mRNA_L-elsbetiae_contig5114.13172.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5114.13172.1
Unique NamemRNA_L-elsbetiae_contig5114.13172.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A6H5JRH9_9PHAE (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRH9_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 4.400e-96
Identity = 143/176 (81.25%), Postives = 157/176 (89.20%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            VPSKSE G DIATFAGGCFWGLELAFQRVPGV  TSVGYTQG V+KPTYG VCSGSTGHTEAVQV+YNPS+V+FE LC VFFGRI+PTQVNGQ +D GTQYRTGIYPHTK+Q++VA KVMD ++G YK PIATE + A +YWPAELYHQQYLAKGGR G+ QSAEKGATETIRCYG
Sbjct:  110 VPSKSEAGHDIATFAGGCFWGLELAFQRVPGVVATSVGYTQGAVEKPTYGEVCSGSTGHTEAVQVYYNPSEVSFEELCGVFFGRINPTQVNGQGADRGTQYRTGIYPHTKEQSDVALKVMDELRGNYKQPIATEIEGAKVYWPAELYHQQYLAKGGRNGMPQSAEKGATETIRCYG 285
[Close]
BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A6T5PGW5_HETAK (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PGW5_HETAK)

HSP 1 Score: 252 bits (644), Expect = 9.180e-76
Identity = 119/176 (67.61%), Postives = 136/176 (77.27%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            VP+ S+ G  IATFAGGCFWGLELAFQRVPGV  TSVGYTQG  ++PTY  VCSG+TGHTEAVQV+YNP +V+F  LC+VFF R +PT VNGQ +D+GTQYRTG+Y HT  Q   A  V   +KG+Y  PIATE K A +YWPAE YHQQYL KGGR    QSAEKG T+TIRCYG
Sbjct:  107 VPATSKAGHAIATFAGGCFWGLELAFQRVPGVVETSVGYTQGAQERPTYSGVCSGATGHTEAVQVYYNPEEVSFTQLCNVFFERTNPTTVNGQGNDFGTQYRTGVYTHTDQQMIEAQAVFTELKGKYSKPIATELKPAQVYWPAEKYHQQYLEKGGRFSSPQSAEKGCTDTIRCYG 282
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BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A7S2JVE8_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JVE8_9STRA)

HSP 1 Score: 231 bits (590), Expect = 3.890e-68
Identity = 109/176 (61.93%), Postives = 131/176 (74.43%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            V S+ +     ATFAGGCFWGLELA+QRV GV  T+VGYTQG   KPTY  VCSG+TGHTEA+ V+YNP + ++E+L D FF R+DPT VNGQ +D G QYRTG+Y HT +Q E+A    +  K +YK PIA+E K A ++WPAE YHQQYL KGGR G  QS EKG+TETIRCYG
Sbjct:   83 VNSEKKPNLAAATFAGGCFWGLELAYQRVAGVEYTAVGYTQGPELKPTYNEVCSGATGHTEAICVYYNPEECSYESLLDTFFQRVDPTTVNGQGNDRGPQYRTGVYTHTPEQMEIAKARFEEEKSQYKRPIASELKEAQVFWPAEKYHQQYLEKGGRFGTPQSTEKGSTETIRCYG 258
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BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A835Z6G6_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G6_9STRA)

HSP 1 Score: 232 bits (591), Expect = 4.190e-68
