mRNA_L-elsbetiae_contig52.13290.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig52.13290.1
Unique NamemRNA_L-elsbetiae_contig52.13290.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig52.13290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig52contigL-elsbetiae_contig52:64975..65980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000180.1
Exons2
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816533.1104505-CDS-L-elsbetiae_contig52:64974..651151622816533.1104505-CDS-L-elsbetiae_contig52:64974..65115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 64975..65115 +
1691683628.4193554-CDS-L-elsbetiae_contig52:64974..651151691683628.4193554-CDS-L-elsbetiae_contig52:64974..65115Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 64975..65115 +
1622816533.1255238-CDS-L-elsbetiae_contig52:65809..659801622816533.1255238-CDS-L-elsbetiae_contig52:65809..65980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 65810..65980 +
1691683628.4294086-CDS-L-elsbetiae_contig52:65809..659801691683628.4294086-CDS-L-elsbetiae_contig52:65809..65980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig52 65810..65980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig52.13290.1prot_L-elsbetiae_contig52.13290.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig52 64975..65980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig52.13290.1

>prot_L-elsbetiae_contig52.13290.1 ID=prot_L-elsbetiae_contig52.13290.1|Name=mRNA_L-elsbetiae_contig52.13290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
RTRHILQDWDVWLSKQDNKGNDVNLHLENIYLDELQEGELLLYERIKEKF
KNPLAEAEQFYLQYKLSSEQYPINIELSQKTQVMSAFKKFAALKQVCASE
TML*
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mRNA from alignment at L-elsbetiae_contig52:64975..65980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig52.13290.1 ID=mRNA_L-elsbetiae_contig52.13290.1|Name=mRNA_L-elsbetiae_contig52.13290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1006bp|location=Sequence derived from alignment at L-elsbetiae_contig52:64975..65980+ (Laminarionema elsbetiae ELsaHSoW15)
CGAACCAGGCATATCTTGCAAGACTGGGACGTGTGGCTGTCGAAACAGGA
TAACAAGGGCAATGATGTTAATCTCCATCTTGAAAATATCTACTTGGATG
AGCTACAAGAGGGCGAATTACTGCTGTACGAAAGGATTAAGGTACTCTAT
GTAACTTTGTTTTCTTGTAGAAGTAATCTAGCCAAGCAGAATCCTAACGT
TTGGTCGAAGCAGGGACAGAGTACCTGGTTCCGGGCAGCATCGGTATGTG
GATGTTCAAAATGACGCCGAACAGAAGTTTATCTACGCACAAGAGAGGTA
ATATTTAGCTGTGCTAGATATAACTCGTGTCTGCCTGGTATACGAAGAGA
GCCTCAAACAACGTGGAATACTTTTGTAAATACGGCAACATTTTTCGAGC
AAGTGACGGCAGACTAGATACTACGCACCAGCCAGCGATGCCCTTCTTTG
GCAATAATCCAATACGACGGTCCACACGTCCTGTGGCAGGCTAGGAGCCT
GCCAAGTTTCGGGGCTCTTTTTCACTTCAGGGCCCGCGAATTTTAATCCA
AATCATCGATTTATGAACGAAGATCCGCATCGTGTGCGAGGCACTTCTGC
CCCCTTCCTTCATAAACCCATTGCGGTGCCCTATTTGATAATGTAGATTT
GTTGCGATGAAAACACACCCTTGCTTGCATGGGGCCCGTGCACGACCTTG
AGACAGGAAACGTCTTTACACGCGAGCTGTGCATCATCTACAATTAGGTC
CATGTGGTGATTGATCCCTTATGCTTGATGACGTTTTGGATGTACACACG
CTACTTCTTTATATTGTATCTATCTTTGCGTGTAGGAAAAGTTCAAGAAT
CCCTTGGCGGAAGCGGAGCAATTCTACCTCCAATACAAGCTCTCGTCCGA
GCAATACCCCATCAACATAGAGCTTTCGCAGAAGACTCAAGTCATGTCGG
CTTTCAAGAAGTTCGCAGCATTGAAACAGGTATGTGCGAGCGAAACTATG
TTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig52:64975..65980+

>mRNA_L-elsbetiae_contig52.13290.1 ID=mRNA_L-elsbetiae_contig52.13290.1|Name=mRNA_L-elsbetiae_contig52.13290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig52:64975..65980+ (Laminarionema elsbetiae ELsaHSoW15)
CGAACCAGGCATATCTTGCAAGACTGGGACGTGTGGCTGTCGAAACAGGA
TAACAAGGGCAATGATGTTAATCTCCATCTTGAAAATATCTACTTGGATG
AGCTACAAGAGGGCGAATTACTGCTGTACGAAAGGATTAAGCGAACCAGG
CATATCTTGCAAGACTGGGACGTGTGGCTGTCGAAACAGGATAACAAGGG
CAATGATGTTAATCTCCATCTTGAAAATATCTACTTGGATGAGCTACAAG
AGGGCGAATTACTGCTGTACGAAAGGATTAAGGAAAAGTTCAAGAATCCC
TTGGCGGAAGCGGAGCAATTCTACCTCCAATACAAGCTCTCGTCCGAGCA
ATACCCCATCAACATAGAGCTTTCGCAGAAGACTCAAGTCATGTCGGCTT
TCAAGAAGTTCGCAGCATTGAAACAGGTATGTGCGAGCGAAACTATGTTG
TAGGAAAAGTTCAAGAATCCCTTGGCGGAAGCGGAGCAATTCTACCTCCA
ATACAAGCTCTCGTCCGAGCAATACCCCATCAACATAGAGCTTTCGCAGA
AGACTCAAGTCATGTCGGCTTTCAAGAAGTTCGCAGCATTGAAACAGGTA
TGTGCGAGCGAAACTATGTTGTAG
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