mRNA_L-elsbetiae_contig515.13224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig515.13224.1
Unique NamemRNA_L-elsbetiae_contig515.13224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig515.13224.1 vs. uniprot
Match: D8LEI4_ECTSI (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI4_ECTSI)

HSP 1 Score: 380 bits (977), Expect = 1.540e-118
Identity = 216/366 (59.02%), Postives = 251/366 (68.58%), Query Frame = 3
Query:  624 IVVVLQGVWDGTRDNGKDP----------HDPYRPALSCLAVLSIGILLHLVAPSLGGFLLRQLDDVRLARLLPSGDRRCARWGWKTAKECFATSVVFGLCITAAALSGGGPLLLGLGMTHSVVSASREALPVIRKGWLKRKMSRRKSTM------------AAPSSTHEFSLQGVITLIRSGPTQVVCSPVILPTFVLWMTHSTICSWPKECTDRLVFLLKVSATTVCTTHLMQPSLPKAGAPAQGNADDSS-------------GS----TAWVNKAFVCVCSSAAWTLLLLCCLIVLGHQESSEGILAMVLVVTIVALRTRHERTWRGLMLVFWVALLAILVNAACSKLMQQNKVFRRVFSDD 1604
            +VV+LQGVWD   +N +             + YRP LSC AVLS+   +  VAP LG FLL QLDDVRL R   S DRRC RWGWKTAKEC ATS+VFGLCITAA +SGGG LLLGLGMTHSVVSA REA+PVIRKGWL+R+MSR                 AA  S    SL+GV+  IRSGPT+VVCSPV+LP FVLWMT+STICSWPKECT+RL FLL+V A TVCT HL +     A   A+ +   SS             GS    T W+++A VC C+ AAW  LLLCCL+V G +ESSEGIL  VLVVT VALR+  E++WRGLML FWVALLA+L+NAA  KL+QQNKVF RVFSD+
Sbjct:    1 MVVILQGVWDEGFENEEREGXXXXXXFPRKEFYRPCLSCFAVLSLAAAVQCVAPRLGEFLLCQLDDVRLLRR-GSVDRRCERWGWKTAKECLATSLVFGLCITAAVVSGGGALLLGLGMTHSVVSAGREAVPVIRKGWLRRRMSRGXXXXXXXXXXXXXXXPAAQGSG--LSLRGVLASIRSGPTRVVCSPVVLPAFVLWMTYSTICSWPKECTERLAFLLEVLAATVCTMHLARAPAAAAAVAAENDPRSSSTRHGNEAVLLVEGGSAVVATKWISRALVCACAVAAWAFLLLCCLVVFGRRESSEGILVAVLVVTAVALRSPREKSWRGLMLAFWVALLAVLLNAAALKLLQQNKVFHRVFSDE 363          
BLAST of mRNA_L-elsbetiae_contig515.13224.1 vs. uniprot
Match: A0A6H5JQP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQP3_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 3.850e-114
Identity = 225/421 (53.44%), Postives = 268/421 (63.66%), Query Frame = 3
Query:  372 KPLWQRFLPLIVSSAVL---FCLFFYFAAERPNDDSVHFALMCFIGGVVAVEATESAIKMFGGVHPAAIAAVSHFRANASGYMASFVIVVVL--QGVWDGTRDNGKDPHDPYRPALSCLAVLSIGILLHLVAPSLGGFLLRQLDDVRLARLLPSGDRRCAR-WGWKTAKECFATSVVFGLCITAAALSGGGPLLLGLGMTHSVVSASREALPVIRKGWLKRKMSRRKSTMAAPSSTHEFSLQGVITLIRSGPTQVVCSPVILPTFVLWMTHSTICSWPKECTDRLVFLLKVSATTVCTTHLMQPSLPKAGAPAQGNADDSSGSTAWVNKAFVC---VCSSAAWTLLLLCCLIVLGHQESSEGILAMVLVVTIVALRTRHERTWRGLMLVFWVALLAILVNAACSKLMQQNKVFRRVFSDDV 1607
