mRNA_L-elsbetiae_contig5081.13116.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5081.13116.1
Unique NamemRNA_L-elsbetiae_contig5081.13116.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: D7FZ29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ29_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 4.820e-55
Identity = 141/352 (40.06%), Postives = 193/352 (54.83%), Query Frame = 1 
Query:    4 LIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR*QGLPCH*RRGSR*FLTGWTDSEDTVLTLTAESDGVAERAPFYGRRFEGFVTSSKKEEEEAKKEKGDAWRPPQQDVTKRAEEAFDSAYRSGRFKKKATAPA-TCICKGRLPDGIPVDTTPKRIRKDLSDKKKDLNLAPMSD--LPEEDMLQLCARTTS-QLKWTLKVNTNGNQS-LHFTDGLTYQPRASQIPIWGTAVVFDSKGEAEQWLHDSYMED-SADMQYVRLVFVADYVLLKRM 1041
            +++ED GLVVEYGSRGGG T++ K+KF+ G LD+YI+AH +   D G + FTC+  VTP +F  R  A  +  +T ST  S  R  + LM DVP K   R   +NV+ FAIQR                  WT + DTV+++ AESDGV E A   GR+ E F+ +S  E   A              VT R EEA++ A+R G F    +A   T I  G LPDGIP  TTP RI  D++ +  +L      D   P+E  L   A+  + Q+ W +KVN++ +   L   +  +YQ   + IP+ G  VV+DS G+A   L+   +ED S D+Q+VRLV VAD  LLK+M
Sbjct:  208 MVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNGCGDGGGMNFTCNDTVTPQSFTGRRSAGSSDGSTWSTA-SGRRIPSPLMGDVPRKGVTRGYHDNVVQFAIQR------------------WTKAGDTVVSMHAESDGVVECALNLGRKVEAFLVAS--EHHGA--------------VTTRVEEAWEGAWRKGLFTDDGSASEITYISHGSLPDGIPETTTPNRILADVNTRTNNLREGGSVDGATPDERALLGAAQAIAEQMGWVIKVNSDDDLPYLCARNKTSYQTTHNDIPVSGNPVVYDSHGQALDSLN---IEDHSTDLQFVRLVRVADNGLLKKM 521
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BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: A0A6H5JK41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK41_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 9.730e-54
Identity = 138/351 (39.32%), Postives = 188/351 (53.56%), Query Frame = 1 
Query:    4 LIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR*QGLPCH*RRGSR*FLTGWTDSEDTVLTLTAESDGVAERAPFYGRRFEGFVTSSKKEEEEAKKEKGDAWRPPQQDVTKRAEEAFDSAYRSGRFKKKATAPA-TCICKGRLPDGIPVDTTPKRIRKDLSDKKKDLNLAPMSD--LPEEDMLQLCARTTS-QLKWTLKVN-TNGNQSLHFTDGLTYQPRASQIPIWGTAVVFDSKGEAEQWLHDSYMEDSADMQYVRLVFVADYVLLKRM 1041
            +++ED GLVVEYGSRGGG T++ K+KF+ G LD+YI+AH +   D G + FTC+  VTP +F  +  A  +  +T ST  S  R  + LM DVPHK   R   +NV+ FAIQR                  WT + DTV+++ AESDGV E A   GR+ E F+ +S  E   A              VT R EEA++ A+R G F     A   T I  G LPDGIP  TTP RI  D++ +  +L      D   P+E  L   A+  + Q+ W +KVN  +    L   +  +Y+   + IP+WG  VV+DS  +A   L+      S D+Q+VRLV VAD  LLK+M
Sbjct:  709 MVVEDHGLVVEYGSRGGGLTAESKKKFIGGALDHYIVAHHNASGDGGGMNFTCNDTVTPQSFTGKLSAGSSDGSTWSTA-SGRRIPSPLMGDVPHKGVTRGYHDNVVQFAIQR------------------WTKAGDTVVSMHAESDGVVEGALNLGRKVEAFLVAS--EHHGA--------------VTTRVEEAWEGAWRKGLFTDDGDASEITYISHGSLPDGIPEITTPHRILADVNTRTNNLREGGRVDGTTPDERALLGAAQAIAEQMGWAIKVNPVDDLPYLCARNKTSYRTAHNDIPVWGKTVVYDSHRQALDSLNVG--NHSTDLQFVRLVRVADNELLKKM 1022
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BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: A0A6H5J8R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.560e-11
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:    1 QLIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR 342