Identity = 110/176 (62.50%), Postives = 132/176 (75.00%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            VP+KSE G DIATFAGGCFWG EL FQRVPGV  T VGYTQG V +P+Y  VCSGSTGHTE  QV+Y+P QV+++ L + FF R+DPTQVNGQ +D GTQYR+G+Y HT +Q   A +V + +      PIATE K A +++PAE YHQQYL+KGGR    QSAEKG T+ IRCYG
Sbjct:   96 VPAKSEEGWDIATFAGGCFWGSELQFQRVPGVISTHVGYTQGKVDQPSYDDVCSGSTGHTEGFQVYYDPKQVSYKTLVEEFFSRVDPTQVNGQGNDRGTQYRSGVYFHTPEQEAAAKEVFERLAKENSRPIATELKAAAVFYPAEPYHQQYLSKGGRFNQPQSAEKGCTDKIRCYG 271
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BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A7S2RMP4_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMP4_9STRA)

HSP 1 Score: 231 bits (590), Expect = 1.450e-67
Identity = 105/176 (59.66%), Postives = 131/176 (74.43%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
             PSKS+ G  I TFAGGCFWGLELA+QRVPGV  T VGYTQG +++PTY  VCS  +GHTEA+Q+ Y+PS VT+  LC++ F RIDPT  +   +D+G QYR GIYPHT ++  VA + ++  + ++  PI TECK+A ++WPAE YHQQYL KGGR G  QSAEKG T TIRCYG
Sbjct:  125 APSKSKDGHSITTFAGGCFWGLELAYQRVPGVVATCVGYTQGHLEQPTYKEVCSAMSGHTEAIQLTYDPSVVTYRELCELLFTRIDPTAKDRVGNDFGPQYRHGIYPHTDEEMAVAQQFIEDNQSKFNRPIVTECKKAVVFWPAEEYHQQYLEKGGRNGSPQSAEKGCTSTIRCYG 300
[Close]
BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A7S2BLV3_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BLV3_9STRA)

HSP 1 Score: 226 bits (576), Expect = 5.880e-66
Identity = 112/178 (62.92%), Postives = 129/178 (72.47%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVA--WKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            VP+KSE G  IATFAGGCFWG+ELA+QRVPGV  T VGYTQG   KPTY  V +GSTGHTEA+QVFY+P  V FEAL  +   RI+PT++N   +D GTQYR+GIY HT +Q   A  W++     GRYK  I TE KRA ++WPAE YHQQYL KGGR G AQSA KG  E IRCYG
Sbjct:   90 VPAKSEDGYAIATFAGGCFWGIELAYQRVPGVIATCVGYTQGETSKPTYKEVSTGSTGHTEALQVFYDPKAVDFEALVLLLQSRINPTEINRSGADVGTQYRSGIYCHTDEQLTKAEKWRMDARASGRYKGEIVTEVKRAGLFWPAEEYHQQYLVKGGRMGRAQSAAKGCEEEIRCYG 267
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BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: K8Z531_NANGC (Peptide-methionine (S)-S-oxide reductase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z531_NANGC)

HSP 1 Score: 220 bits (561), Expect = 1.090e-64
Identity = 105/176 (59.66%), Postives = 126/176 (71.59%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            VP+ S  G  IATFAGGCFWG+ELAFQRVPGV  T  GYTQG V +P+Y  VCSG+TGHTEA+QV + P++V++E L  VF+ RIDP   NGQ  D GTQYRTGIY HT  Q   A +  ++ + +Y  PI TE K A ++WPAE+ HQ YL KGGR G AQSA KG T+ IRCYG
Sbjct:   25 VPALSVDGHSIATFAGGCFWGIELAFQRVPGVVATGTGYTQGHVAEPSYQEVCSGTTGHTEAIQVHFKPNEVSYEDLLKVFWERIDPLMENGQGGDRGTQYRTGIYTHTDAQHRAALQSREIEQKKYSRPIMTEIKPAKVFWPAEVSHQGYLWKGGRFGSAQSAAKGCTDPIRCYG 200
