mRNA_L-elsbetiae_contig509.13127.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig509.13127.1
Unique NamemRNA_L-elsbetiae_contig509.13127.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig509.13127.1 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.480e-36
Identity = 82/196 (41.84%), Postives = 117/196 (59.69%), Query Frame = 1 
Query:   67 HSGSSLKVGEVLTGTLLDPSGNSAIFASRDDASVMFMKAID------DGSETGVPKAAMSTLIAANARKVAKVHQIRRDIAEEEEAEERRIREGESPGKNKL----GWLPLGKGGFIQRRQRERAKKHLGQVEITISDKGILNASMDGRTVLTKGGRGPSWLFEGFFRRRDPSYQGWATDDGCDVTLKGDIVWGVK 624
            H   SLKVGEVLTGTL+ P+  S IFASR+D +++F KA        DG  TG     ++TL+A++  KVAK   IR ++  EE  E     EG+S  +  L    GW+P GKGGF++RR RE AK H+G+V + ++++G L  S+DG  V  K G  PSW     +R +DPSY+ W +  G ++T  G + W ++
Sbjct:  137 HPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARKSG--PSWFG---YRTKDPSYELWVSHSGVEITRNGMLDWSIE 327
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BLAST of mRNA_L-elsbetiae_contig509.13127.1 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 9.250e-27
Identity = 68/172 (39.53%), Postives = 101/172 (58.72%), Query Frame = 1 
Query:  139 IFASRDDASVMFMKAI------DDGSETGVPKAAMSTLIAANARKVAKVHQIRRDIAEEEEAEERRIREGESPGKNKL----GWLPLGKGGFIQRRQRERAKKHLGQVEITISDKGILNASMDGRTVLTKGGRGPSWLFEGFFRRRDPSYQGWATDDGCDVTLKGDIVWGVK 624
            ++A+  D SV+F  +       ++G  TG       TL+AAN R +AK    R +I      ++  +REG +  K+K+    G+LP GK GF+ RR R+RA+ HLG+  + ++ KGIL  S+DG  VL K  +GPS+     FRR DPSY+   T++G +V+ +GD VWGVK
Sbjct:    2 VYAAPADGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRK--KGPSYFG---FRRTDPSYELQVTEEGIEVSRRGDFVWGVK 168
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig509.13127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHB6_ECTSI4.480e-3641.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTM0_ECTSI9.250e-2739.53Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig509contigL-elsbetiae_contig509:4380..5395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size653
Cds size651
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816517.1481252-CDS-L-elsbetiae_contig509:4379..48411622816517.1481252-CDS-L-elsbetiae_contig509:4379..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig509 4380..4841 +
1691683616.8241487-CDS-L-elsbetiae_contig509:4379..48411691683616.8241487-CDS-L-elsbetiae_contig509:4379..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig509 4380..4841 +
1622816517.1584337-CDS-L-elsbetiae_contig509:5206..53951622816517.1584337-CDS-L-elsbetiae_contig509:5206..5395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig509 5207..5395 +
1691683616.834975-CDS-L-elsbetiae_contig509:5206..53951691683616.834975-CDS-L-elsbetiae_contig509:5206..5395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig509 5207..5395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig509.13127.1prot_L-elsbetiae_contig509.13127.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig509 4380..5395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig509.13127.1

>prot_L-elsbetiae_contig509.13127.1 ID=prot_L-elsbetiae_contig509.13127.1|Name=mRNA_L-elsbetiae_contig509.13127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=217bp
NGSNGSNGSIVSEFFLRAGLTPHSGSSLKVGEVLTGTLLDPSGNSAIFAS
RDDASVMFMKAIDDGSETGVPKAAMSTLIAANARKVAKVHQIRRDIAEEE
EAEERRIREGESPGKNKLGWLPLGKGGFIQRRQRERAKKHLGQVEITISD