            +L +E  GLVVEYG+RGGG+ S +K   LT G+DY +IAH+   D      FT + KV P  FD   R    R T ++   S       +M  VP+    + L +NV  +AIQR
Sbjct:   34 KLTLEQHGLVVEYGTRGGGQVSPKKALHLTTGVDYLLIAHRQGDD------FTYNDKVIPQKFDGCQRTDEGRHTPNTAAAS-------VMNGVPYVGAKKRLSDNVAVWAIQR 134
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BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: D7G3U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U5_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.980e-8
Identity = 67/264 (25.38%), Postives = 99/264 (37.50%), Query Frame = 1 
Query:  262 TALMYDVPHKPPARALPNNVLNFAIQR*QGLPCH*RRGSR*FLTGWTDSEDTVLTLTAESDGVAERAPFYGRRFEGFVTSSKKEEEEAKKEKGDAWRPPQQDVTKRAEEAFDSAYRSGRFKKKATAPATCICK-GRLPDGIPVDTTPKRIRKDLSDKKKDLNLAPMSDLPEEDMLQLCARTTSQLKWTLKVNTNGNQSLHFTDGLTYQPRASQIPIWGTAVVFDSKGEAEQWLHDSYMEDSADMQYVRLVFVADYVLLKRMVDP 1050
            T+++ DVP++      P+ VL     R                  +T+  DT++ L AE +         GRR E +VTS      E   E    W           E AF +AY  G F+ +   P     K GRLP G+P+DTTP                      P+E                       +++L+   G+ Y P    + IWG   V+DS+ +A    + S  ED+ D +YVRL+  A    L+    P
Sbjct:  394 TSILTDVPYEGADVDWPSKVLLLLTNR------------------YTNQGDTIIVLGAERNACVATGLARGRRVEAYVTS------ETHVEHVQEW----------GETAFRTAYTRGIFQPEVVVPTEVEIKPGRLPRGLPLDTTP----------------------PKETQFD-------------------DRALYTAPGVNYTPGTFDLLIWGCLHVYDSRRDA----YLSLDEDAHDKRYVRLIRAASNAQLRACCTP 578
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BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Match: D7FHU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHU2_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.590e-8
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:    1 QLIIEDMGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQKVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNNVLNFAIQR 342
            +L +E  GLVVEYGSRGGG  S +K   L  G+D++++AH+   +      FTC++KV P  FD   R +  +   ++   S    TTA    VP+    +   +++  + IQR
Sbjct:   59 KLTLEQHGLVVEYGSRGGGLVSPKKALHLATGVDHFLVAHRQGDN------FTCNEKVIPQKFDGMLRTSEGKHDPNTAAAS---VTTA----VPYLGAKKRFSDDIAVWVIQR 159
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5081.13116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZ29_ECTSI4.820e-5540.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK41_9PHAE9.730e-5439.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8R0_9PHAE3.560e-1139.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3U5_ECTSI1.980e-825.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHU2_ECTSI6.590e-834.21Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5081contigL-elsbetiae_contig5081:4784..7278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, FYVE/PHD-type
Ec32 orthologEc-00_004430.1
Exons4
Model size1051
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5081.13116.1prot_L-elsbetiae_contig5081.13116.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5081 6934..7260 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816516.0767598-UTR-L-elsbetiae_contig5081:4783..50061622816516.0767598-UTR-L-elsbetiae_contig5081:4783..5006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 4784..5006 -