            KPL QR LPL VS AVL   +CLF +F  E P++D V   L+C+IGGVV VEA ESAI+ F G+H A    V+HFRA+AS YMASFVI+V +  Q V+ G  D             S LAVL+ G L+H VAP LGG         R A+    G    +R W W+ AK+C   +V   L  TAA L  GG  LLGL +  +  +A +E    IR+GW        + T   PSST   SLQ V+T   SGPT+ V S V+LPT +LW+T+ T+CSWP+ECTD LVFLLK SATTVCTTHLMQ ++ +A A AQ N   SSGST W NKAFVC   VC  AAWTLLLLC   VLGHQES  GILA+V VVT+VA RTR ERTWRGLMLVF V LLAI+V  AC KL    +VF+RV S+DV
Sbjct:   42 KPLLQRLLPLAVSGAVLLGLYCLFSFFVVEWPHNDRVLLVLLCYIGGVVLVEAAESAIEWFKGLHTA----VAHFRASASTYMASFVIIVAVVPQDVYSGAGD-----------LRSSLAVLACGFLVHHVAPLLGGHQPEGGVSPRPAQSSDDGHSLPSRQWRWRAAKKCIPAAVGV-LLSTAATLVTGGGWLLGLEIAGAAWAAFQEMRLAIREGW--------RETRETPSSTQAISLQSVVTWFTSGPTRRVWSSVLLPTLLLWVTYRTVCSWPEECTDWLVFLLKASATTVCTTHLMQQTVREAVASAQDNG--SSGSTTWANKAFVCLRCVCCVAAWTLLLLCSFTVLGHQESFSGILAVVFVVTMVAFRTRCERTWRGLMLVFSVTLLAIMVRVACVKLFHIFEVFKRVTSNDV 436          
BLAST of mRNA_L-elsbetiae_contig515.13224.1 vs. uniprot
Match: D7FR82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR82_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 7.200e-111
Identity = 231/449 (51.45%), Postives = 271/449 (60.36%), Query Frame = 3
Query:  288 GKSRNLGAAKQNQXXXXXXXXXXXXXXXKPLWQRFLPLIVSSAVL---FCLFFYFAAERPNDDSVHFALMCFIGGVVAVEATESAIKMFGGVHPAAIAAVSHFRANASGYMASFVIVVVL--QGVWDGTRDNGKDPHDPYRPALSCLAVLSIGILLHLVAPSLGGFLLRQLDDVRLARLLPSGDRRCARWG-WKTAKECFATSVVFGLCITAAALSGGGPLLLGLGMTHSVVSASREALPVIRKGWLKRKMSRRKSTMAAPSSTHEFSLQGVITLIRSGPTQVVCSPVILPTFVLWMTHSTICSWPKECTDRLVFLLKVSATTVCTTHLMQPSLPKAGAPAQGNADDSSGSTAWVNKAFVC---VCSSAAWTLLLLCCLIVLGHQESSEGILAMVLVVTIVALRTRHERTWRGLMLVFWVALLAILVNAACSKLMQQNKVFRRVFSDDV 1607
            GK   + AA+ NQ               KPL Q  LPL VS AVL   +CLF +F  E P+DD V   L+C+IGGVV VEA ESAIK FGGVHPA    V+HFRA+AS YMASFVIVVV+  QGVW    D             S LAVLS G L++ VAP LGG         R A+    G     R   WK  K+C  T+V   L  TAA    GG LLLGL +  +  +A +E    +R+G        R  T   P ST + SLQGV+T   SGP + V SPV+LPT +LW+T+ T+CSWP++CT+ LVFLLK SAT+VCTTHLMQ ++ +A   AQ N   SSGST W +KAF C   VC  AAWTLLLLC   VLGH ES  GILA+VLVVTIVA R R ERTWRGLMLVF V LLAI+V  AC KL    +VF RV S DV
Sbjct:   23 GKKAKVSAAQNNQRQQL-----------KPLLQWLLPLAVSGAVLLGLYCLFSFFVVEWPHDDRVLLVLLCYIGGVVLVEAAESAIKRFGGVHPA----VAHFRADASTYMASFVIVVVVVTQGVWSRIGD-----------LRSSLAVLSCGFLVYQVAPLLGGHQPEGGVSPRPAQGSDGGHSLPFRKRIWKAVKKCIPTAVGV-LLSTAATFVTGGGLLLGLEIAGAAWTAFQEMRLALREG--------RPETQETPCSTQDVSLQGVVTWFTSGPMRRVWSPVLLPTLLLWVTYRTVCSWPEDCTEWLVFLLKASATSVCTTHLMQQTVREAVTSAQDNG--SSGSTTWADKAFECLRCVCCVAAWTLLLLCSFTVLGHHESFVGILAVVLVVTIVAFRIRCERTWRGLMLVFSVTLLAIMVRVACVKLFHIFEVFNRVRSKDV 434          
BLAST of mRNA_L-elsbetiae_contig515.13224.1 vs. uniprot
