mRNA_L-elsbetiae_contig5187.13271.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5187.13271.1
Unique NamemRNA_L-elsbetiae_contig5187.13271.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5187.13271.1 vs. uniprot
Match: A0A6H5KNW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.670e-34
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 3 
Query:    3 MVGAAESLAITLSAVARTS-----ECTVLSCHERRWAGDKGAFFFETLSRRGFRVESVDPGGIDERYRGDCGISFSRIHL 227
            ++GAAE+LAITLSAV R+S     EC +LSCHERRWAGDKGAFFFET++RRGF+VE+VDP  IDERY GDCGI+FSRI L
Sbjct:  100 VIGAAEALAITLSAVVRSSRAASSECVILSCHERRWAGDKGAFFFETMARRGFQVEAVDPEDIDERYAGDCGIAFSRIRL 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5187.13271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNW3_9PHAE2.670e-3473.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5187contigL-elsbetiae_contig5187:7519..8129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5187.13271.1prot_L-elsbetiae_contig5187.13271.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5187 7521..8121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.9189215-UTR-L-elsbetiae_contig5187:7518..75201622816530.9189215-UTR-L-elsbetiae_contig5187:7518..7520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5187 7519..7520 +
1691683626.8332229-UTR-L-elsbetiae_contig5187:7518..75201691683626.8332229-UTR-L-elsbetiae_contig5187:7518..7520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5187 7519..7520 +
1622816530.9588506-UTR-L-elsbetiae_contig5187:8121..81291622816530.9588506-UTR-L-elsbetiae_contig5187:8121..8129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5187 8122..8129 +
1691683626.8608992-UTR-L-elsbetiae_contig5187:8121..81291691683626.8608992-UTR-L-elsbetiae_contig5187:8121..8129Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5187 8122..8129 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816530.9354832-CDS-L-elsbetiae_contig5187:7520..76091622816530.9354832-CDS-L-elsbetiae_contig5187:7520..7609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5187 7521..7609 +
1691683626.842906-CDS-L-elsbetiae_contig5187:7520..76091691683626.842906-CDS-L-elsbetiae_contig5187:7520..7609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5187 7521..7609 +
1622816530.9478176-CDS-L-elsbetiae_contig5187:7970..81211622816530.9478176-CDS-L-elsbetiae_contig5187:7970..8121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5187 7971..8121 +
1691683626.851948-CDS-L-elsbetiae_contig5187:7970..81211691683626.851948-CDS-L-elsbetiae_contig5187:7970..8121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5187 7971..8121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5187.13271.1

>prot_L-elsbetiae_contig5187.13271.1 ID=prot_L-elsbetiae_contig5187.13271.1|Name=mRNA_L-elsbetiae_contig5187.13271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MVGAAESLAITLSAVARTSECTVLSCHERRWAGDKGAFFFETLSRRGFRV
ESVDPGGIDERYRGDCGISFSRIHLRSST*
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mRNA from alignment at L-elsbetiae_contig5187:7519..8129+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5187.13271.1 ID=mRNA_L-elsbetiae_contig5187.13271.1|Name=mRNA_L-elsbetiae_contig5187.13271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=611bp|location=Sequence derived from alignment at L-elsbetiae_contig5187:7519..8129+ (Laminarionema elsbetiae ELsaHSoW15)
CGATGGTTGGCGCGGCGGAATCCCTGGCGATAACGCTGAGCGCCGTGGCC
CGCACGAGCGAGTGCACTGTTCTGAGTTGCCACGAGCGGAGGTGAGAGAG
CGAGTAGTGCTGGCCGACTGCCGAGTCCTCGGAGGTGCCTCTCCCTGTCC
TCTCTCCCTCGCCGGAAGCACCGAGAGAACACGTGTTCCGTGTAATTTAG
CGCCCATGTGCTCTCGGAAATGGTCGCAACAGAACTACCGGGCAACGGGG
GGTGAGAACGGGCCCCCGTCCAATGCCCCCAAAAAGTAGCAAGTACATCT
GATATCCAACCTTTTCAGACACTTTTAGCACCAAATGAGGGCTTTTCCCT
CCCTGATGCCTGCCCCAGTACACCCTCTCATTCTGCAACCCGCTGCTGCC
GCTGCTGCGCGTTTGTGATGCGTCACGCTTTTGCCATCAAACTGATGATC
AGATGGGCCGGAGACAAGGGTGCTTTTTTTTTCGAGACGTTGTCTAGGAG
AGGGTTTCGCGTGGAGTCGGTCGACCCGGGTGGGATTGACGAGCGATATC
GGGGGGATTGCGGCATCTCTTTCTCGCGGATACATTTGCGGAGTTCTACG
TAGGAGGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5187:7519..8129+

>mRNA_L-elsbetiae_contig5187.13271.1 ID=mRNA_L-elsbetiae_contig5187.13271.1|Name=mRNA_L-elsbetiae_contig5187.13271.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig5187:7519..8129+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGGCGCGGCGGAATCCCTGGCGATAACGCTGAGCGCCGTGGCCCG
CACGAGCGAGTGCACTGTTCTGAGTTGCCACGAGCGGAGATGGTTGGCGC
GGCGGAATCCCTGGCGATAACGCTGAGCGCCGTGGCCCGCACGAGCGAGT
GCACTGTTCTGAGTTGCCACGAGCGGAGATGGGCCGGAGACAAGGGTGCT
TTTTTTTTCGAGACGTTGTCTAGGAGAGGGTTTCGCGTGGAGTCGGTCGA
CCCGGGTGGGATTGACGAGCGATATCGGGGGGATTGCGGCATCTCTTTCT
CGCGGATACATTTGCGGAGTTCTACGTAGATGGGCCGGAGACAAGGGTGC
TTTTTTTTTCGAGACGTTGTCTAGGAGAGGGTTTCGCGTGGAGTCGGTCG
ACCCGGGTGGGATTGACGAGCGATATCGGGGGGATTGCGGCATCTCTTTC
TCGCGGATACATTTGCGGAGTTCTACGTAG
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