1691683616.04476-UTR-L-elsbetiae_contig5081:4783..50061691683616.04476-UTR-L-elsbetiae_contig5081:4783..5006Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 4784..5006 -
1622816516.0931838-UTR-L-elsbetiae_contig5081:5304..55081622816516.0931838-UTR-L-elsbetiae_contig5081:5304..5508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 5305..5508 -
1691683616.056854-UTR-L-elsbetiae_contig5081:5304..55081691683616.056854-UTR-L-elsbetiae_contig5081:5304..5508Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 5305..5508 -
1622816516.1093752-UTR-L-elsbetiae_contig5081:6058..62871622816516.1093752-UTR-L-elsbetiae_contig5081:6058..6287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 6059..6287 -
1691683616.0670877-UTR-L-elsbetiae_contig5081:6058..62871691683616.0670877-UTR-L-elsbetiae_contig5081:6058..6287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 6059..6287 -
1622816516.123759-UTR-L-elsbetiae_contig5081:6883..69331622816516.123759-UTR-L-elsbetiae_contig5081:6883..6933Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 6884..6933 -
1691683616.0785754-UTR-L-elsbetiae_contig5081:6883..69331691683616.0785754-UTR-L-elsbetiae_contig5081:6883..6933Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 6884..6933 -
1622816516.1580753-UTR-L-elsbetiae_contig5081:7260..72781622816516.1580753-UTR-L-elsbetiae_contig5081:7260..7278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 7261..7278 -
1691683616.095353-UTR-L-elsbetiae_contig5081:7260..72781691683616.095353-UTR-L-elsbetiae_contig5081:7260..7278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5081 7261..7278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816516.1410375-CDS-L-elsbetiae_contig5081:6933..72601622816516.1410375-CDS-L-elsbetiae_contig5081:6933..7260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 6934..7260 -
1691683616.0869255-CDS-L-elsbetiae_contig5081:6933..72601691683616.0869255-CDS-L-elsbetiae_contig5081:6933..7260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5081 6934..7260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5081.13116.1

>prot_L-elsbetiae_contig5081.13116.1 ID=prot_L-elsbetiae_contig5081.13116.1|Name=mRNA_L-elsbetiae_contig5081.13116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MGLVVEYGSRGGGRTSKEKQKFLTGGLDYYIIAHQSTKDDHGNLEFTCHQ
KVTPHNFDHRARATGTRRTTSSTGGSDERCTTALMYDVPHKPPARALPNN
VLNFAIQR*
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mRNA from alignment at L-elsbetiae_contig5081:4784..7278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5081.13116.1 ID=mRNA_L-elsbetiae_contig5081.13116.1|Name=mRNA_L-elsbetiae_contig5081.13116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2495bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:4784..7278- (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGATCATCGAAGATATGGGGTTGGTGGTTGAGTACGGGTCCAGGGG
GGGGGGGAGGACGAGCAAGGAGAAACAGAAGTTCCTCACCGGTGGCCTCG
ACTACTACATCATAGCCCACCAGAGCACGAAGGACGACCACGGCAATCTC
GAGTTCACCTGCCACCAGAAGGTCACCCCGCACAACTTCGATCACCGGGC
ACGAGCCACAGGCACCAGGCGCACCACCTCCTCGACCGGTGGTTCAGATG
AACGCTGCACTACGGCGTTGATGTACGACGTGCCACACAAGCCCCCCGCC
CGGGCGCTCCCGAACAACGTTCTCAACTTCGCCATTCAAAGGTGACAAGG
ACTGCCGTGCCATTGACGTCGTGGTAGCCGGTAGTTCCTAACCGGGTGAG