Match: A0A6H5JXR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR1_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 3.510e-91
Identity = 176/334 (52.69%), Postives = 206/334 (61.68%), Query Frame = 3
Query:  690 YRPALSCLAVLSIGILLHLVAPSLGGFLLRQLDDVRLARLLPSGDRRCARWGWKTAKECFATSVVFGLCITAAALSGGGPLLLGLGMTHSVVSASREALPVIRKGWLKRKMSRRKSTMAAPSSTHE----------FSLQGVITLIRSGPTQVVCSPVILPTFVLWMTHSTICSWPKECTDRLVFLLKVSATTVCTTHLMQPSLPKAGAPAQG--------NADDSS-----------GSTAWVNKAFVCVCSSAAWTLLLLCCLIVLGHQESSEGILAMVLVVTIVALRTRHERTWRGLMLVFWVALLAILVNAACSKLMQQNKVFRRVFSDD 1604
            YRP LSC  VLS+   +  VAP LG FLLRQLDDV L R   S D RC RWGWKTAKEC ATS VFGLCITAA +SGGG LLLGLGMTHSVVSA R+A+PVIRKGWL+R+MSR                        SL+GV+  I                       STI S PKECT+RL FLL+V A TVCT HL +     A   A+         + D+++            +T W ++A VC CS AAW  LL+CCL+V G +ESSEGIL  VLVVT VALR+  E +WRGLML FWVALLA+L+NAA  KL+QQN+VF RVFSD+
Sbjct:   38 YRPCLSCFGVLSLAAAVQHVAPRLGEFLLRQLDDVHLLRR-GSVDSRCERWGWKTAKECLATSAVFGLCITAAVVSGGGALLLGLGMTHSVVSAGRQAVPVIRKGWLRRRMSRXXXXXXXXXXXXXXXXPAAQGLGLSLRGVLASI-----------------------STIWSSPKECTERLAFLLEVLAATVCTMHLARAPAAAAAVAAENYPRSSPTRHGDEAALLVEGGKKCAVVATKWTSRALVCACSVAAWAPLLMCCLVVFGRRESSEGILVAVLVVTAVALRSSREMSWRGLMLAFWVALLAVLLNAAALKLLQQNRVFHRVFSDE 347          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig515.13224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEI4_ECTSI1.540e-11859.02Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
A0A6H5JQP3_9PHAE3.850e-11453.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR82_ECTSI7.200e-11151.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXR1_9PHAE3.510e-9152.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig515contigL-elsbetiae_contig515:16678..20514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score384.8
Seed ortholog evalue5.7e-104
Seed eggNOG ortholog2880.D8LEI4
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.solute:proton antiporter activity
EggNOG OGsCOG0475@1,KOG1650@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionCation/H exchanger
Ec32 orthologEc-21_004550.2
Exons4
Model size1607
Cds size1386
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig515.13224.1prot_L-elsbetiae_contig515.13224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig515 16678..20293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816526.879251-CDS-L-elsbetiae_contig515:16677..173661622816526.879251-CDS-L-elsbetiae_contig515:16677..17366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 16678..17366 -
