mRNA_L-elsbetiae_contig5097.13136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5097.13136.1
Unique NamemRNA_L-elsbetiae_contig5097.13136.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5097.13136.1 vs. uniprot
Match: D8LT27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT27_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.160e-11
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 2 
Query:   47 APALSPELGKAEARQASNLRVTTKAIDALHARIAKAKLALD 169
            APALSPEL KAEARQASNLRVTTKAIDALHAR+A+AK  LD
Sbjct:    9 APALSPELNKAEARQASNLRVTTKAIDALHARVARAKRELD 49
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BLAST of mRNA_L-elsbetiae_contig5097.13136.1 vs. uniprot
Match: A0A6H5K8M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.270e-9
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2 
Query:   47 APALSPELGKAEARQASNLRVTTKAIDALHARIAKAKLALD 169
            APAL PEL KAEARQASNLRVTTKAIDALHAR+A+AK  LD
Sbjct:    9 APALGPELNKAEARQASNLRVTTKAIDALHARVARAKRELD 49
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5097.13136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT27_ECTSI5.160e-1187.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8M5_9PHAE1.270e-985.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5097contigL-elsbetiae_contig5097:9804..10245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.2277381-UTR-L-elsbetiae_contig5097:9803..98041622816518.2277381-UTR-L-elsbetiae_contig5097:9803..9804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5097 9804..9804 +
1691683617.6231205-UTR-L-elsbetiae_contig5097:9803..98041691683617.6231205-UTR-L-elsbetiae_contig5097:9803..9804Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5097 9804..9804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816518.2412446-CDS-L-elsbetiae_contig5097:9804..102451622816518.2412446-CDS-L-elsbetiae_contig5097:9804..10245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5097 9805..10245 +
1691683617.6420033-CDS-L-elsbetiae_contig5097:9804..102451691683617.6420033-CDS-L-elsbetiae_contig5097:9804..10245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5097 9805..10245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5097.13136.1prot_L-elsbetiae_contig5097.13136.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5097 9805..10245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5097.13136.1

>prot_L-elsbetiae_contig5097.13136.1 ID=prot_L-elsbetiae_contig5097.13136.1|Name=mRNA_L-elsbetiae_contig5097.13136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MSTPGSHHHAAPAPAAPALSPELGKAEARQASNLRVTTKAIDALHARIAK
AKLALDGQQGNAAASSPAAAAGSPSRSRARAAAVAAGAGKSPTKSPSKGK
GSSASKPPTISSRNPAAKSTAAAGGEAGEKSPPQAMELVGGGEVDGG
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mRNA from alignment at L-elsbetiae_contig5097:9804..10245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5097.13136.1 ID=mRNA_L-elsbetiae_contig5097.13136.1|Name=mRNA_L-elsbetiae_contig5097.13136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=442bp|location=Sequence derived from alignment at L-elsbetiae_contig5097:9804..10245+ (Laminarionema elsbetiae ELsaHSoW15)
AATGTCGACTCCGGGCTCACACCACCATGCCGCCCCCGCCCCTGCCGCCC
CCGCCCTTAGCCCGGAGCTGGGCAAGGCCGAAGCCCGGCAGGCCAGCAAC
CTCCGGGTGACCACGAAGGCGATAGACGCCCTGCACGCCCGCATCGCCAA
GGCCAAACTGGCGCTGGACGGGCAGCAGGGCAACGCGGCTGCTTCGTCGC
CGGCAGCGGCAGCAGGGTCTCCGTCGAGATCGAGGGCGAGGGCGGCGGCG
GTGGCGGCAGGGGCGGGGAAGTCTCCGACAAAGTCCCCGTCCAAGGGTAA
GGGATCGTCGGCCTCCAAGCCGCCGACGATCAGCAGCAGAAACCCCGCGG
CGAAATCGACGGCGGCTGCGGGCGGGGAGGCGGGAGAAAAGTCTCCCCCT
CAGGCGATGGAGTTAGTAGGAGGCGGGGAGGTGGATGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5097:9804..10245+

>mRNA_L-elsbetiae_contig5097.13136.1 ID=mRNA_L-elsbetiae_contig5097.13136.1|Name=mRNA_L-elsbetiae_contig5097.13136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig5097:9804..10245+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACTCCGGGCTCACACCACCATGCCGCCCCCGCCCCTGCCGCCCC
CGCCCTTAGCCCGGAGCTGGGCAAGGCCGAAGCCCGGCAGGCCAGCAACC
TCCGGGTGACCACGAAGGCGATAGACGCCCTGCACGCCCGCATCGCCAAG
GCCAAACTGGCGCTGGACGGGCAGCAGGGCAACGCGGCTGCTTCGTCGCC
GGCAGCGGCAGCAGGGTCTCCGTCGAGATCGAGGGCGAGGGCGGCGGCGG
TGGCGGCAGGGGCGGGGAAGTCTCCGACAAAGTCCCCGTCCAAGGGTAAG
GGATCGTCGGCCTCCAAGCCGCCGACGATCAGCAGCAGAAACCCCGCGGC
GAAATCGACGGCGGCTGCGGGCGGGGAGGCGGGAGAAAAGTCTCCCCCTC
AGGCGATGGAGTTAGTAGGAGGCGGGGAGGTGGATGGCGGCATGTCGACT
CCGGGCTCACACCACCATGCCGCCCCCGCCCCTGCCGCCCCCGCCCTTAG
CCCGGAGCTGGGCAAGGCCGAAGCCCGGCAGGCCAGCAACCTCCGGGTGA
CCACGAAGGCGATAGACGCCCTGCACGCCCGCATCGCCAAGGCCAAACTG
GCGCTGGACGGGCAGCAGGGCAACGCGGCTGCTTCGTCGCCGGCAGCGGC
AGCAGGGTCTCCGTCGAGATCGAGGGCGAGGGCGGCGGCGGTGGCGGCAG
GGGCGGGGAAGTCTCCGACAAAGTCCCCGTCCAAGGGTAAGGGATCGTCG
GCCTCCAAGCCGCCGACGATCAGCAGCAGAAACCCCGCGGCGAAATCGAC
GGCGGCTGCGGGCGGGGAGGCGGGAGAAAAGTCTCCCCCTCAGGCGATGG
AGTTAGTAGGAGGCGGGGAGGTGGATGGCGGC
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