mRNA_L-elsbetiae_contig10091.132.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10091.132.1
Unique NamemRNA_L-elsbetiae_contig10091.132.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.420e-14
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR 117
            MSSSV+EPLDLIRLSL+ERIYVKCRGERELRGKLH   R
Sbjct:    1 MSSSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDR 39
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.020e-14
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLH 105
            MSSSVEEPLDLIRLSLDERI+VKCRGERELRGKLH
Sbjct:    1 MSSSVEEPLDLIRLSLDERIHVKCRGERELRGKLH 35
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.000e-13
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 108
            ++ SVEEPLDLIRLSLDERIYVKCRG+RELRGKLH 
Sbjct:   17 VTMSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHA 52
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.370e-13
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:   10 SVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 108
            SVEEPLDLIRLSLDERIYVKCRG+RELRGKLH 
Sbjct:   13 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHA 45
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A836CGM1_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGM1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-12
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 108
            MS+SVEEPLDLIRLSLDER+YVKCRG+RELRGKLH 
Sbjct:    1 MSTSVEEPLDLIRLSLDERVYVKCRGDRELRGKLHA 36
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A433PXC3_9FUNG (U6 snRNA-associated Sm-like protein LSm3-like protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PXC3_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 2.570e-12
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    4 SSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR 117
            +S+VEEPLDL+RLSLDERIYVK RG+RELRGKLHV  R
Sbjct:   15 TSAVEEPLDLVRLSLDERIYVKLRGDRELRGKLHVGVR 52
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A7J7PUD3_9CHLO (Sm domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PUD3_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 9.540e-12
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    7 SSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 108
            ++V+EPLDLI+LSLDERIYVKCRGERELRG+LH 
Sbjct:    6 ATVKEPLDLIKLSLDERIYVKCRGERELRGRLHA 39
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: L8HA54_ACACA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HA54_ACACA)

HSP 1 Score: 62.8 bits (151), Expect = 9.890e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 108
            + S+VEEPLDLIRLSLD+RIYVK RGERELRGKLH 
Sbjct:   11 LGSTVEEPLDLIRLSLDDRIYVKLRGERELRGKLHA 46
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A453G015_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453G015_AEGTS)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   10 SVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR 117
            +V+EPLDLIRLSLDERIYVK R +RELRGKLHVS+R
Sbjct:    9 AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHVSAR 44
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BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Match: A0A383W7B2_TETOB (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W7B2_TETOB)

HSP 1 Score: 62.0 bits (149), Expect = 1.640e-11
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    7 SSVEEPLDLIRLSLDERIYVKCRGERELRGKLHV 108
            ++V+EPLDLI+LSLDERIYVKCRGERELRG+LH 
Sbjct:    6 ATVKEPLDLIKLSLDERIYVKCRGERELRGRLHA 39
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10091.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D9CUN8_9STRA1.420e-1487.18U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
D7FXS6_ECTSI2.020e-1497.14U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2FJT0_9STRA7.000e-1386.11U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A7S2GP21_9STRA8.370e-1393.94U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A836CGM1_9STRA1.370e-1288.89WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A433PXC3_9FUNG2.570e-1281.58U6 snRNA-associated Sm-like protein LSm3-like prot... [more]
A0A7J7PUD3_9CHLO9.540e-1282.35Sm domain-containing protein n=1 Tax=Scenedesmus s... [more]
L8HA54_ACACA9.890e-1283.33U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=A... [more]
A0A453G015_AEGTS1.060e-1183.33Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A383W7B2_TETOB1.640e-1182.35U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10091contigL-elsbetiae_contig10091:5059..5175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D7FXS6
Preferred nameLSM3
KEGG koko:K12622
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000781,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005694,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030629,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098687,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsKOG3460@1,KOG3460@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons1
Model size117
Cds size117
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815240.992241-CDS-L-elsbetiae_contig10091:5058..51751622815240.992241-CDS-L-elsbetiae_contig10091:5058..5175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10091 5059..5175 +
1691682790.5695462-CDS-L-elsbetiae_contig10091:5058..51751691682790.5695462-CDS-L-elsbetiae_contig10091:5058..5175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10091 5059..5175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10091.132.1prot_L-elsbetiae_contig10091.132.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10091 5059..5175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10091.132.1

>prot_L-elsbetiae_contig10091.132.1 ID=prot_L-elsbetiae_contig10091.132.1|Name=mRNA_L-elsbetiae_contig10091.132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=39bp
MSSSVEEPLDLIRLSLDERIYVKCRGERELRGKLHVSSR
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mRNA from alignment at L-elsbetiae_contig10091:5059..5175+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10091.132.1 ID=mRNA_L-elsbetiae_contig10091.132.1|Name=mRNA_L-elsbetiae_contig10091.132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=117bp|location=Sequence derived from alignment at L-elsbetiae_contig10091:5059..5175+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCTTCCGTCGAGGAGCCGCTGGATCTGATCCGATTATCACTGGA
TGAGAGGATCTACGTCAAATGCCGAGGGGAGAGAGAGCTTCGGGGCAAGC
TTCACGTGAGTTCCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10091:5059..5175+

>mRNA_L-elsbetiae_contig10091.132.1 ID=mRNA_L-elsbetiae_contig10091.132.1|Name=mRNA_L-elsbetiae_contig10091.132.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig10091:5059..5175+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCTTCCGTCGAGGAGCCGCTGGATCTGATCCGATTATCACTGGA
TGAGAGGATCTACGTCAAATGCCGAGGGGAGAGAGAGCTTCGGGGCAAGC
TTCACGTGAGTTCCCGCATGTCTTCTTCCGTCGAGGAGCCGCTGGATCTG
ATCCGATTATCACTGGATGAGAGGATCTACGTCAAATGCCGAGGGGAGAG
AGAGCTTCGGGGCAAGCTTCACGTGAGTTCCCGC
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