1691683623.9427857-CDS-L-elsbetiae_contig515:16677..173661691683623.9427857-CDS-L-elsbetiae_contig515:16677..17366Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 16678..17366 -
1622816526.8903725-CDS-L-elsbetiae_contig515:17624..179381622816526.8903725-CDS-L-elsbetiae_contig515:17624..17938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 17625..17938 -
1691683623.9586983-CDS-L-elsbetiae_contig515:17624..179381691683623.9586983-CDS-L-elsbetiae_contig515:17624..17938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 17625..17938 -
1622816526.900647-CDS-L-elsbetiae_contig515:18214..185511622816526.900647-CDS-L-elsbetiae_contig515:18214..18551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 18215..18551 -
1691683623.969075-CDS-L-elsbetiae_contig515:18214..185511691683623.969075-CDS-L-elsbetiae_contig515:18214..18551Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 18215..18551 -
1622816526.913506-CDS-L-elsbetiae_contig515:20247..202931622816526.913506-CDS-L-elsbetiae_contig515:20247..20293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 20248..20293 -
1691683623.97899-CDS-L-elsbetiae_contig515:20247..202931691683623.97899-CDS-L-elsbetiae_contig515:20247..20293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig515 20248..20293 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816526.9250097-UTR-L-elsbetiae_contig515:20293..205141622816526.9250097-UTR-L-elsbetiae_contig515:20293..20514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig515 20294..20514 -
1691683623.988678-UTR-L-elsbetiae_contig515:20293..205141691683623.988678-UTR-L-elsbetiae_contig515:20293..20514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig515 20294..20514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig515.13224.1

>prot_L-elsbetiae_contig515.13224.1 ID=prot_L-elsbetiae_contig515.13224.1|Name=mRNA_L-elsbetiae_contig515.13224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=462bp
MVASTLVERTNGKLPTPFTGKAGKSRNLGAAKQNQQQQEQQQQRRRQRPP
KPLWQRFLPLIVSSAVLFCLFFYFAAERPNDDSVHFALMCFIGGVVAVEA
TESAIKMFGGVHPAAIAAVSHFRANASGYMASFVIVVVLQGVWDGTRDNG
KDPHDPYRPALSCLAVLSIGILLHLVAPSLGGFLLRQLDDVRLARLLPSG
DRRCARWGWKTAKECFATSVVFGLCITAAALSGGGPLLLGLGMTHSVVSA
SREALPVIRKGWLKRKMSRRKSTMAAPSSTHEFSLQGVITLIRSGPTQVV
CSPVILPTFVLWMTHSTICSWPKECTDRLVFLLKVSATTVCTTHLMQPSL
PKAGAPAQGNADDSSGSTAWVNKAFVCVCSSAAWTLLLLCCLIVLGHQES
SEGILAMVLVVTIVALRTRHERTWRGLMLVFWVALLAILVNAACSKLMQQ
NKVFRRVFSDDV
back to top

