mRNA_L-elsbetiae_contig5153.13231.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI) HSP 1 Score: 161 bits (408), Expect = 3.620e-38 Identity = 328/600 (54.67%), Postives = 365/600 (60.83%), Query Frame = 1 Query: 1 YCAACQGPFGLDVSGSSNTAELKMILEEAVMIQRERESVAELMEQKTAIRDALKSAADDAEKARLLGEMRSLTTKLYSLSGKAKIQGIIAHLRALLTADDNPEERLSGDDGRVAP----GSASPASAXXXXXXXXXXXXXXXXXXXKSGKRGK----PAAAGIGPGGLWKKAGGDXXXXXXXXXXXXXWVCSRCTYANPTSRPYCDVCDNLRPKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAPQAKSGRHSAPGDGVDTGRKPSRTKRRRLVKAGGEDDGDEAFAVSEGGKRAGISRSISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGADEQEYEDEGRAPGAGSRXXXXXXXXXXXRRSTTXXXXXXXRGRYGDEMGSGDDVESADGDGGYDGGYGGEXXXXXXXXFVVVSSRE--PAKPTGSSRTVTGKGKERGGRRGGRGSKGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------KNPQKLVVFAHHKEVMDALENGLGDIGVSSVRIDGHTAQKKRQPIVDRFQ 1743 YCAA QGPFGLDV+GSSN+AELKMILE A+M++R +E VAELMEQK AI+ +L S ADDAE RL+G+M+SLTTKLY SG+AKIQG++ HLR +LT + E G G V+P G +P XXXXXXXXXXXXXXXXXXX P G GPGGLW D XXXXXX W CSRCTY NP S+ CD+CD R AA XXXXXXXXXXXXXXXXXXXXXXXX XXXXXX + G G G ++RRLVKA E+ +EA AV XXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + + PG G R XXXXXXXXX XXXXXXX GRYGD++ S + ++ XXXXXXXXF++ R PAK SS GG+G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K P+KLVVFAHHKEVMDALE GL +IGV SVRIDG TAQKKRQPIVDRFQ Sbjct: 296 YCAAFQGPFGLDVTGSSNSAELKMILEAAIMVRRLKEEVAELMEQKEAIKSSLGSVADDAEMGRLVGQMKSLTTKLYIESGRAKIQGVLDHLRGMLTEELPAEGHPPG--GGVSPNRTGGGGTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSATPPLPRGKGPGGLWGNVSVDDGDEGXXXXXXE-WACSRCTYHNPASQRECDLCDTPRSVAAAAPGAKQAGSSXXXXXXXXXXXXXXXXXXXXXXXXRAENGKDXXXXXXDAWIV---------------------DSDEXXXXVRGSGKKVG-----GRKRRLVKA--EEXXNEAVAVDSXXXXXXXXXXXXXXXXXXXGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEVEVLPVPGKGRRSGXXXXXXXXX---XXXXXXXXXXGRYGDDVSSDEGLDXX------------XXXXXXXXXFILTKKRGKLPAKDLLSS--------------GGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSSASKAKEPRKLVVFAHHKEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQ 835
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Match: A0A6H5JCM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM3_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.830e-14 Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 1 Query: 1594 KNPQKLVVFAHHKEVMDALENGLGDIGVSSVRIDGHTAQKKRQPIVDRFQ 1743 K P+KLVVFAHHKEVMDALE GL +IGV SVRIDG TAQKKRQPIVDRFQ Sbjct: 384 KEPRKLVVFAHHKEVMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQ 433
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Match: A0A7S2FN75_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FN75_9EUKA) HSP 1 Score: 54.3 bits (129), Expect = 8.890e-5 Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1 Query: 1603 QKLVVFAHHKEVMDALENGLGDIGVSSVRIDGHTAQKKRQPIVDRFQ 1743 +KL+VFAHH+E++DA+ + L V+++RIDG T KKRQ +V+ FQ Sbjct: 22 EKLLVFAHHQEMLDAVSDALKQRRVATMRIDGRTTAKKRQALVESFQ 68 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5153.13231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5153.13231.1 >prot_L-elsbetiae_contig5153.13231.1 ID=prot_L-elsbetiae_contig5153.13231.1|Name=mRNA_L-elsbetiae_contig5153.13231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=581bp YCAACQGPFGLDVSGSSNTAELKMILEEAVMIQRERESVAELMEQKTAIRback to top mRNA from alignment at L-elsbetiae_contig5153:3836..13114+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5153.13231.1 ID=mRNA_L-elsbetiae_contig5153.13231.1|Name=mRNA_L-elsbetiae_contig5153.13231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9279bp|location=Sequence derived from alignment at L-elsbetiae_contig5153:3836..13114+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5153:3836..13114+ >mRNA_L-elsbetiae_contig5153.13231.1 ID=mRNA_L-elsbetiae_contig5153.13231.1|Name=mRNA_L-elsbetiae_contig5153.13231.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3486bp|location=Sequence derived from alignment at L-elsbetiae_contig5153:3836..13114+ (Laminarionema elsbetiae ELsaHSoW15)back to top |