prot_L-elsbetiae_contig5153.13231.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5153.13231.1
Unique Nameprot_L-elsbetiae_contig5153.13231.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length581
Homology
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 3.620e-38
Identity = 328/600 (54.67%), Postives = 365/600 (60.83%), Query Frame = 0
Query:    1 YCAACQGPFGLDVSGSSNTAELKMILEEAVMIQRERESVAELMEQKTAIRDALKSAADDAEKARLLGEMRSLTTKLYSLSGKAKIQGIIAHLRALLTADDNPEERLSGDDGRVAP----GSASPASAXXXXXXXXXXXXXXXXXXXKSGKRGK----PAAAGIGPGGLWKKAGGDXXXXXXXXXXXXXWVCSRCTYANPTSRPYCDVCDNLRPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAPQAKSGRHSAPGDGVDTGRKPSRTKRRRLVKAGGEDDGDEAFAVSEGGKRAGISRSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGADEQEYEDEGRAPGAGSRXXXXXXXXXXXRRSTTXXXXXXXRGRYGDEMGSGDDVESADGDGGYDGGYGGEXXXXXXXXFVVVSSRE--PAKPTGSSRTVTGKGKERGGRRGGRGSKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------KNPQKLVVFAHHKEVMDALENGLGDIGVSSVRIDGHTAQKKRQPIVDRFQ 581
            YCAA QGPFGLDV+GSSN+AELKMILE A+M++R +E VAELMEQK AI+ +L S ADDAE  RL+G+M+SLTTKLY  SG+AKIQG++ HLR +LT +   E    G  G V+P    G  +P   XXXXXXXXXXXXXXXXXXX           P   G GPGGLW     D     XXXXXX  W CSRCTY NP S+  CD+CD  R  AA           XXXXXXXXXXXXXXXXXXXXXXXX       XXXXXX                           +        G G   G      ++RRLVKA  E+  +EA AV              XXXXXXX  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +  +    PG G R  XXXXXXXXX     XXXXXXX GRYGD++ S + ++               XXXXXXXXF++   R   PAK   SS              GG+G    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         K P+KLVVFAHHKEVMDALE GL +IGV SVRIDG TAQKKRQPIVDRFQ
Sbjct:  296 YCAAFQGPFGLDVTGSSNSAELKMILEAAIMVRRLKEEVAELMEQKEAIKSSLGSVADDAEMGRLVGQMKSLTTKLYIESGRAKIQGVLDHLRGMLTEELPAEGHPPG--GGVSPNRTGGGGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATPPLPRGKGPGGLWGNVSVDDGDEGXXXXXXE-WACSRCTYHNPASQRECDLCDTPRSVAAAAPGAKQAGSSXXXXXXXXXXXXXXXXXXXXXXXXRAENGKDXXXXXXDAWIV---------------------DSDEXXXXVRGSGKKVG-----GRKRRLVKA--EEXXNEAVAVDSXXXXXXXXXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVEVLPVPGKGRRSGXXXXXXXXX---XXXXXXXXXXGRYGDDVSSDEGLDXX------------XXXXXXXXXFILTKKRGKLPAKDLLSS--------------GGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSSASKAKEPRKLVVFAHHKEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQ 835          
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Match: A0A6H5JCM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM3_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.830e-14
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 0
Query:  532 KNPQKLVVFAHHKEVMDALENGLGDIGVSSVRIDGHTAQKKRQPIVDRFQ 581
            K P+KLVVFAHHKEVMDALE GL +IGV SVRIDG TAQKKRQPIVDRFQ
Sbjct:  384 KEPRKLVVFAHHKEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQ 433          
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Match: A0A7S2FN75_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FN75_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 8.890e-5
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 0
Query:  535 QKLVVFAHHKEVMDALENGLGDIGVSSVRIDGHTAQKKRQPIVDRFQ 581
            +KL+VFAHH+E++DA+ + L    V+++RIDG T  KKRQ +V+ FQ
Sbjct:   22 EKLLVFAHHQEMLDAVSDALKQRRVATMRIDGRTTAKKRQALVESFQ 68          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LK86_ECTSI3.620e-3854.67Harp (Smarcal1)-related n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCM3_9PHAE1.830e-1486.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FN75_9EUKA8.890e-551.06Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..63
NoneNo IPR availableGENE3D3.40.50.300coord: 522..581
e-value: 4.1E-8
score: 34.6
NoneNo IPR availableGENE3D2.20.28.140coord: 178..231
e-value: 9.8E-10
score: 40.1
NoneNo IPR availablePANTHERPTHR45766FAMILY NOT NAMEDcoord: 533..581
coord: 1..99
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 179..203
e-value: 3.9E-5
score: 33.1
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 180..205
e-value: 1.7E-6
score: 27.2
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 181..200
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 177..206
score: 8.547
IPR030101SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1PANTHERPTHR45766:SF3SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1coord: 533..581
coord: 1..99
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 532..581
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 178..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5153contigL-elsbetiae_contig5153:3836..13114 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5153.13231.1mRNA_L-elsbetiae_contig5153.13231.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5153 3836..13114 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5153.13231.1 ID=prot_L-elsbetiae_contig5153.13231.1|Name=mRNA_L-elsbetiae_contig5153.13231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=581bp
YCAACQGPFGLDVSGSSNTAELKMILEEAVMIQRERESVAELMEQKTAIR
DALKSAADDAEKARLLGEMRSLTTKLYSLSGKAKIQGIIAHLRALLTADD
NPEERLSGDDGRVAPGSASPASAGSVATAAAGAGAAPAAGRGKSGKRGKP
AAAGIGPGGLWKKAGGDSGGDDGGGGGGGGWVCSRCTYANPTSRPYCDVC
DNLRPKAAAAAAAAEVKEDVRKASVKEQNGGAPRPRKNGGGGGGGSLGCA
RNAKGGSDDDASWFAESDDSGEGGGGGGKDAPQAKSGRHSAPGDGVDTGR
KPSRTKRRRLVKAGGEDDGDEAFAVSEGGKRAGISRSISSSSSSRKRRAA
STTTKKRRRRAIVTSDEGSEGNSSDDTRQQGADEQEYEDEGRAPGAGSRG
SGGSGGSGGSRRSTTPGGGGGGRGRYGDEMGSGDDVESADGDGGYDGGYG
GEDDDDNGDDFVVVSSREPAKPTGSSRTVTGKGKERGGRRGGRGSKGGGG
RGPGAGRGKNGRGGGGGGGAAAAAASSKAKAKNPQKLVVFAHHKEVMDAL
ENGLGDIGVSSVRIDGHTAQKKRQPIVDRFQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR030101HARP(SMARCAL1)
IPR027417P-loop_NTPase
IPR036443Znf_RanBP2_sf