mRNA from alignment at L-elsbetiae_contig515:16678..20514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig515.13224.1 ID=mRNA_L-elsbetiae_contig515.13224.1|Name=mRNA_L-elsbetiae_contig515.13224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3837bp|location=Sequence derived from alignment at L-elsbetiae_contig515:16678..20514- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGATCTCCGGAGATTTAGCAGTCGACAGTCCCGAGATGTTCTATCT CAGGTTAGAACCATGGATGAACACGCGCCCCCCCTCCCTGCCAATGGCCC CCTAGCTAGTCTAAATACCTGTAAGAGCTAGGCACTAATATTTTACATTC CGGGCTGATACTACCGCAAAGGCTTCGGGCTACGCTTGGGTCGGTTGGGT GGGTCCCTTTGCATTGGCGCCATGGTGGCATCCACCCTCGTGGAGCGGAC CAACGGGAAACTACCAAGTGAGTTGGGGTTGCAAAGGAGAACGAAAGCAA GTCTAAAGATGCTATCAATTGCATGTTTTAATCATGCTTTCGTAAGGTTT TATACATATCATGCGTTGCAATCAAGTTCATTGCCGGCAGACCTTGTCCT TTCGGCGAAATTCCCAACACCCGTAGATAGATGTTCAACTGCGCGGGTAA AAAACAAGAGTCAACGGTCAGCAGGGGTCCACGATATATTCTTCATTCTA TGTACGTACATAGGACCCTGCTGTGCAGCGAACCATCTGCACCATCTATG AAGGCTGCACAGTCAGTCTCTCGCGGAACAAGTTGACCCCCACCACCACC AACAACGAATGTACGACTCAAGCCCAACCACTCCAGGTCCTACGGTAGCA CACAAGCAAGCACTCCCGGGGGAACAATTTTCAATACTCTAAAACTCCTA CAACTAAATAGGTACTGTCGTCGCTGATGCCATCACCACCGCATACAGCA CCTTTATCTCGGCGGGCGTGAACCGGCAAACGTTGGCAGGCGGACCCCTG CCAACAAACAGTACACCATTGTTTTTTGGAGGTAGCCGCGTCTTCGGCGC AGAAAGAAGAACGCAGGGGTTCCAGCCCTCAAACCACAACCACGACACTA AGGCCTAACCCAACCCTAAACCCTAACCCTCACCCAACCCCCCAAGCTAG GTTGGTTAGGTTTAAGGTCCCTGTACCCGGTCATCCAGCTTGTTGGCAAG GGTTTCCCGCCTGCCAACGTTGGTAGAAACCCGCGCGCCGCCTTTGTCTA ACCATGCGCACATGAGCCCTTTACTTCTCACATGAATGCGCACGTACATT ATGGATAGTCCAATAGTCTACATACCAGACCATCCAAATTTGATGAGCCT ATTCGCAGGGAAACAAGCAGTAGCGGGGGAGCTGTCATTCGGCTGCACCC ACGTATGTATGTAGTACGAGGGTAGGAAGTTCGCACTGGAGAGCAAAATC CTCACACCATACATTTCCATTTAGATCTAGACTTGGGATCTTCCGTTAGA TATGGTTCGTGGCCTCATGCGTTAGCAATGCCTTTGCTTTCGGCACATTC TTTGGGCTCAATCGCTCCCTGCTGTATCTAGTGATTTTCGACACAGTTCA TCCTACAATATTCGTAAAAAGCGCGGTGCGATGCATCCTTTGATATGAAC CCTGTTGACTGTGCTTTGTTCATTGTGCTGGCCGTCTTCAACTTTGCTCA ATTCACATGTTTTTTTCCCTGCTGGATCTCGGTTCTGTACCACCTTTCGC AAGCTTCCTAGGCAACCGGTCGCTTTGACGCCCCTACATCACTGACCATT ACGCCATGCCGCTCATATGTACCACAATGGTATTACCACCACCACTCCCT ACTTCTCCCATTTGTGGAAGGAGGGATGCATGAGGAAGAAGAGGTGTGCC TGTGAGCTTGTGACAACGTCCATTTAGGTTTTGGTGTGGGCAAAAACCTC GCTTCAAGTCATGGAGTGTTTGCTTCTCCCCGACCGCCAAAGCTCACTCT GTGGGCAACGTATGTAGGCATTTCTTACAATTTCATCCATGCGCATATGA TTTGGGTTCTAATTTTCGAACTCCTACTGTAGTTGGTGCCAGGGCGGGGT CGCTAGTTCTCTGCCACTTTGCCGTGACTTGCCGTTCTCGACCTCCACCC CCCACCATCGCAGCACCATTCACGGGAAAAGCAGGGAAGAGCAGGAATCT TGGCGCGGCAAAGCAAAACCAACAGCAGCAGGAGCAGCAGCAACAGCGGC GGCGTCAGCGGCCGCCAAAACCGCTATGGCAGCGATTTCTTCCTCTTATC