[Close]
BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A1Z5KFI2_FISSO (Peptide-methionine (S)-S-oxide reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFI2_FISSO)

HSP 1 Score: 222 bits (565), Expect = 2.190e-64
Identity = 105/166 (63.25%), Postives = 123/166 (74.10%), Query Frame = 1 
Query:   31 IATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            +ATFAGGCFWGLELA+QRVPGV  T+VGY QG  + PTY  VC+G+TGHTEAV V+Y+P +  +  L D FF RIDPT VNGQ  D+G QYRTGIY HT +Q  +A    +    +YK P+ATE K AT +WPAE YHQQYL KGGR G+ Q A KGATETIRCYG
Sbjct:   99 LATFAGGCFWGLELAYQRVPGVQYTAVGYAQGPEEFPTYNQVCAGATGHTEAVMVYYDPKECDYSKLLDTFFDRIDPTTVNGQGRDFGKQYRTGIYFHTPEQEAIARARFEEEAKKYKKPMATELKAATPFWPAEKYHQQYLEKGGRFGMPQDASKGATETIRCYG 264
[Close]
BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A7S2XVB0_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVB0_9STRA)

HSP 1 Score: 222 bits (566), Expect = 3.490e-64
Identity = 105/178 (58.99%), Postives = 129/178 (72.47%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVK--KPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
             P+ S+ G  IATFAGGCFWG ELAFQR+PGV  T VGYTQG  K  +PTY  +CSG TGH E  QV+Y+PS+V+++ L   FF +I PTQ N Q  D G QYRTG+Y HT++Q + A + ++ +KG Y  PIATE K+ATI+WPAE YHQQYL +GGR G+ QSAEKG    IRCYG
Sbjct:  113 APAVSKEGYSIATFAGGCFWGTELAFQRLPGVVSTMVGYTQGDPKYGQPTYSMICSGRTGHAECCQVYYDPSEVSYKDLLKEFFSKIKPTQKNRQGFDIGNQYRTGVYAHTEEQMKEAEEYVESIKGNYFFPIATELKKATIFWPAERYHQQYLERGGRYGLKQSAEKGNKSPIRCYG 290
[Close]
BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Match: A0A4D9CTX0_9STRA (Peptide-methionine (S)-S-oxide reductase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTX0_9STRA)

HSP 1 Score: 221 bits (564), Expect = 4.460e-64
Identity = 106/176 (60.23%), Postives = 129/176 (73.30%), Query Frame = 1 
Query:    1 VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYGAVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQYRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQYLAKGGRKGIAQSAEKGATETIRCYG 528
            V  KS+ G +IATFAGGCFWGLELA+QRV GV  TSVGYTQG  +KPTY  VCSG +GHTEAVQVF++P +V++E LC +   RI+PT  N   +D GTQYR GIY H + Q +VA KV++  + ++  PI TEC  AT+YWPAE YHQ+YL KGGR    QSA KG T+ IRCYG
Sbjct:  101 VQDKSKDGYEIATFAGGCFWGLELAYQRVVGVIDTSVGYTQGKDEKPTYDYVCSGMSGHTEAVQVFFDPKEVSYEYLCKLLLTRINPTLKNQVGNDRGTQYRHGIYYHNEGQEKVAKKVLEEAQAQFSKPIVTECLPATVYWPAEEYHQKYLEKGGRFSAGQSAAKGCTDPIRCYG 276
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5114.13172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRH9_9PHAE4.400e-9681.25Peptide-methionine (S)-S-oxide reductase n=2 Tax=E... [more]
