mRNA_L-elsbetiae_contig5133.13201.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5133.13201.1
Unique NamemRNA_L-elsbetiae_contig5133.13201.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.760e-38
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:  106 SSKRRLPLSLQPLAGRCWFEDCGKISTFRCRRCRVGYYCSRDHQRAHWARHRRSCEEGRGEPPPPLARLALPPQRQKSVGWADST 360
            SSKR+LPL LQPLAGRC FE CG+IS FRCRRCR  +YC+RDHQR+ WA HRR C+EG+GEPPPPLARL LP QRQK+VGWADST
Sbjct:  232 SSKRQLPLPLQPLAGRCNFEGCGQISVFRCRRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADST 316
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BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: D7G1S8_ECTSI (Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S8_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 8.180e-26
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:  178 ISTFRCRRCRVGYYCSRDHQRAHWARHRRSCEEGRGEPPPPLARLALPPQRQKSVGWADST---PRSM-DAADPSGGW 399
            IS FRC RCR  +YC+RDHQR+ WA HRR C+EG+GEPPPPLARL LP Q+QK+VGWADST   P S   AAD  GG+
Sbjct:   30 ISLFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQKQKAVGWADSTRVVPASAASAADRGGGF 107
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BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: A0A7S2WAM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WAM1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.360e-7
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:  139 PLAGRCWFEDCGKISTFRCRRCRVGYYCSRDHQRAHWARHRRSCEEGRGEPPPPLARLALPPQRQKSVGWADST 360
            P +G C    CGK + +RC RC + +YCSRDHQRAHW  H ++C         PL+ L+   QR   V  A +T
Sbjct:  223 PTSGAC--SMCGKTTIYRCARCGIQFYCSRDHQRAHWPEHSKTCRALEA----PLSPLSRHAQRVVPVDAASAT 290
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BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: A0A7S2CTK3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTK3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.040e-7
Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:  127 LSLQPLAGRCWFEDCGKISTFRCRRCRVGYYCSRDHQRAHWARHRRSCEEGRGEPPPPLARLALPPQRQKSV 342
            L L+P A  C    C K S +RC +C   +YCSR+HQRAHW  H+  C+        P     LPP++ KS 
Sbjct:  248 LDLKPFAAPC--AVCSKQSPYRCNQCHAKFYCSREHQRAHWPEHQYECKPC----DKPFVWKPLPPKQDKST 313
[Close]
BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: A0A5A9PAY9_9TELE (Egl nine-like protein 1 n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PAY9_9TELE)

HSP 1 Score: 56.6 bits (135), Expect = 9.120e-7
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  118 RLPLSLQPLAGRCWFEDCGKISTF-RCRRCRVGYYCSRDHQRAHWARHRRSCEE 276
            R  L+L P   R + E CGK+    +C RCR+ +YCS++HQ+ HW  H+R+C +
Sbjct:    3 RCALALDPERERQYCELCGKMENLLKCGRCRISFYCSKEHQKQHWKEHKRTCAQ 56
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BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: A0A6J2V507_CHACN (egl nine homolog 1-like isoform X1 n=7 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2V507_CHACN)

HSP 1 Score: 56.2 bits (134), Expect = 1.330e-6
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 1 
Query:  151 RCWFEDCGKISTF-RCRRCRVGYYCSRDHQRAHWARHRRSCEEGRGEPPPPLARLALPPQRQKSVGWADSTPRS 369
            R + E CGK+    +C RCR  +YCS++HQ+  W +H+R C+E      PP +   L PQ  K  G    T R+
Sbjct:   18 RQYCELCGKMENLLKCGRCRNSFYCSKEHQKQDWKKHKRVCKEAEKAQSPPQSDPPLSPQNDKKAGQQGPTQRN 91
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BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: UPI0019556611 (egl nine homolog 1 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019556611)

HSP 1 Score: 55.8 bits (133), Expect = 1.700e-6
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:  118 RLPLSLQPLAGRCWFEDCGKISTF-RCRRCRVGYYCSRDHQRAHWARHRRSCEE 276
            R P  L P   + + E CGK+    +C RCR+ +YCS++HQ+ HW +H+ +C+E
Sbjct:    3 RCPTVLDPDTDKQYCELCGKMENLLKCGRCRISFYCSKEHQKQHWKKHKLTCKE 56
[Close]
BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: UPI0015B16153 (prolyl hydroxylase EGLN3-like n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015B16153)