GTCAGCAGTGCTGTCTTGTTTTGCCTCTTTTTCTACTTCGCGGCTGAACG GCCCAACGATGACAGTGTGCATTTCGCGCTGATGTGTTTTATCGGTGGAG TTGTTGCGGTCGAAGCCACCGAAAGCGCAATCAAAATGTTTGGAGGCGTG CACCCGGCGGCGATTGCGGCTGTCTCTCACTTCAGGGCAAACGCTTCCGG GTGAGTTTGAGTTGTCTCTTAGGCTTCCAGTCACCTCGCCCCCGCAGCTG CTCGAAGGTCTGGGTGCCTGAAAAAAGCCACGAGTAAGAAAGAGATGGAC TCTGCTTCTGGGACAGGAGTTCACTTTGAGTTTCAAGTTTAAGCTAATTC CGGCTTTGCACTGATCCAAACGGTGTTGCACACAAAGCTGTATTTAGAAA GTTTGGTGGCTTCGACCGCAAACAGCCCATTGGTCTAAGTTTGACGGACC CGCCTCTCTCGGCTTTCCTCTCGCAGGTATATGGCATCCTTCGTAATAGT GGTCGTCTTGCAGGGTGTGTGGGATGGAACACGGGACAACGGAAAGGACC CGCATGATCCGTACCGCCCGGCACTCTCCTGCCTCGCCGTGCTTTCGATC GGTATCCTGCTTCACCTCGTAGCACCGAGTCTCGGCGGGTTTCTCCTCCG CCAACTGGACGACGTGCGATTGGCCCGTCTGCTCCCCAGCGGTGACCGCC GCTGTGCTCGCTGGGGATGGAAAACGGCCAAAGAGTGTTTCGCCACCTCC GTCGTCTTCGGGCTCTGCATAACGGCCGCGGCGCTTTCAGGTGGGTGGGT GAAGCTCGTATCTCTACTACAATAGGGCTGAACGCTTGCGTTTTTTTGTG ATACCCATGTCCTAGATAGCTGCTTCGGAGCTATGCAGAACGCACTTTGT TGCCGTTGTTTGCGTACAGCTCAAGCTACCGAGAAGTGTTTGCTTTAACA TATGGTACGACCTTAAAACGAACTGAACGGTGTCGTCGTTGCTCCTCCCG GCGCTATGTATGCATATGTCGCATGTATTTCCCCCGTCACGCTTCCAGGT GGTGGACCGTTGCTCTTGGGGCTTGGTATGACCCACAGCGTGGTTTCCGC TAGCCGAGAAGCTCTACCGGTGATTCGAAAAGGATGGCTGAAGCGAAAGA TGAGCCGGAGAAAGTCCACCATGGCTGCGCCCTCCTCTACTCACGAATTT TCCCTGCAAGGTGTGATCACGTTGATCAGGTCGGGCCCGACGCAGGTTGT TTGCTCCCCCGTCATACTGCCCACGTTCGTGCTCTGGATGACGCACAGCA CGATTTGCTCGTGGCCGAAGGAGTGCACGGACCGGCTGGTGTTTCTGCTT AAGGTGTCGGCGACGACCGTCTGCACCACGCACCTCATGCAACCATCTTT GCCGAAGGCTGGCGCGCCGGCCCAGGGCAACGCAGATGATAGTAGTGGTT CTACCGCGTGGGTCAACAAGGCTTTCGTGTGCGTGTGTTCTTCGGCCGCG TGGACGCTCCTCCTGTTGTGCTGCCTCATCGTCCTTGGCCACCAAGAAAG CTCGGAAGGGATCCTGGCGATGGTACTCGTGGTCACCATCGTAGCCCTGC GAACCCGTCACGAGAGGACCTGGCGCGGCTTGATGCTGGTGTTTTGGGTG GCTCTGCTGGCCATCCTGGTCAACGCCGCCTGTTCGAAGCTGATGCAGCA GAACAAGGTTTTCCGCCGAGTGTTTTCTGACGATGTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig515:16678..20514-

>mRNA_L-elsbetiae_contig515.13224.1 ID=mRNA_L-elsbetiae_contig515.13224.1|Name=mRNA_L-elsbetiae_contig515.13224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2772bp|location=Sequence derived from alignment at L-elsbetiae_contig515:16678..20514- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGCATCCACCCTCGTGGAGCGGACCAACGGGAAACTACCAAATGG
TGGCATCCACCCTCGTGGAGCGGACCAACGGGAAACTACCAACACCATTC
ACGGGAAAAGCAGGGAAGAGCAGGAATCTTGGCGCGGCAAAGCAAAACCA
ACAGCAGCAGGAGCAGCAGCAACAGCGGCGGCGTCAGCGGCCGCCAAAAC
CGCTATGGCAGCGATTTCTTCCTCTTATCGTCAGCAGTGCTGTCTTGTTT
TGCCTCTTTTTCTACTTCGCGGCTGAACGGCCCAACGATGACAGTGTGCA
TTTCGCGCTGATGTGTTTTATCGGTGGAGTTGTTGCGGTCGAAGCCACCG