A0A6T5PGW5_HETAK9.180e-7667.61Peptide-methionine (S)-S-oxide reductase n=1 Tax=H... [more]
A0A7S2JVE8_9STRA3.890e-6861.93Peptide-methionine (S)-S-oxide reductase n=1 Tax=L... [more]
A0A835Z6G6_9STRA4.190e-6862.50Peptide-methionine (S)-S-oxide reductase n=1 Tax=T... [more]
A0A7S2RMP4_9STRA1.450e-6759.66Peptide-methionine (S)-S-oxide reductase n=1 Tax=R... [more]
A0A7S2BLV3_9STRA5.880e-6662.92Peptide-methionine (S)-S-oxide reductase n=1 Tax=F... [more]
K8Z531_NANGC1.090e-6459.66Peptide-methionine (S)-S-oxide reductase n=3 Tax=M... [more]
A0A1Z5KFI2_FISSO2.190e-6463.25Peptide-methionine (S)-S-oxide reductase n=2 Tax=F... [more]
A0A7S2XVB0_9STRA3.490e-6458.99Peptide-methionine (S)-S-oxide reductase n=1 Tax=F... [more]
A0A4D9CTX0_9STRA4.460e-6460.23Peptide-methionine (S)-S-oxide reductase n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5114contigL-elsbetiae_contig5114:1534..8245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue7.8e-78
Seed eggNOG ortholog2880.D7FRP8
Preferred nameMSRA4
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
EggNOG free text desc.peptide-methionine (S)-S-oxide reductase activity
EggNOG OGsCOG0225@1,KOG1635@2759
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Ec32 ortholog descriptionmethionine sulfoxide reductase
Ec32 orthologEc-00_003370.1
Exons5
Model size1872
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5114.13172.1prot_L-elsbetiae_contig5114.13172.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5114 2873..8245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816521.7942183-UTR-L-elsbetiae_contig5114:1533..28721622816521.7942183-UTR-L-elsbetiae_contig5114:1533..2872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5114 1534..2872 -
1691683620.2717783-UTR-L-elsbetiae_contig5114:1533..28721691683620.2717783-UTR-L-elsbetiae_contig5114:1533..2872Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5114 1534..2872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816521.8081896-CDS-L-elsbetiae_contig5114:2872..29681622816521.8081896-CDS-L-elsbetiae_contig5114:2872..2968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 2873..2968 -
1691683620.286467-CDS-L-elsbetiae_contig5114:2872..29681691683620.286467-CDS-L-elsbetiae_contig5114:2872..2968Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 2873..2968 -
1622816521.8186991-CDS-L-elsbetiae_contig5114:4887..49771622816521.8186991-CDS-L-elsbetiae_contig5114:4887..4977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 4888..4977 -
