mRNA_L-elsbetiae_contig5074.13104.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5074.13104.1
Unique NamemRNA_L-elsbetiae_contig5074.13104.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 1.140e-79
Identity = 137/192 (71.35%), Postives = 150/192 (78.12%), Query Frame = 1
Query:    1 MASRPRM-SGVGIGGVGCPPGTQFGGSRXXXXXXXXXXXXXXXXXXXXXXXGKGGKPDPWLAGTAPPCTTALAMSRDAARLRRLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPSRRLRQIAATFQRRHGVRPEKLMEGVCIQNAKNLDEQMMIIV 567
            M SR R+ SG GI GVGCPPG Q+G +R                       GK  KPDPWLAGTAP CTTALAMS+DAARL RLSFGC +LDAAFEGGVRVQG+TE   +AGAGKTQLCLQLLLQAQLA E GGLGGKSYVLTCGEGDFPSRRLRQ+A+T+Q RHGV+PEKLMEGVCIQNAK LD+QMMII+
Sbjct:    3 MDSRSRVVSGGGISGVGCPPGPQYGVNRRQSPHGQQPHRLS----------GKSSKPDPWLAGTAPECTTALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGVCIQNAKTLDDQMMIIM 184          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 8.130e-77
Identity = 136/192 (70.83%), Postives = 149/192 (77.60%), Query Frame = 1
Query:    1 MASRPRM-SGVGIGGVGCPPGTQFGGSRXXXXXXXXXXXXXXXXXXXXXXXGKGGKPDPWLAGTAPPCTTALAMSRDAARLRRLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPSRRLRQIAATFQRRHGVRPEKLMEGVCIQNAKNLDEQMMIIV 567
            M SR R+ SG GI GVGCPPG Q+G +R                       GK  KPDPWLAGTAP CTTALAM ++AARL RLSFGC +LDAAFEGGVRVQGITE   +AGAGKTQLCLQLLLQAQLA E GGLGGKSYVLTCGEGDFPSRRLRQ+A+T+Q RHGV+PEKLMEGVCIQNAK LD+QMMII+
Sbjct:    3 MDSRSRLVSGGGIRGVGCPPGPQYGVNRRQPPHGQQQHRLS----------GKSNKPDPWLAGTAPECTTALAMLKNAARLDRLSFGCPSLDAAFEGGVRVQGITEIAGEAGAGKTQLCLQLLLQAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQSRHGVKPEKLMEGVCIQNAKTLDDQMMIIM 184          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: A0A7S3F398_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F398_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.890e-13
Identity = 55/133 (41.35%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  238 LRRLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPS-----RRLRQIAATFQRRH---GVRPEKLMEGVCIQNAKN---LDEQMMIIVSAFLVAQQLR 597
            +R+LS GC +LD    GG+   GITE   +AGAGKTQL LQLLL+ QL    GGLGG +  L     D PS      RLR +AATF  +H   G   ++LM+ V +    +   L+E +   V + L  +Q+R
Sbjct:   33 MRKLSLGCPHLDRCLAGGIDHSGITEIAGEAGAGKTQLVLQLLLRVQLPHALGGLGGGAIFL---HSDAPSYMPAMSRLRSLAATFANQHRAYGATSDRLMDNVAVMQVDHPDDLEEILRTAVPSHLRVKQVR 162          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: A0A2G8LRK6_STIJA (Putative DNA repair protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LRK6_STIJA)

HSP 1 Score: 78.6 bits (192), Expect = 5.330e-13
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  241 RRLSFGCSNLDAAFEGGVRVQGITEA--KAGAGKTQLCLQLLLQAQLATEEGGL-GGKSYVLTCGEGDFPSRRLRQIAATFQRRH 486
            + LS GC  LD  F GG+  QGITE   ++ AGKTQLCLQL L AQL  E+GGL GG  YV  C E  FPS+RL+Q+  +F  +H
Sbjct:  106 KSLSLGCPILDEIFRGGILSQGITEVTGESAAGKTQLCLQLCLMAQLPLEDGGLNGGAVYV--CTEDVFPSKRLQQLIKSFPAQH 188          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: A0A537F041_9ARCH (DNA repair and recombination protein RadA n=4 Tax=Archaea TaxID=2157 RepID=A0A537F041_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 4.690e-12
Identity = 42/120 (35.00%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  238 LRRLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPSRRLRQIAATFQRRHGVRPEKLMEGVCIQNAKNLDEQMMIIVSAFLVAQQ 591
            L+RLSFG +NL+    GG+  Q ITE   + GAGK+Q+C++L + AQ   ++GGL G+   +   EG F ++R+ Q+A + Q    + PEK+++G+      N D Q++ +  +F + ++
Sbjct:   80 LQRLSFGSNNLNKLLGGGLETQAITEFVGEFGAGKSQICMRLSVNAQQLNKDGGLEGRVLFIDT-EGTFSAQRVHQMAQSLQ----LDPEKVLDGIIYSRVYNSDHQILTVDHSFKICKE 194          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: UPI001EE62721 (DNA repair protein XRCC3-like isoform X1 n=4 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE62721)