AAAGCGCAATCAAAATGTTTGGAGGCGTGCACCCGGCGGCGATTGCGGCT
GTCTCTCACTTCAGGGCAAACGCTTCCGGCACCATTCACGGGAAAAGCAG
GGAAGAGCAGGAATCTTGGCGCGGCAAAGCAAAACCAACAGCAGCAGGAG
CAGCAGCAACAGCGGCGGCGTCAGCGGCCGCCAAAACCGCTATGGCAGCG
ATTTCTTCCTCTTATCGTCAGCAGTGCTGTCTTGTTTTGCCTCTTTTTCT
ACTTCGCGGCTGAACGGCCCAACGATGACAGTGTGCATTTCGCGCTGATG
TGTTTTATCGGTGGAGTTGTTGCGGTCGAAGCCACCGAAAGCGCAATCAA
AATGTTTGGAGGCGTGCACCCGGCGGCGATTGCGGCTGTCTCTCACTTCA
GGGCAAACGCTTCCGGGTATATGGCATCCTTCGTAATAGTGGTCGTCTTG
CAGGGTGTGTGGGATGGAACACGGGACAACGGAAAGGACCCGCATGATCC
GTACCGCCCGGCACTCTCCTGCCTCGCCGTGCTTTCGATCGGTATCCTGC
TTCACCTCGTAGCACCGAGTCTCGGCGGGTTTCTCCTCCGCCAACTGGAC
GACGTGCGATTGGCCCGTCTGCTCCCCAGCGGTGACCGCCGCTGTGCTCG
CTGGGGATGGAAAACGGCCAAAGAGTGTTTCGCCACCTCCGTCGTCTTCG
GGCTCTGCATAACGGCCGCGGCGCTTTCAGGTATATGGCATCCTTCGTAA
TAGTGGTCGTCTTGCAGGGTGTGTGGGATGGAACACGGGACAACGGAAAG
GACCCGCATGATCCGTACCGCCCGGCACTCTCCTGCCTCGCCGTGCTTTC
GATCGGTATCCTGCTTCACCTCGTAGCACCGAGTCTCGGCGGGTTTCTCC
TCCGCCAACTGGACGACGTGCGATTGGCCCGTCTGCTCCCCAGCGGTGAC
CGCCGCTGTGCTCGCTGGGGATGGAAAACGGCCAAAGAGTGTTTCGCCAC
CTCCGTCGTCTTCGGGCTCTGCATAACGGCCGCGGCGCTTTCAGGTGGTG
GACCGTTGCTCTTGGGGCTTGGTATGACCCACAGCGTGGTTTCCGCTAGC
CGAGAAGCTCTACCGGTGATTCGAAAAGGATGGCTGAAGCGAAAGATGAG
CCGGAGAAAGTCCACCATGGCTGCGCCCTCCTCTACTCACGAATTTTCCC
TGCAAGGTGTGATCACGTTGATCAGGTCGGGCCCGACGCAGGTTGTTTGC
TCCCCCGTCATACTGCCCACGTTCGTGCTCTGGATGACGCACAGCACGAT
TTGCTCGTGGCCGAAGGAGTGCACGGACCGGCTGGTGTTTCTGCTTAAGG
TGTCGGCGACGACCGTCTGCACCACGCACCTCATGCAACCATCTTTGCCG
AAGGCTGGCGCGCCGGCCCAGGGCAACGCAGATGATAGTAGTGGTTCTAC
CGCGTGGGTCAACAAGGCTTTCGTGTGCGTGTGTTCTTCGGCCGCGTGGA
CGCTCCTCCTGTTGTGCTGCCTCATCGTCCTTGGCCACCAAGAAAGCTCG
GAAGGGATCCTGGCGATGGTACTCGTGGTCACCATCGTAGCCCTGCGAAC
CCGTCACGAGAGGACCTGGCGCGGCTTGATGCTGGTGTTTTGGGTGGCTC
TGCTGGCCATCCTGGTCAACGCCGCCTGTTCGAAGCTGATGCAGCAGAAC
AAGGTTTTCCGCCGAGTGTTTTCTGACGATGTCGTGGTGGACCGTTGCTC
TTGGGGCTTGGTATGACCCACAGCGTGGTTTCCGCTAGCCGAGAAGCTCT
ACCGGTGATTCGAAAAGGATGGCTGAAGCGAAAGATGAGCCGGAGAAAGT
CCACCATGGCTGCGCCCTCCTCTACTCACGAATTTTCCCTGCAAGGTGTG
ATCACGTTGATCAGGTCGGGCCCGACGCAGGTTGTTTGCTCCCCCGTCAT
ACTGCCCACGTTCGTGCTCTGGATGACGCACAGCACGATTTGCTCGTGGC
CGAAGGAGTGCACGGACCGGCTGGTGTTTCTGCTTAAGGTGTCGGCGACG
ACCGTCTGCACCACGCACCTCATGCAACCATCTTTGCCGAAGGCTGGCGC
GCCGGCCCAGGGCAACGCAGATGATAGTAGTGGTTCTACCGCGTGGGTCA
ACAAGGCTTTCGTGTGCGTGTGTTCTTCGGCCGCGTGGACGCTCCTCCTG
TTGTGCTGCCTCATCGTCCTTGGCCACCAAGAAAGCTCGGAAGGGATCCT
GGCGATGGTACTCGTGGTCACCATCGTAGCCCTGCGAACCCGTCACGAGA
GGACCTGGCGCGGCTTGATGCTGGTGTTTTGGGTGGCTCTGCTGGCCATC
CTGGTCAACGCCGCCTGTTCGAAGCTGATGCAGCAGAACAAGGTTTTCCG
CCGAGTGTTTTCTGACGATGTC
back to top