1691683620.2981942-CDS-L-elsbetiae_contig5114:4887..49771691683620.2981942-CDS-L-elsbetiae_contig5114:4887..4977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 4888..4977 -
1622816521.8298078-CDS-L-elsbetiae_contig5114:5564..57171622816521.8298078-CDS-L-elsbetiae_contig5114:5564..5717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 5565..5717 -
1691683620.3093572-CDS-L-elsbetiae_contig5114:5564..57171691683620.3093572-CDS-L-elsbetiae_contig5114:5564..5717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 5565..5717 -
1622816521.840995-CDS-L-elsbetiae_contig5114:7584..77171622816521.840995-CDS-L-elsbetiae_contig5114:7584..7717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 7585..7717 -
1691683620.3181438-CDS-L-elsbetiae_contig5114:7584..77171691683620.3181438-CDS-L-elsbetiae_contig5114:7584..7717Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 7585..7717 -
1622816521.8520935-CDS-L-elsbetiae_contig5114:8186..82451622816521.8520935-CDS-L-elsbetiae_contig5114:8186..8245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 8187..8245 -
1691683620.3294578-CDS-L-elsbetiae_contig5114:8186..82451691683620.3294578-CDS-L-elsbetiae_contig5114:8186..8245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5114 8187..8245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5114.13172.1

>prot_L-elsbetiae_contig5114.13172.1 ID=prot_L-elsbetiae_contig5114.13172.1|Name=mRNA_L-elsbetiae_contig5114.13172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
VPSKSEGGQDIATFAGGCFWGLELAFQRVPGVTGTSVGYTQGWVKKPTYG
AVCSGSTGHTEAVQVFYNPSQVTFEALCDVFFGRIDPTQVNGQRSDWGTQ
YRTGIYPHTKDQAEVAWKVMDLVKGRYKLPIATECKRATIYWPAELYHQQ
YLAKGGRKGIAQSAEKGATETIRCYG*
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mRNA from alignment at L-elsbetiae_contig5114:1534..8245-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5114.13172.1 ID=mRNA_L-elsbetiae_contig5114.13172.1|Name=mRNA_L-elsbetiae_contig5114.13172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6712bp|location=Sequence derived from alignment at L-elsbetiae_contig5114:1534..8245- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCATCGAAGAGCGAAGGGGGGCAAGACATCGCAACGTTCGCCGGCGG
CTGCTTTTGGTGAGCTTATAGGAATTGGTTTTAGGCATGCGATTGAGGCG
TTACGATTAGTTTTATTGATATTTACCCGAACAGCGCCACTCCGTGTGGG
AGATAACGGCCTGGATGGGCTCCGATTATTACTTGTACCACCAAATATAT
ATATCCCTCCCAGTTAGCGCCTGAGGTGAGTACTGCAAATAATATTCAAG
CGATAGTTTGTGGGCTACGTAGGGGTTACTTGCAGTGTTTGTACGCGAAA
TAACAACGAGTGGATCCGTTATTTGGTCGTTTCGCTTGTGGTCAATATTG
TCAACGCGGCCTCGCGCGCGTGCGTGCCCGCACGGAGACAGCAAGAGAGT
CGGTATTCCTCCCTCTCCCGTCTTTTACAGGCAGATTTTTCTAAATCGAC
CCCCCCCGCTTTCTCTTATTTCCACAACCTGGCGAGATCTTGTTTATTTT
TTTACGTGGTTTCGAACTGATCTTTTAGGGGGTTGGAGCTGGCGTTTCAG