HSP 1 Score: 74.7 bits (182), Expect = 1.020e-11
Identity = 48/103 (46.60%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  193 PPCTTALAM---SRDAARLRRLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGL-GGKSYVLTCGEGDFPSRRLRQIAATFQRR 483
            PP  TAL +   S     +R+LS GC  +D   +GG+   GITE   ++ +GKTQLCLQL L AQL  E GGL GG  YV  C E  FP++RL Q+   F R+
Sbjct:   63 PPVVTALELLKGSGSVVPIRKLSTGCPIIDRHLKGGILSTGITEISGESASGKTQLCLQLCLTAQLPLEHGGLEGGAVYV--CTEDAFPNKRLHQVIQHFTRK 163          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: A0A0M0LPY7_9EUKA (DNA repair protein xrcc3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPY7_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 1.740e-11
Identity = 46/90 (51.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  229 AARLRRLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPS--RRLRQIAATFQRRH 486
            A   R L  GC +LDA   GG+   GITE   +AGAGKTQL LQL LQAQL   EGGLGG +  L  G  +     RRL Q+A  F +RH
Sbjct:    5 AGHTRLLKTGCPHLDAFLGGGIDTNGITEIAGEAGAGKTQLALQLTLQAQLPPAEGGLGGAAVYLYGGTANVEPALRRLHQLADAFAKRH 94          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: A0A7M7GGZ6_STRPU (RECA_2 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7GGZ6_STRPU)

HSP 1 Score: 73.9 bits (180), Expect = 2.010e-11
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  247 LSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPSRRLRQIAATFQRRHG 489
            L+ GC  LD    GG+ V+GITE   ++ AGKTQLCLQL L AQL  ++GGL     V  C E  FPS+RL+Q+ ++F RR G
Sbjct:   81 LTTGCPILDEFLHGGILVKGITEIAGQSAAGKTQLCLQLCLTAQLPVQQGGLAN-GVVYICTEDVFPSKRLQQLISSFNRRIG 162          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: A0A1Q3AVJ9_CEPFO (Rad51 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3AVJ9_CEPFO)

HSP 1 Score: 72.0 bits (175), Expect = 6.090e-11
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  241 RRLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKS-YVLTCGEGDFPSRRLRQIAATFQRRHG---VRPEKLMEGVCIQNAKNLDEQMMIIVSAFLVAQQLRSNLPMYTCIYQGV 636
            ++ + GC  LD   +GG+    +TE  A++G+GKTQLCLQL L AQL +  GGL   S Y+ T  E  FP RRL Q++ +FQ  H    V  +   + V +++  + D+ + I+  A      L++ LP+   +   +
Sbjct:   14 QKCTLGCPVLDRCLDGGIPCNSVTELVAESGSGKTQLCLQLSLMAQLPSSLGGLASSSLYIHT--EFPFPIRRLHQLSTSFQHLHPQLYVHGDNPCDYVFVRSVYSADQLLDIMSKAEFFIANLKTRLPVRLVVIDSI 149          
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Match: D6WL17_TRICA (Spindle B n=3 Tax=Tribolium castaneum TaxID=7070 RepID=D6WL17_TRICA)

