mRNA_L-elsbetiae_contig5086.13124.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5086.13124.1
Unique NamemRNA_L-elsbetiae_contig5086.13124.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: D7FJP4_ECTSI (Hydroxyacylglutathione hydrolase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 6.860e-31
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    1 VSNALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPSTAS 195
            VSNALQGVAA LP  TRVFCGHEYTVSNLQFA+SVEP N AV DKLDWSRR+LA GGYTVPST S
Sbjct:    9 VSNALQGVAASLPGATRVFCGHEYTVSNLQFAKSVEPENSAVLDKLDWSRRVLAKGGYTVPSTIS 73          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: A0A6H5L1C0_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.340e-29
Identity = 54/65 (83.08%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 VSNALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPSTAS 195
            +SNALQGVAA LP  TRVFCGHEYTVSNLQFA+SVEP N AV DKLDWSRR+LA GGYTVPSTA+
Sbjct:  268 MSNALQGVAASLPGATRVFCGHEYTVSNLQFAKSVEPENSAVLDKLDWSRRVLAKGGYTVPSTAN 332          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: D7FJP8_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.510e-28
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    1 VSNALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPSTAS 195
            +SNALQGVAA LP  TRVFCGHEYTVSNLQFA+SVEP N AV DKLDWSRR+LA GGYTVPST S
Sbjct:  245 MSNALQGVAASLPGATRVFCGHEYTVSNLQFAKSVEPENSAVLDKLDWSRRVLAKGGYTVPSTIS 309          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: A0A8C3W9H4_9CETA (Hydroxyacylglutathione hydrolase n=1 Tax=Catagonus wagneri TaxID=51154 RepID=A0A8C3W9H4_9CETA)

HSP 1 Score: 81.6 bits (200), Expect = 6.030e-17
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:   10 ALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPST 189
            AL  V  +LPADTRV+CGHEYT++NL+FAR VEPGN AV +KL W++   + G  TVPST
Sbjct:  204 ALLEVLGRLPADTRVYCGHEYTINNLKFARHVEPGNAAVQEKLAWAKEKYSIGEPTVPST 263          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: E9PYA3_MOUSE (Hydroxyacylglutathione hydrolase, mitochondrial (Fragment) n=2 Tax=Muroidea TaxID=337687 RepID=E9PYA3_MOUSE)

HSP 1 Score: 79.7 bits (195), Expect = 1.230e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   10 ALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPST 189
            AL  V  +LP DT+V+CGHEYTV+NL+FAR VEPGN A+ +KL W++   A G  TVPST
Sbjct:  132 ALLEVLGRLPPDTKVYCGHEYTVNNLKFARHVEPGNAAIQEKLAWAKEKYAIGEPTVPST 191          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: A0A0G4HI18_9ALVE (Lactamase_B domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HI18_9ALVE)

HSP 1 Score: 81.3 bits (199), Expect = 1.240e-16
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   10 ALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPST 189
            AL+GV  +LP +T+VFCGHEYT SNL+FA +VEPGN  + +K  W+ R L  GG TVPST
Sbjct:  243 ALRGVIGQLPPNTQVFCGHEYTKSNLKFALAVEPGNQVLQEKFAWTERTLKEGGVTVPST 302          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: A0A2K6TMS2_SAIBB (Hydroxyacylglutathione hydrolase n=3 Tax=Platyrrhini TaxID=9479 RepID=A0A2K6TMS2_SAIBB)

HSP 1 Score: 80.1 bits (196), Expect = 1.260e-16
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   10 ALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPST 189
            AL  V  +LPADTRV+CGHEYT++NL+FAR VEPGN AV +KL W++     G  TVPST
Sbjct:  155 ALLEVLGRLPADTRVYCGHEYTINNLKFARHVEPGNAAVQEKLVWAKEKYNIGEPTVPST 214          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: H9B9N7_EIMTE (Lactamase_B domain-containing protein n=3 Tax=Eimeria TaxID=5800 RepID=H9B9N7_EIMTE)

HSP 1 Score: 79.3 bits (194), Expect = 1.540e-16
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   10 ALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPST 189
            AL  +  +LPA+T V+CGHEYTV+NLQFA SVEP NPAV +KL+W+++   AG  T+PS+
Sbjct:  160 ALMKIIGELPAETLVYCGHEYTVANLQFAASVEPNNPAVQNKLEWAQQQRNAGKPTIPSS 219          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: UPI0003C8DF1E (hydroxyacylglutathione hydrolase, mitochondrial isoform X2 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C8DF1E)