HSP 1 Score: 55.8 bits (133), Expect = 1.820e-6
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:  112 KRRLPLSLQPLAGRCWFEDCGKISTF-RCRRCRVGYYCSRDHQRAHWARHRRSCEEG-------RGEPPPPLARLALPPQRQ---KSVGWADSTPRSMDAAD 384
            +RRL  S+     R + E CGK+    +C RCR  +YCS++HQ+  W +H++ C+E        + EPP   +R   P QRQ   K+    DST  S  AAD
Sbjct:    4 ERRLENSVDLERDRQYCELCGKMENLLKCGRCRNSFYCSKEHQKQDWKKHKQICKEADKSQSAPQPEPPQQASRDGKPGQRQLLQKNGAEQDST-ASQSAAD 104
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BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: A0A553QRH9_9TELE (Uncharacterized protein n=2 Tax=Danionella translucida TaxID=623744 RepID=A0A553QRH9_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 4.270e-6
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:  118 RLPLSLQPLAGRCWFEDCGKISTF-RCRRCRVGYYCSRDHQRAHWARHRRSCEEGRGE---PPPPLARLALPPQRQKSVGWADSTPRS 369
            R   +L P +     E CGK+    +C RC++ +YCS++HQ+ HW +H+ +C E       P  P AR AL  ++Q S    +S P+S
Sbjct:    3 RRAAALDPDSDTQVCELCGKMENLLKCGRCQISFYCSKEHQKQHWKKHKPACREAEKSKIVPQNPSARTALITRKQNS----ESAPKS 86
[Close]
BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Match: E7F518_DANRE (Egl-9 family hypoxia-inducible factor 1a n=4 Tax=Danio rerio TaxID=7955 RepID=E7F518_DANRE)

HSP 1 Score: 54.3 bits (129), Expect = 5.880e-6
Identity = 21/54 (38.89%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:  118 RLPLSLQPLAGRCWFEDCGKISTF-RCRRCRVGYYCSRDHQRAHWARHRRSCEE 276
            + P  L P   + + E CGK+    +C RCR+ +YCS++HQ+ HW +H+ +C E
Sbjct:    3 KCPTVLDPDGDKQYCELCGKMENLLKCGRCRISFYCSKEHQKEHWKKHKLTCRE 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5133.13201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE4.760e-3877.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S8_ECTSI8.180e-2666.67Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ec... [more]
A0A7S2WAM1_9STRA2.360e-741.89Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2CTK3_9STRA8.040e-740.28Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5A9PAY9_9TELE9.120e-742.59Egl nine-like protein 1 n=1 Tax=Triplophysa tibeta... [more]
A0A6J2V507_CHACN1.330e-637.84egl nine homolog 1-like isoform X1 n=7 Tax=Chanos ... [more]
UPI00195566111.700e-640.74egl nine homolog 1 n=1 Tax=Pimephales promelas Tax... [more]
UPI0015B161531.820e-637.25prolyl hydroxylase EGLN3-like n=1 Tax=Anguilla ang... [more]
A0A553QRH9_9TELE4.270e-635.23Uncharacterized protein n=2 Tax=Danionella translu... [more]
E7F518_DANRE5.880e-638.89Egl-9 family hypoxia-inducible factor 1a n=4 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5133contigL-elsbetiae_contig5133:2575..3980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, MYND-type
Ec32 orthologEc-07_004300.1
Exons2
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816524.6631813-CDS-L-elsbetiae_contig5133:2574..27511622816524.6631813-CDS-L-elsbetiae_contig5133:2574..2751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5133 2575..2751 +
1691683622.3213573-CDS-L-elsbetiae_contig5133:2574..27511691683622.3213573-CDS-L-elsbetiae_contig5133:2574..2751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5133 2575..2751 +
1622816524.6774127-CDS-L-elsbetiae_contig5133:3757..39791622816524.6774127-CDS-L-elsbetiae_contig5133:3757..3979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5133 3758..3979 +
1691683622.3359585-CDS-L-elsbetiae_contig5133:3757..39791691683622.3359585-CDS-L-elsbetiae_contig5133:3757..3979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5133 3758..3979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5133.13201.1prot_L-elsbetiae_contig5133.13201.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5133 2575..3979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5133.13201.1

