prot_L-elsbetiae_contig5196.13282.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5196.13282.1
Unique Nameprot_L-elsbetiae_contig5196.13282.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length107
Homology
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BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Match: D7G6K1_ECTSI (CRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K1_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 4.290e-46
Identity = 85/107 (79.44%), Postives = 90/107 (84.11%), Query Frame = 0 
Query:    1 VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLAEVGLELTGKAGGAASEGEGDEDATSPGVGVSVVKVNPNQKTILFANTEFLAAQARGE 107
            V+ LW RV+KQL+SVGKGGIK SHVRSLNSLIAAHTLVKVKVNIP ADL EVGLEL GK G A   G+GDE   SP VGVSVV VNPNQK ILFANTEFLA+QARGE
Sbjct:   22 VEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELAGKGGLALGGGDGDE--ASPAVGVSVVTVNPNQKVILFANTEFLASQARGE 126
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BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Match: A0A6H5JP08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP08_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 5.900e-43
Identity = 82/107 (76.64%), Postives = 87/107 (81.31%), Query Frame = 0 
Query:    1 VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLAEVGLELTGKAGGAASEGEGDEDATSPGVGVSVVKVNPNQKTILFANTEFLAAQARGE 107
            V+ LW RV+KQL+SVGKGGIK SHVRSLNSLIAAHTLVKVKVNIP ADL EVGLEL GK G     G GD D  S  VGVSVV VNPNQK ILFANT+FLA+QARGE
Sbjct:   99 VEELWMRVKKQLISVGKGGIKPSHVRSLNSLIAAHTLVKVKVNIPNADLEEVGLELVGKGG--LKSGGGDGDEASRAVGVSVVTVNPNQKVILFANTDFLASQARGE 203
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BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Match: A0A7R9XYF3_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XYF3_9VIRI)

HSP 1 Score: 53.1 bits (126), Expect = 5.870e-6
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0 
Query:    1 VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLAEVGLELTG---KAGGAAS 65
            V+  W  VRKQL+SVG+ G+++SH  SL   + AH+LVKVK+     D      ELT    +AGG+++
Sbjct:   64 VRAAWDSVRKQLISVGRAGVRQSHANSLAEALRAHSLVKVKLASDAMDAGRAAAELTALVKRAGGSSA 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5196.13282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6K1_ECTSI4.290e-4679.44CRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JP08_9PHAE5.900e-4376.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9XYF3_9VIRI5.870e-642.65Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001890RNA-binding, CRM domainPFAMPF01985CRS1_YhbYcoord: 10..63
e-value: 1.3E-4
score: 22.1
IPR035920YhbY-like superfamilySUPERFAMILY75471YhbY-likecoord: 10..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5196contigL-elsbetiae_contig5196:3624..6989 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5196.13282.1mRNA_L-elsbetiae_contig5196.13282.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5196 3624..6989 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5196.13282.1 ID=prot_L-elsbetiae_contig5196.13282.1|Name=mRNA_L-elsbetiae_contig5196.13282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
VKVLWRRVRKQLMSVGKGGIKESHVRSLNSLIAAHTLVKVKVNIPYADLA
EVGLELTGKAGGAASEGEGDEDATSPGVGVSVVKVNPNQKTILFANTEFL
AAQARGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001890RNA-binding_CRM
IPR035920YhbY-like_sf