HSP 1 Score: 79.3 bits (194), Expect = 2.440e-16
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   10 ALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPST 189
            AL  V  +LP DT+V+CGHEYT++NL+FAR VEP NPAV +KL W++     G  TVPST
Sbjct:  155 ALLEVLGRLPPDTKVYCGHEYTINNLKFARHVEPSNPAVQEKLTWAKEKYGIGEPTVPST 214          
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Match: H3BPK3_HUMAN (Hydroxyacylglutathione hydrolase, mitochondrial (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=H3BPK3_HUMAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.500e-16
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   10 ALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSRRILAAGGYTVPST 189
            AL  V  +LP DTRV+CGHEYT++NL+FAR VEPGN A+ +KL W++   + G  TVPST
Sbjct:  134 ALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPST 193          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5086.13124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJP4_ECTSI6.860e-3184.62Hydroxyacylglutathione hydrolase, putative n=1 Tax... [more]
A0A6H5L1C0_9PHAE5.340e-2983.08Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
D7FJP8_ECTSI1.510e-2883.08Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A8C3W9H4_9CETA6.030e-1761.67Hydroxyacylglutathione hydrolase n=1 Tax=Catagonus... [more]
E9PYA3_MOUSE1.230e-1660.00Hydroxyacylglutathione hydrolase, mitochondrial (F... [more]
A0A0G4HI18_9ALVE1.240e-1660.00Lactamase_B domain-containing protein n=1 Tax=Chro... [more]
A0A2K6TMS2_SAIBB1.260e-1661.67Hydroxyacylglutathione hydrolase n=3 Tax=Platyrrhi... [more]
H9B9N7_EIMTE1.540e-1658.33Lactamase_B domain-containing protein n=3 Tax=Eime... [more]
UPI0003C8DF1E2.440e-1658.33hydroxyacylglutathione hydrolase, mitochondrial is... [more]
H3BPK3_HUMAN2.500e-1658.33Hydroxyacylglutathione hydrolase, mitochondrial (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5086contigL-elsbetiae_contig5086:10000..10197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue2.7e-23
Seed eggNOG ortholog2880.D7FJP4
KEGG rclassRC00004,RC00137
KEGG koko:K01069
KEGG ReactionR01736
KEGG Pathwayko00620,map00620
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydroxyacylglutathione hydrolase activity
EggNOG OGsCOG0491@1,KOG0813@2759
EC3.1.2.6
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-06_010680.1
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816516.8587437-CDS-L-elsbetiae_contig5086:9999..101971622816516.8587437-CDS-L-elsbetiae_contig5086:9999..10197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5086 10000..10197 -
1691683616.639001-CDS-L-elsbetiae_contig5086:9999..101971691683616.639001-CDS-L-elsbetiae_contig5086:9999..10197Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5086 10000..10197 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5086.13124.1prot_L-elsbetiae_contig5086.13124.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5086 10000..10197 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5086.13124.1

>prot_L-elsbetiae_contig5086.13124.1 ID=prot_L-elsbetiae_contig5086.13124.1|Name=mRNA_L-elsbetiae_contig5086.13124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
VSNALQGVAAKLPADTRVFCGHEYTVSNLQFARSVEPGNPAVSDKLDWSR
RILAAGGYTVPSTASC
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mRNA from alignment at L-elsbetiae_contig5086:10000..10197-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5086.13124.1 ID=mRNA_L-elsbetiae_contig5086.13124.1|Name=mRNA_L-elsbetiae_contig5086.13124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig5086:10000..10197- (Laminarionema elsbetiae ELsaHSoW15)
GTGTCCAATGCTCTCCAAGGCGTTGCGGCTAAGCTCCCGGCCGACACCCG GGTTTTCTGCGGGCACGAGTACACCGTGAGCAACCTGCAGTTCGCTCGAT CAGTGGAGCCCGGGAATCCGGCCGTGTCGGACAAGCTGGATTGGTCCAGA AGAATTCTTGCGGCAGGGGGGTACACTGTTCCATCCACGGCAAGTTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5086:10000..10197-

>mRNA_L-elsbetiae_contig5086.13124.1 ID=mRNA_L-elsbetiae_contig5086.13124.1|Name=mRNA_L-elsbetiae_contig5086.13124.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig5086:10000..10197- (Laminarionema elsbetiae ELsaHSoW15)
GTGTCCAATGCTCTCCAAGGCGTTGCGGCTAAGCTCCCGGCCGACACCCG
GGTTTTCTGCGGGCACGAGTACACCGTGAGCAACCTGCAGTTCGCTCGAT
CAGTGGAGCCCGGGAATCCGGCCGTGTCGGACAAGCTGGATTGGTCCAGA
AGAATTCTTGCGGCAGGGGGGTACACTGTTCCATCCACGGCAAGTTGTGT
GTCCAATGCTCTCCAAGGCGTTGCGGCTAAGCTCCCGGCCGACACCCGGG
TTTTCTGCGGGCACGAGTACACCGTGAGCAACCTGCAGTTCGCTCGATCA
GTGGAGCCCGGGAATCCGGCCGTGTCGGACAAGCTGGATTGGTCCAGAAG
AATTCTTGCGGCAGGGGGGTACACTGTTCCATCCACGGCAAGTTGT
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