>prot_L-elsbetiae_contig5133.13201.1 ID=prot_L-elsbetiae_contig5133.13201.1|Name=mRNA_L-elsbetiae_contig5133.13201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
GSTVAGVTGAGASGAGDGALDEESQNTGGKAGTGGSSKRRLPLSLQPLAG
RCWFEDCGKISTFRCRRCRVGYYCSRDHQRAHWARHRRSCEEGRGEPPPP
LARLALPPQRQKSVGWADSTPRSMDAADPSGGW
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mRNA from alignment at L-elsbetiae_contig5133:2575..3980+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5133.13201.1 ID=mRNA_L-elsbetiae_contig5133.13201.1|Name=mRNA_L-elsbetiae_contig5133.13201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1406bp|location=Sequence derived from alignment at L-elsbetiae_contig5133:2575..3980+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGACGGTTGCGGGTGTGACTGGGGCGGGCGCAAGCGGCGCTGGGGA
CGGGGCCCTGGACGAGGAGTCCCAGAACACCGGCGGAAAAGCGGGGACAG
GCGGCAGCAGCAAGAGACGGTTGCCTCTCTCGCTCCAGCCGCTGGCCGGA
AGGTGCTGGTTCGAGGACTGCGGCAAGGTAAAACCGATGCGCGATGTAAA
CATGTAGGCTGCGCTGGTTTCCAGGAGGGTGGATAGTCCGCCCCCTCAGT
GTGAACAGCAGAGGGGCCGACGCGCACCCAACAAACAGCCGCCCAGGATG
GCGGTGGGCGAGACGATGGTGCAAAAATTTTGTCTTTCAAGTTTTTGGGC
GCGCTCGAGTTCGAAAATTGCAGGGCGCGATGCGATCGGTGGATTAAAGG
AAGCTATGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTGCGGTTTT
GTTAGTCGGAAAAGGGGGCCCTGGCGTTGTTGGTTCCGGGGGGGTGGTTG
CCCGGGGTGCGGTAGGNNNNNNNCCAGGGGGGGGGGGAGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGCTGCTGCAGTTTTGTTAGTCTGAAAAGTGCGT
CCTGTCGTTGTCTGTTCCGTGGTGGTGGTTTCGCGGGCTGCAGTAGGACA
GTTGGATCCCGGATATTGCAGGTGCATATGGTAGGCCTACGAACGGCCAC
CGCAGAGCGACAGCAGTGCGTCTGGAGAGCTTGAGAGCGTGCGCAGGCAG
ACTACGGAAACATCCAATACCGCCTCAGATACCGATGTTAGGGGGAGGGA
GGGAGGACCAACCGACCTCTTCTTCCTCGCACGCGGCTGTTTTCGCTCGA
CTTTGGCACGGCGTGCGAGAAAGAAAATCTGAAACGGCCCAAAACAGTTG
GAATAACAACCAATAAGTAAGCAAGCTACGGCAGGCTAATGTACCGACAG
AAACCTTATTCAGNNNNNNNNNNCCCCCCCCTTCTTCCCCCCCCGCGGCT
TTTTTCGCCCCACTTTGGCACGGCGGGCGAAAAAAAAAATCTGAAACACC
CCCCCCCCCCCCCCCCCCCGGGCGTATTTAATTAACATGTGTTTGCACGT
ACGTATCTATGTACGACCTTTTCTCCTCTTCAGATATCGACCTTTCGGTG
CCGGCGGTGTAGAGTGGGATACTACTGCAGCAGAGACCACCAGCGGGCTC
ACTGGGCGCGGCACCGGCGGTCTTGCGAGGAGGGCAGGGGCGAGCCCCCC
CCACCGCTCGCGCGACTCGCCCTGCCGCCGCAGCGGCAGAAGTCGGTGGG
CTGGGCCGATTCGACCCCGAGATCGATGGACGCGGCGGATCCGTCTGGGG
GCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5133:2575..3980+

>mRNA_L-elsbetiae_contig5133.13201.1 ID=mRNA_L-elsbetiae_contig5133.13201.1|Name=mRNA_L-elsbetiae_contig5133.13201.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig5133:2575..3980+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGACGGTTGCGGGTGTGACTGGGGCGGGCGCAAGCGGCGCTGGGGA
CGGGGCCCTGGACGAGGAGTCCCAGAACACCGGCGGAAAAGCGGGGACAG
GCGGCAGCAGCAAGAGACGGTTGCCTCTCTCGCTCCAGCCGCTGGCCGGA
AGGTGCTGGTTCGAGGACTGCGGCAAGGGATCGACGGTTGCGGGTGTGAC
TGGGGCGGGCGCAAGCGGCGCTGGGGACGGGGCCCTGGACGAGGAGTCCC
AGAACACCGGCGGAAAAGCGGGGACAGGCGGCAGCAGCAAGAGACGGTTG
CCTCTCTCGCTCCAGCCGCTGGCCGGAAGGTGCTGGTTCGAGGACTGCGG
CAAGATATCGACCTTTCGGTGCCGGCGGTGTAGAGTGGGATACTACTGCA
GCAGAGACCACCAGCGGGCTCACTGGGCGCGGCACCGGCGGTCTTGCGAG
GAGGGCAGGGGCGAGCCCCCCCCACCGCTCGCGCGACTCGCCCTGCCGCC
GCAGCGGCAGAAGTCGGTGGGCTGGGCCGATTCGACCCCGAGATCGATGG
ACGCGGCGGATCCGTCTGGGGGCTGGATATCGACCTTTCGGTGCCGGCGG
TGTAGAGTGGGATACTACTGCAGCAGAGACCACCAGCGGGCTCACTGGGC
GCGGCACCGGCGGTCTTGCGAGGAGGGCAGGGGCGAGCCCCCCCCACCGC
TCGCGCGACTCGCCCTGCCGCCGCAGCGGCAGAAGTCGGTGGGCTGGGCC
GATTCGACCCCGAGATCGATGGACGCGGCGGATCCGTCTGGGGGCTGG
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