAGCCAAAACCGCAATGCCCTTCTTGAAAC CCCGGCGACGCAAACCCCTGTTCTGTACGCCATCGGCTCTGACGTGAAGC TCTCATGAATTGTTGTCTCTCCCTCTCTGATCTTGATCTGACACGAGCTG CTGCTGTTGGTGCTGTGTTTGCTGTTCGCTCTGCAGGAGTACCACCCGTT CTTCATGGGCCCTGACTACATCGGCCCCGCCGTGGACCACTTCCAGGAGA TCTCCGCCCAGTATCCCGAGGTGAGGATTAGGATTGCTATAACCTACATA CATGTATCACAACCATATTTAGTGGCTGCGATGGAGTGGAATGCATGCGC ACCCGGCGGCTGCGCGTACCTCAAGCGCACGCTCTCAAGAGATGATGGAC CGTCGCGCTTTTGAAGTGTCCCTCAAGGGCTTTGAGTCTAGTCTTATTGA CGTACTGCCCTAAATAGGGCCGCGAACAGCATGTCACAGGGCTCTTTACT TAGCACAAGATCAGAACACGGTAGTGTTCCGCCAGTATATGACGTATCAC AGCTGCTTTGTTTGGCTTCGCCTTTGAAGACTCGTAAAACCGCTTTCCTA GAGCAGAGAACGCATGTACGCTTACAATCGCTGGTCTGTGCCGGAGTTGT ACCTGCAACTGCATGCTCCCACGAACAGAACAGAACAGCTCAAAAACAAG AATTTTATGATGGTACCGGCAGGGTGCAGTCATTTACTTTCCACGGCGCT GGATACCGCGCTTTCGGGCCTCTTAGTTGTTGGGAATGTGCCGAATGCAT CACGCATGGCTGTATTTATGTTGGTCCCAACCCGCTCTCCCCCCTCGTCT GACTACGTGAACTTTTCTGATATCGCAAGTCAATATCTCCATCTCACTTG ATCTTCCACGCACTTCCTTGCTTCCATATACTTGCAGTTCTGGGTGTTCT CCCTCCTGGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCGTTC GAGACGCCTAGCGCCGTGACCGGCGAGGGCGGCCTCAAGGACAGCTACAG CCCGGGAGACCTCGGCTTCGACCCGCTCGGTCTCAAGCCCAAGACCGAGG CGGACCTCGTGACGATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCC ATGATCGGCATCGCCGGCATGTTGGTGCAGGAGCTCATCAACCCGGCGGA CATCCTCGGCTGATGATGACTACGTCAATGCTCAATAGATTGAAACGCCT CGGCAGTAGTCATTTCGAACACGCAATCAGCAGTGGGGAGATGGGTGGTT TTGGCTCTCACGAAGTGGACACCCTGAAGCGCGATGATCGAAGATGATAC AGGAGTTCTACTGTAGCGTAGGCTCTAATCTGGAGTGGAAGGTGTCCGGT GGCTCACGCATTGCGTGCGTGTATATATGTGTACCTTGTTGATAGTGTAG ATTGATTTGTGGGATACCTTTTTCTACTGGCATGGGCAGGAGTCGCCGTT CGCGTTGCCAAATTAGAAGATAAGTTGCTTGATGCCATATAGTCGCAAGT CAGTTGCACGAAGCGTTGGTCTGGTTTGAAGTTGGCGCGGCTAAAGTGTT CGTCGTGGGTTAATGATTATTTTTCGGAGGTGAAATAGTCTGCCTCGCGT ATGTGTGGTTCCGTCACCAAAGAACTGGCAGTTAGAAAAATAACCAAAGA ACTGGCAGTTGGAAAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5207:8028..10545-

>mRNA_L-elsbetiae_contig5207.13303.1 ID=mRNA_L-elsbetiae_contig5207.13303.1|Name=mRNA_L-elsbetiae_contig5207.13303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig5207:8028..10545- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTCTCGGCACCTCCACCCAGTTGTTCCTCGGCACCGCCGCCACCCT
AATCGCCTCGTCCACGGCTTTCGTCGCCCCCATGACCGTGCGATCCGTGG
CACCTTCGTCGAGCCTCAAGATGCAGAGCGCTGGCTCCGCGTACGTCGAG
ACCCTGCCTGGCGCTCCCTTCTCTGACGGAAAGATGACTCTCGGCACCTC
CACCCAGTTGTTCCTCGGCACCGCCGCCACCCTAATCGCCTCGTCCACGG
CTTTCGTCGCCCCCATGACCGTGCGATCCGTGGCACCTTCGTCGAGCCTC
AAGATGCAGAGCGCTGGCTCCGCGTACGTCGAGACCCTGCCTGGCGCTCC
CTTCTCTGACGGAAAGATCTTCGACCCGCTCGGCCTGTCGGAGGGCGCTG
CCCCCGGCGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGACGC
GTAGCCATGCTCGCATCGCTCGGTGTTCTAGTCGCAGAGATCTTCGACCC
GCTCGGCCTGTCGGAGGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGCG
AGGCCGAGATCAAGCACGGACGCGTAGCCATGCTCGCATCGCTCGGTGTT
CTAGTCGCAGAGGAGTACCACCCGTTCTTCATGGGCCCTGACTACATCGG
CCCCGCCGTGGACCACTTCCAGGAGATCTCCGCCCAGTATCCCGAGGAGT
ACCACCCGTTCTTCATGGGCCCTGACTACATCGGCCCCGCCGTGGACCAC
TTCCAGGAGATCTCCGCCCAGTATCCCGAGTTCTGGGTGTTCTCCCTCCT
GGGCATGGCCTTCATCGAGTACAACACCATCATGACCGCGTTCGAGACGC
CTAGCGCCGTGACCGGCGAGGGCGGCCTCAAGGACAGCTACAGCCCGGGA
GACCTCGGCTTCGACCCGCTCGGTCTCAAGCCCAAGACCGAGGCGGACCT
CGTGACGATGCAGACCAAGGAGCTCAACAACGGCCGCCTGGCCATGATCG
GCATCGCCGGCATGTTGGTGCAGGAGCTCATCAACCCGGCGGACATCCTC
GGCTGATTCTGGGTGTTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAA
CACCATCATGACCGCGTTCGAGACGCCTAGCGCCGTGACCGGCGAGGGCG
GCCTCAAGGACAGCTACAGCCCGGGAGACCTCGGCTTCGACCCGCTCGGT
CTCAAGCCCAAGACCGAGGCGGACCTCGTGACGATGCAGACCAAGGAGCT
CAACAACGGCCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTGCAGG
AGCTCATCAACCCGGCGGACATCCTCGGCTGA
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