CGCGTGCCGGGGGTGACGGGCACGAGCGTCGGGTACACGCAGGGGTGGGT
GAAGAAGCCCACGTACGGGGCGGTGTGCAGCGGCTCCACCGGGCACACGG
AGGCGGTTCAGGTGCGCGGCTAGTCTAGGCTGCAGGCTAGGCTGGGGGCC
CCAAGAGAAGGGAAAGGAGGGGGTGGGGTTAGGGTGGGGTGTACGGTTAT
ATCCCTTGAGAATGCCTCAGGCTGTAAATATTTTTCAAAGCCGATTTGGT
CCACAACCGAGAGGGTGCGATGGACAAGATTGGTAAAAGTTGGGAAGATC
TCGACGAGATTCTTTCAAGAGCACATCGCTCGACAATAGCAACCCGCCCA
TTGCGGAGAAAACCGGCTTTGAGAGTTGTCTGCAACCCGGGGCATTCTCA
AGGAATATTACGGTACACGGGAGAAGCTTATTGAAAATCAGACTCGCACC
TTTTCGCTGTAGCTCTGGAGGAGGGAAGGGGGGATCCCAACATTTTTTCG
CCTTAAAACTGCGCCAGGCAGTGGGGAGCGGGTAACTGGGCGGCGCTGCG
CTGCGCCCCCCGTCCTTTCCACCCCGTCTAGTGAACACCAGCTTTACCGT
GCTTCGTGCGCATCATGTCCTCTCTGTTATGTAGGGTATGCTTCGCACCT
CGCTTTGTTTGTGGTTACCACTGCATCTATCTTGATCATTTGTTTTTTTT
ATTCACTTGTATCTCCAGTGCTTGATGGGCTCCTTGCCACGAGGGCATCT
TGCCAGAGTACTGAACCGTGGTCTCACTGAAGGGTTCCTTTCCCCGAGGT
CCCCACTCTCCCTTTCTGCGGTGCTTGCCTAAATGTATAGACGTAGGGTT
TTTATCGCGAGAAGGGTTCAGCTGTGCCTTTCCCTCGGCGACGGTGAGGT
CGAAGTTTGAGCATACATATCTGCATATTTCGTATATATATAGAAATATA
AGCCCAGATACAGTAGGTAGATCTTCACCCTTGCCTTCATCTATTTTCCA
TCGCCTCTTGGAATGACGATATTCACACGAGCGCAGCAGCTTTTCGGATG
GATCTTGCCAAGTCTGTTTTAGGTTTTTTGCGTGGTTCTTTCTCGATGCG
TTGCCGTTTCGGTGTTATGTTCGGCATTGCATGTTCATGATCAGGCCTTA
CGTTGCCTCCCGTGCAACTCATATTATTATGTTAGTAACCTTCTCCGTCG
CCGGGTGCTTTCAACTGATGCTCATATGGCGGGCCCGTCTGGGTTGGAGA
TGCATCCCGGCCAGGAACAAAAAGTTGATCATCATCGTCTAAATTTGGGA
CCGACTCCGACTAATTATGTTATATATACAACCCATTGTAATCCATAGGC
TTCACCTGCGATAGAGCCCCCCAATTCTCAAGAAGAGCAGTGGGTGCAGC
GCGAGGAGGTATTTATCTAGAAAATAGACCCCACAGCCACTTTTTCAGAA
TCGGGGGCCCTGCTGCTGGGAGCCTATATATAGTACGTCCGATCCATCCA
GTCCTTTCCTTTCTTTCACACTTTCCGTGGTGGTGAGTGCAAGCATTATA
TTTCACTCATTTTCCGACCTTCATGCGACGTCTACCCACCCCCGATACGG
CCGAACTCTTTGTACGGCCTTTCCTCTGCAGTTGTGCAAAAACAATCGCC
AACGTCTCCTGTCCTCTTACTCTCGAACATGTGCGAAGTAATATTCATTT
CACACTGTTGTGACCTTTTGCCGACATTCTGTGCGTGGACTTGTATTATC
TGTACATCCATACGAAAGGACCTCCCATTGTCAAATACCCATAATTCTCC
TCCGTTGGCGGTTTTATTCCACACCCTAGACAACACCATTTATTTCTGGC
CCAGCGCCAGCCCTAGTAAAGTCGACGCGCGAATATATATATGGTACATG
TCTAGGTTCAGATATTGAATGGATCACATATAAAGCCACATGTCGTTGCC
GTCGCCTCCGCCGTTGCCGTTACCTCAGGTTTTCTACAATCCCTCCCAGG
TGACCTTCGAGGCGCTCTGCGATGTCTTCTTCGGCCGCATCGACCCCACC
CAGGTTAACGGGCAAAGGAGCGACTGGGGGACACAGTACAGAACTGGGAT
TTACCCCCATACCAAGGATCAGGCGGAAGTGGTACGTTCCCACTTCCTTT
TTCTTCTTTTTTGTGTTGTTTTTTCGTTTCTCTCTTTGTTGAGTGCCGAG
CCTGAAAACGAAACAGCTGCGAAGGATGTATGGTCTATACCTCATACGCT
TATCAAGCATGCTTTTCGCTTGTTGTCCTCTTTGTTCGTTTATTTTCGGC
CATCGTGAGCTGTGCTTGCGTGCGTGCGATGCGGCATTTTATTATCATCA
CTAGATACATAAATAGCGCGGTAAATTCGTTGGCCATGGAATAAAACCCT
CATAAGAGATGAAGTGAATATTTCAGATTTGTGGCGCGCGCGTGAGTCGG
ACTGTGCGTCAGACCGCCCTCTCTCCCTCCGCTTGTATAGGGTTACAAAC