GGCGAGCGGGAATATTTGTTTGCCCTTCTTATCACAGGATGTCGATTCGG
CGCAGTAGTATGTATGTATGTATGTTGTATGTTGTCTTCACATTAAAAAC
CGTGCCGATCTCTCCATCCAGTACTTCTCAATGTCCGTACTAATCCAACA
CTTGATGCGGTCAATTCCCGTGGTCACAGGCTAACTTATACCTAAGAAAA
GGTACCCGAAACATAAAATGGACCCGAAGGGCCAGCAAAGCAATAATATA
ACAGGTATCGAGTCTGGAGCCCTTCGCTTCCCTCTACACGCAATGTGAGG
TAAAAAAAAAACTGGAACAACCAACATCATCACTATCTTGGTACCATGCA
TGCGGGAAAAAAACGGACTATTTCGCCGCATCTCGCCGCTCTCCGCCCTT
TGCCCCGACGAGTACCGTCAATCCTGCGCGCTGTGTACGATCACGCGCCT
TCTCATTTTGTCCCCCGCCGCCCCGCGCTCAATCAAGCATTGTGTACAAA
ATAAATGCTCTACTCATTATTATGATGTCTCCACCGTCACCATCGCGACG
CCACTCCACGCTCGTGTGTTTACAACATTGCTGCTGCGCAGGTGGACCGA
CAGCGAGGACACGGTGCTGACGTTGACCGCCGAGTCCGACGGGGTCGCCG
AACGTGCACCCTTCTACGGGAGGAGGTTCGAGGGCTTCGTCACATCGTCA
AAAAAAGAAGAAGAAGAGGCAAAGAAGGAGAAGGGAGACGCGTGGAGACC
GCCGCAACAAGACGTGACGAAACGTGCCGAGGAGGCGTTCGACTCGGCGT
ACCGGTCCGGCCGGTTCAAGGTCATTATTAGTGCAACCCTCTAGTCTGCC
GGTGTCATGTGCAACTACGTGGGGAATGGGGACAAGGCTTCCAAGCACTC
CATAATAATAAGGTAGCTACGCAGTTCCATCGCCCTCTCACAGACAGCTG
TTTGTTGCTGAAACCTGCTGCGTGTGAAGATGTTTGTTGTACTATGTAGC
CAGCTTTCTTCATGTACAATTGTGAAGGTCAATCGATATTGCTTTTGGTG
TGACCTAAGCCACAGACAAAAGAGGTAGGGTAGGAAAGTAGGGCGAGGCA
TAGGATCTGGCTACGATGACGTTGTTGGGGATAATATAATCTTGATTATA
TCTATATCTTCGACGCCGGTACCAACAACATCATGCATTTTTTCAAGCGG
AGGGCTGTTGTTGGCTGGCGATTTGGCTGCATGCAATTTTGAGCACGCAC
GCTTTGGCGTGAACGTCCGTCCCATTCAACTAACTGCGCATCCCACCACG
CCCGCCCTAGTTGGAGCAACAACAAACTTGGCGAACACGCCTCCGCACTC
TCGACCTACATACCACACAGAAAAAGGCAACCGCGCCCGCGACGTGCATC
TGCAAAGGCCGACTCCCGGACGGCATCCCGGTGGACACGACCCCCAAGAG
AATCCGCAAGGATTTAAGCGACAAGAAGAAGGATCTCAATCTCGCGCCCA
TGTCCGATCTTCCCGAGGAGGACATGTTGCAGTTGTGTGCTAGAACCACA
AGCCAACTGAAATGGACCCTGAAGGTGGGCGCGTCGCGGGTGAAACAGCT
GTGTGTCGTATATAAAAGCATGACGTGCCTGGTCTCGCCAAACAAACGCT
TGTTGTTTCTACATGTACATACACTCAGCGTGCGGCGCCGCAAACTTGGT
TTCGCCCAGATCACGTCCTCGTGTTTTACGGGTTGAATAGTATTCATAAT
ATTGTTTGTCACCCCAAGAAAAAAGCCAACACCGTCATCTTCATTATTTC
TCACCCACTACGGTGTTGAGCCCTCACCAACAACAGACAGACCTACGTAC
TCGCTCGATGTTTGTGCTACAGGTAAACACGAACGGAAATCAGTCGCTGC
ACTTCACCGACGGCCTCACGTACCAGCCGAGAGCATCGCAGATTCCCATC
TGGGGTACTGCCGTCGTCTTCGACAGTAAAGGCGAGGCCGAGCAATGGTT
GCACGACAGCTACATGGAGGACTCCGCCGACATGCAGTACGTGAGGCTCG
TGTTCGTGGCGGACTACGTCCTGCTGAAACGAATGGTGGATCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5081:4784..7278-

>mRNA_L-elsbetiae_contig5081.13116.1 ID=mRNA_L-elsbetiae_contig5081.13116.1|Name=mRNA_L-elsbetiae_contig5081.13116.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig5081:4784..7278- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTTGGTGGTTGAGTACGGGTCCAGGGGGGGGGGGAGGACGAGCAA
GGAGAAACAGAAGTTCCTCACCGGTGGCCTCGACTACTACATCATAGCCC
ACCAGAGCACGAAGGACGACCACGGCAATCTCGAGTTCACCTGCCACCAG
AAGGTCACCCCGCACAACTTCGATCACCGGGCACGAGCCACAGGCACCAG
GCGCACCACCTCCTCGACCGGTGGTTCAGATGAACGCTGCACTACGGCGT
TGATGTACGACGTGCCACACAAGCCCCCCGCCCGGGCGCTCCCGAACAAC
GTTCTCAACTTCGCCATTCAAAGGTGAATGGGGTTGGTGGTTGAGTACGG
GTCCAGGGGGGGGGGGAGGACGAGCAAGGAGAAACAGAAGTTCCTCACCG
GTGGCCTCGACTACTACATCATAGCCCACCAGAGCACGAAGGACGACCAC
GGCAATCTCGAGTTCACCTGCCACCAGAAGGTCACCCCGCACAACTTCGA
TCACCGGGCACGAGCCACAGGCACCAGGCGCACCACCTCCTCGACCGGTG
GTTCAGATGAACGCTGCACTACGGCGTTGATGTACGACGTGCCACACAAG
CCCCCCGCCCGGGCGCTCCCGAACAACGTTCTCAACTTCGCCATTCAAAG
GTGA
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