KGILNASMDGRTVLTKGGRGPSWLFEGFFRRRDPSYQGWATDDGCDVTLK
GDIVWGVKDDHTPPPF*
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mRNA from alignment at L-elsbetiae_contig509:4380..5395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig509.13127.1 ID=mRNA_L-elsbetiae_contig509.13127.1|Name=mRNA_L-elsbetiae_contig509.13127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1016bp|location=Sequence derived from alignment at L-elsbetiae_contig509:4380..5395+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCAGCAACGGCAGCAACGGCAGCATCGTCAGCGAGTTCTTCCTCCG
GGCCGGCCTAACCCCGCACAGCGGCTCATCTTTGAAGGTTGGAGAGGTGC
TGACGGGGACGCTCTTGGACCCCAGCGGAAACTCAGCAATTTTCGCCAGC
CGGGACGACGCTTCCGTGATGTTCATGAAGGCCATCGACGACGGCAGCGA
GACGGGCGTGCCCAAGGCAGCCATGTCCACACTGATAGCTGCCAACGCCA
GGAAGGTGGCCAAGGTCCATCAGATTCGCCGCGATATCGCTGAAGAGGAG
GAGGCTGAGGAGCGCAGGATCCGGGAAGGAGAGAGCCCGGGGAAGAACAA
GCTGGGCTGGCTACCTCTGGGAAAGGGGGGGTTTATCCAGCGGCGCCAGA
GAGAGCGCGCCAAGAAGCACCTCGGACAAGTGGAAATCACCATCTCCGAC
AAAGGAATCCTGGTAGGAAGCCCTCCTCGTTTCTTAGGGTTAGGGTTAGG
GTTAGGAAGCTAACCCTAACCCTAACCCTAACCCTAAACCCTAACCCTAA
CCCTATCCTGGTAGGAAGCCCTCCTCGTTTCCCCCCGGCCCCCACCTGCT
CCTCCCGTTTTTGTCTCGCGCACAACAACATAATATTCACATATATGCAG
CAGGCAGCAGACAGGGTGGCTGGAGTGCGAGAATTGTTGGCAAGGGTTGC
TAAGCCCCCTGCAACGTTGTTCCAATAAATACCCTTCCACCAACTGACAC
GCACCTTTGCGCCCCTCTCCTCTGCTTTCTTTCTGGATTGTTTTGCTATC
TATGTACGCCTTCCGCCAACCCCGCAGAACGCATCGATGGATGGCAGGAC
TGTCCTCACGAAGGGGGGGCGAGGGCCGTCATGGCTGTTCGAGGGGTTCT
TCCGACGGAGGGACCCTTCTTACCAAGGTTGGGCTACCGACGATGGGTGT
GACGTCACCTTGAAAGGAGACATTGTGTGGGGCGTCAAGGACGACCACAC
CCCTCCGCCTTTTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig509:4380..5395+

>mRNA_L-elsbetiae_contig509.13127.1 ID=mRNA_L-elsbetiae_contig509.13127.1|Name=mRNA_L-elsbetiae_contig509.13127.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1302bp|location=Sequence derived from alignment at L-elsbetiae_contig509:4380..5395+ (Laminarionema elsbetiae ELsaHSoW15)
AACGGCAGCAACGGCAGCAACGGCAGCATCGTCAGCGAGTTCTTCCTCCG
GGCCGGCCTAACCCCGCACAGCGGCTCATCTTTGAAGGTTGGAGAGGTGC
TGACGGGGACGCTCTTGGACCCCAGCGGAAACTCAGCAATTTTCGCCAGC
CGGGACGACGCTTCCGTGATGTTCATGAAGGCCATCGACGACGGCAGCGA
GACGGGCGTGCCCAAGGCAGCCATGTCCACACTGATAGCTGCCAACGCCA
GGAAGGTGGCCAAGGTCCATCAGATTCGCCGCGATATCGCTGAAGAGGAG
GAGGCTGAGGAGCGCAGGATCCGGGAAGGAGAGAGCCCGGGGAAGAACAA
GCTGGGCTGGCTACCTCTGGGAAAGGGGGGGTTTATCCAGCGGCGCCAGA
GAGAGCGCGCCAAGAAGCACCTCGGACAAGTGGAAATCACCATCTCCGAC
AAAGGAATCCTGAACGGCAGCAACGGCAGCAACGGCAGCATCGTCAGCGA
GTTCTTCCTCCGGGCCGGCCTAACCCCGCACAGCGGCTCATCTTTGAAGG
TTGGAGAGGTGCTGACGGGGACGCTCTTGGACCCCAGCGGAAACTCAGCA
ATTTTCGCCAGCCGGGACGACGCTTCCGTGATGTTCATGAAGGCCATCGA
CGACGGCAGCGAGACGGGCGTGCCCAAGGCAGCCATGTCCACACTGATAG
CTGCCAACGCCAGGAAGGTGGCCAAGGTCCATCAGATTCGCCGCGATATC
GCTGAAGAGGAGGAGGCTGAGGAGCGCAGGATCCGGGAAGGAGAGAGCCC
GGGGAAGAACAAGCTGGGCTGGCTACCTCTGGGAAAGGGGGGGTTTATCC
AGCGGCGCCAGAGAGAGCGCGCCAAGAAGCACCTCGGACAAGTGGAAATC
ACCATCTCCGACAAAGGAATCCTGAACGCATCGATGGATGGCAGGACTGT
CCTCACGAAGGGGGGGCGAGGGCCGTCATGGCTGTTCGAGGGGTTCTTCC
GACGGAGGGACCCTTCTTACCAAGGTTGGGCTACCGACGATGGGTGTGAC
GTCACCTTGAAAGGAGACATTGTGTGGGGCGTCAAGGACGACCACACCCC
TCCGCCTTTTTAAAACGCATCGATGGATGGCAGGACTGTCCTCACGAAGG
GGGGGCGAGGGCCGTCATGGCTGTTCGAGGGGTTCTTCCGACGGAGGGAC
CCTTCTTACCAAGGTTGGGCTACCGACGATGGGTGTGACGTCACCTTGAA
AGGAGACATTGTGTGGGGCGTCAAGGACGACCACACCCCTCCGCCTTTTT
AA
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