AATACTCCAAGATAAGATGAGGGAGCTTAATCATCATGCGACCAACTTGT
AAACACAACAGTGAGAGCTAGATGCGAATGGTTGTTTTCCTCCGCTTTTG
GGTTTCCCCCTTTACAAGTGTGCCTTTTCGGCGTTTAATCCGATTGTTTT
CTGTCTTTCGCGATCCATTTTCTGCCTGCTCTGATCCTGCTCGTTTTCAT
TGTTGTTGTCCCCAACAGGCGTGGAAAGTGATGGATTTGGTCAAGGGCCG
CTACAAGCTGCCGATAGCAACGGAGTGCAAGAGGGCCACGATATACTGGC
CGGCAGAGGTGTGAGGTGGCACCGCTCTTGTTTTTTGTTAACATCTTAGA
GCTACCGTAGGTGACACAAGATACCACACCCCCTGGATCGAATTTTAGAG
CTCGATTACTCCGTAACGAAGAAGGTGCCAGCTCCAAACAACACATTTTC
GGACAGCCGTCGACTAGATCTTTCCAACGCCACCCCTTTTCGACACTGTC
ATTCTTCTCGCTGGGGAGAAATCGAGGTTTGAAAATCTGTCCAGGGGGTG
TGGTATCTTGTGTCACCTACGGTAGGGTACTTGTCTAATACGCGCACAAA
TTCGTGTGATATTCTTGACTTGATGATCTATCGGTTCTTACTACTTGTTG
AATGGGACGTGGCTTTTTTCCCGGCGATACCATCCGCAGCGCGCGATTTC
ATTCACGCGAAAAGCAACCTCTCGTTTGCCATTGGAAAGGGAGGAAGCTG
TGTAGAAAAATGCAACGGAAGAGCACAGGACGCTCCTATGATACCCAGGA
CGAGTGTGAGGCACCTCCTACATACCAGATGCTCGATAAGCTGTACGCGC
TGATGTGGTACAAGTAACGGGTTCGGTTTTGCCGAAACCGAACTTGAACC
ACACGGAAGAACATGTACATACACTCAAACGAAAAAAGTAAAGTACAAGC
TCCAGACAAGCGGCACTTAGAAAACATCCAACGGGTTTCCAAACACACTG
GTCGAACAACCGGACCTCCATCTCTGCGAGAAAGGTACAACGTATACCAC
AAGACGATGCGTGCACCTACCAAAGCAACAAGTCAAGATACACGGTCCAG
CATCGCACAACCTGGATTCTCTATAATGATGAACCTGGATTCTCTATAGT
GATGATGGATCTGATGCACACGTATGTTCTGTCTTTCACCGTGAATCCTC
TGTTGATGAGCCGGTCCACGTCTGTCTGTCTACATCCTCCCTGGTGATTC
GGACCCCACCGCCCATTGCAGGCATATTGTATAATGCCTTTGGTCGAAAT
TGTCATGTTTCGAACAGGGGTGTGTATCTATTGGTCGGGGCTCGGATATT
GATACCACCCGCTCTGTTCCCGTCATTAAAGTACGGAGAATTTGTACACG
GGTAGGTTAATTCACTGCGCACCTTTTTTGCCCAGGCCTCTTTTAGTTCT
CAAGCGACGTACATAGCATCACACACCATAATTTTTGAACTCTTGCATCT
CAACTAGAACGTGCTCGCGGCGCCGCAGTCTAAAGCATGTTAAATAGCTG
TCGGCCCCAAGACAGAGTTTGCTCCAGGGGGTGCCGAAAACCCTGCTTCG
GCAAGGAGTTTATTTTTTATTTTTATCAGCTGTTTTTTTTTATTTATTTA
TTTATATCTTCACATCATCCTTGCCAGCACTACTACTGTATGTAGAGGCT
CCTTGCCACACCACGAAGGATATTTTGCCATAGGGCTGACCCGTGGTCGC
ACAGAAGAGTTGCCCTCCTCGAGGCCCCCACACACCCCTTCTTCGGCGGT
GCTTGCCTAGGATTTTTATCGCGAGACGGGTTAAGCCATCCCGTTCCCTC
GTCGACGGTGAGGTCGAAGTATGATGTACAATATTATAAATAGCTCGACG
GTGGGCTTCATACGTCCTGAGCGGTGGGACTTATTTGACGAATTCGCGAA
ACAGCGCGTGACTTAGGAGTCTGGACCCCAAATGACGTTTGACGTGTCTT
CGATCGGGCGCAAACCGCAGCCAGCCGTGGTTGATCCCCGTCGCATCTTC
GTATGTTTTGCCAGGTGGCAGCAACGCGTTACTCGCTCTGCCACTCTCCC
GCCTTGTTGATATTTTCCCCGTTGTGTCATCCCTCGCGGGTGGCATGGAA
CGGGTGTCGTATGCTGCAGACCTTTTTGACTCTGTCCCTCGGTGCCTGCC
TGCACGCTTGACTTTTTACGCCCTCAGCTGTACCACCAGCAGTACCTTGC
CAAGGGTGGACGCAAGGGAATAGCCCAGAGCGCGGAGAAGGGAGCCACCG
AAACCATCCGCTGCTACGGATAGGGTTAAGGCTTGAGGCTGAAAGGCTTT
TAGTAGCACGCCGCAAAGAGTGCAACAAAAGACCGCATACGGCGGCGGAA
GGAAGGTGGAAAGAAGTGCTGCCTTTGGGGTACGAAAAACGGAGGGGTTT
GTTTTTTCGTGCAAGGCATGTGCGCTGCCACGACGAGCTTGCTGCGCTTG
TTCCCGGGCTTGCTCAGGTGTGTGGGTGCGCGCTTCGACAATAAGTAGCA
GTGGGTGCCCGCAGCCTTCACCTCCCCCCCCAATCATTTTACGTTTCCGA
GGTTCCGCACAGAACGCGTGGAGAGTCAGCTGTTTTTCGAGGCGGTTGAG
AGATCGGGCCCGACAAACGTCGCGAAGTGTGGATGCCTTTTCTCCTTGGT
TTTGGAACCGTCGGGAAAGGGAAGTAGCTTTTCTACGAGCAACGCCTGAC
ACAAGCCATGTATAAAGAATCGAACGTCGAGAGCATGTGCTCGTTCTTGT
TGAAGCTGTTTTGCACCATACATTGTGCCAGTCATAATTTTGCGTTGGCA
CGTGGGCGCCGTCTTTTCGTTTCAAACTGGGCTTGTTCACTGCACACACG
GTTTCGGGTAGGTTTTCCACTAACTAGGCGTGTTTGCGGGTGCGGCAATA
AACCTATACCCACGTTTGTTTTCACTTAAACCGTTGATGTGGCACTGTGG
TCGGACTTTTGTGCTTCCATGTGATTCACGGTGGTGGGGATAGAGGAGAG
AGGCGAGGGATGTTCATGAGCTACGCTTATTGGAGTACGCAACCAGCTTT
AGATTCTAGGCGAGACAGGAAAGAGAGAGCTGTTAGAGGGAGGGACTTCC
TTGTGACGACACCTAAATAGTGCTCCGCTCACAAGCTACTTGTATTTCAA
CCGATTTTGTAAATAAAGCACTAGGTCGTGTTCGTACGAAAATGGCAGTA
CAGCCTGCTCTGGGTCGTTTAGGTCATCCATTCAGAGAAGGCGGTGGCTA
AAGAACCAGAAGTTACCGATATATATAAATGTAGGCACGTCTTTGTAAAA
TGTGTAGTTGAGGGAGAGGAGGGGTGTGGGTGTTGTTGTTAATCGTGAAC
ATGCCCTGATTTCCAGTCGAAAGAATCTTGGTAAAGATGGGACTTCATCG
TATGTAGGCGAGAGAGAGAGACATAGTTCTGAAGTAGACATACATTACTA
TGCACTGCTGTTGATGTCGAATGAGGACATTTGGTATCTTGAGTGTTGAA
GCTGTCACTCGCAGCACGTTTCTGTTGGTGACACGGCGTGCTTCTGCAAC
TGCATCGCGTGTTTTGGGGAATCGCCCTTCGCGCTCTGGCACGAGTCTTG
CAAAACACCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5114:1534..8245-

>mRNA_L-elsbetiae_contig5114.13172.1 ID=mRNA_L-elsbetiae_contig5114.13172.1|Name=mRNA_L-elsbetiae_contig5114.13172.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig5114:1534..8245- (Laminarionema elsbetiae ELsaHSoW15)
GTGCCATCGAAGAGCGAAGGGGGGCAAGACATCGCAACGTTCGCCGGCGG
CTGCTTTTGGTGCCATCGAAGAGCGAAGGGGGGCAAGACATCGCAACGTT
CGCCGGCGGCTGCTTTTGGGGGTTGGAGCTGGCGTTTCAGCGCGTGCCGG
GGGTGACGGGCACGAGCGTCGGGTACACGCAGGGGTGGGTGAAGAAGCCC
ACGTACGGGGCGGTGTGCAGCGGCTCCACCGGGCACACGGAGGCGGTTCA
GGGGGTTGGAGCTGGCGTTTCAGCGCGTGCCGGGGGTGACGGGCACGAGC
GTCGGGTACACGCAGGGGTGGGTGAAGAAGCCCACGTACGGGGCGGTGTG
CAGCGGCTCCACCGGGCACACGGAGGCGGTTCAGGTTTTCTACAATCCCT
CCCAGGTGACCTTCGAGGCGCTCTGCGATGTCTTCTTCGGCCGCATCGAC
CCCACCCAGGTTAACGGGCAAAGGAGCGACTGGGGGACACAGTACAGAAC
TGGGATTTACCCCCATACCAAGGATCAGGCGGAAGTGGTTTTCTACAATC
CCTCCCAGGTGACCTTCGAGGCGCTCTGCGATGTCTTCTTCGGCCGCATC
GACCCCACCCAGGTTAACGGGCAAAGGAGCGACTGGGGGACACAGTACAG
AACTGGGATTTACCCCCATACCAAGGATCAGGCGGAAGTGGCGTGGAAAG
TGATGGATTTGGTCAAGGGCCGCTACAAGCTGCCGATAGCAACGGAGTGC
AAGAGGGCCACGATATACTGGCCGGCAGAGGCGTGGAAAGTGATGGATTT
GGTCAAGGGCCGCTACAAGCTGCCGATAGCAACGGAGTGCAAGAGGGCCA
CGATATACTGGCCGGCAGAGCTGTACCACCAGCAGTACCTTGCCAAGGGT
GGACGCAAGGGAATAGCCCAGAGCGCGGAGAAGGGAGCCACCGAAACCAT
CCGCTGCTACGGATAGCTGTACCACCAGCAGTACCTTGCCAAGGGTGGAC
GCAAGGGAATAGCCCAGAGCGCGGAGAAGGGAGCCACCGAAACCATCCGC
TGCTACGGATAG
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