HSP 1 Score: 72.0 bits (175), Expect = 6.760e-11
Identity = 42/79 (53.16%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  244 RLSFGCSNLDAAFEGGVRVQGITE--AKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPSRRLRQIAATF 474
            R+S GCS +DA   GG+ V  I+E    AG GKTQLCLQL L AQL    GGLG KS V  C E  FP +RL+ +A T+
Sbjct:   73 RISTGCSAIDAITRGGIAVNRISEIVGYAGVGKTQLCLQLSLMAQLPISLGGLG-KSVVYLCTEDAFPIKRLKDLAITY 150          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5074.13104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGE7_ECTSI1.140e-7971.35RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KY82_9PHAE8.130e-7770.83RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3F398_9EUKA1.890e-1341.35Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A2G8LRK6_STIJA5.330e-1354.12Putative DNA repair protein n=1 Tax=Stichopus japo... [more]
A0A537F041_9ARCH4.690e-1235.00DNA repair and recombination protein RadA n=4 Tax=... [more]
UPI001EE627211.020e-1146.60DNA repair protein XRCC3-like isoform X1 n=4 Tax=H... [more]
A0A0M0LPY7_9EUKA1.740e-1151.11DNA repair protein xrcc3 n=1 Tax=Chrysochromulina ... [more]
A0A7M7GGZ6_STRPU2.010e-1150.60RECA_2 domain-containing protein n=1 Tax=Strongylo... [more]
A0A1Q3AVJ9_CEPFO6.090e-1134.06Rad51 domain-containing protein n=1 Tax=Cephalotus... [more]
D6WL17_TRICA6.760e-1153.16Spindle B n=3 Tax=Tribolium castaneum TaxID=7070 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5074contigL-elsbetiae_contig5074:9758..13233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.8
Seed ortholog evalue7.3e-65
Seed eggNOG ortholog2880.D8LGE7
Preferred nameXRCC3
KEGG koko:K10880
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042148,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.meiotic DNA recombinase assembly
EggNOG OGsCOG0468@1,KOG1564@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Ec32 ortholog descriptionDNA recombination and repair protein Rad51, C-terminal
Ec32 orthologEc-16_003770.1
Exons5
Model size834
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5074.13104.1prot_L-elsbetiae_contig5074.13104.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5074 9758..13071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.6332064-CDS-L-elsbetiae_contig5074:9757..98571622816514.6332064-CDS-L-elsbetiae_contig5074:9757..9857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 9758..9857 +
1691683615.047005-CDS-L-elsbetiae_contig5074:9757..98571691683615.047005-CDS-L-elsbetiae_contig5074:9757..9857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 9758..9857 +
1622816514.6471763-CDS-L-elsbetiae_contig5074:10872..110911622816514.6471763-CDS-L-elsbetiae_contig5074:10872..11091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 10873..11091 +
1691683615.0628307-CDS-L-elsbetiae_contig5074:10872..110911691683615.0628307-CDS-L-elsbetiae_contig5074:10872..11091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 10873..11091 +
1622816514.6575508-CDS-L-elsbetiae_contig5074:11668..117151622816514.6575508-CDS-L-elsbetiae_contig5074:11668..11715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 11669..11715 +
1691683615.0717797-CDS-L-elsbetiae_contig5074:11668..117151691683615.0717797-CDS-L-elsbetiae_contig5074:11668..11715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 11669..11715 +
1622816514.675148-CDS-L-elsbetiae_contig5074:12259..123701622816514.675148-CDS-L-elsbetiae_contig5074:12259..12370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 12260..12370 +
1691683615.0807545-CDS-L-elsbetiae_contig5074:12259..123701691683615.0807545-CDS-L-elsbetiae_contig5074:12259..12370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 12260..12370 +
1622816514.6873872-CDS-L-elsbetiae_contig5074:12876..130711622816514.6873872-CDS-L-elsbetiae_contig5074:12876..13071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 12877..13071 +
1691683615.0904298-CDS-L-elsbetiae_contig5074:12876..130711691683615.0904298-CDS-L-elsbetiae_contig5074:12876..13071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5074 12877..13071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816514.697919-UTR-L-elsbetiae_contig5074:13071..132331622816514.697919-UTR-L-elsbetiae_contig5074:13071..13233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5074 13072..13233 +
1691683615.098429-UTR-L-elsbetiae_contig5074:13071..132331691683615.098429-UTR-L-elsbetiae_contig5074:13071..13233Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5074 13072..13233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5074.13104.1

>prot_L-elsbetiae_contig5074.13104.1 ID=prot_L-elsbetiae_contig5074.13104.1|Name=mRNA_L-elsbetiae_contig5074.13104.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=224bp
MASRPRMSGVGIGGVGCPPGTQFGGSRRQQSSHGHQQQRPQQQQQQQRSG
GKGGKPDPWLAGTAPPCTTALAMSRDAARLRRLSFGCSNLDAAFEGGVRV
QGITEAKAGAGKTQLCLQLLLQAQLATEEGGLGGKSYVLTCGEGDFPSRR
LRQIAATFQRRHGVRPEKLMEGVCIQNAKNLDEQMMIIVSAFLVAQQLRS
NLPMYTCIYQGVWREGLKHSMPS*
back to top

mRNA from alignment at L-elsbetiae_contig5074:9758..13233+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5074.13104.1 ID=mRNA_L-elsbetiae_contig5074.13104.1|Name=mRNA_L-elsbetiae_contig5074.13104.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3476bp|location=Sequence derived from alignment at L-elsbetiae_contig5074:9758..13233+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCTCGCCCGCGCATGTCAGGTGTAGGTATTGGTGGGGTGGGTTG TCCACCGGGAACGCAGTTCGGAGGAAGCCGGCGGCAGCAGTCTTCGCACG GTGCGTGTTTTCAAATTTGAAAAAATGTGCCAGTTTGGTTACACCCTCCT CCTTGCGTCCGTTGCAGGCAGGGGAGAGCAGCGGCAACAACGCGCAGGGT TGGCCTCGGAGCAAGCATTGTCGGCGGGCGCTCCAGCACGAAATGATATG AGTGTTTCCCACGACGAGTGTCCCGTTTTCTTGCCCAGATCGTGCATGTG TAGACGTGTAGACCTTGCGGTCACAGTATATAAAGTCAGCGCACGCATGT TGAGGAGACTTGGCTGCTACGTGGCTGCTCGCCACCAGTATCATGGGCTT TGCATCGAATTCACGTCCAGCATGTGAAAACTGATAGTCACGCACTGGTT AAATAGGTTATCGATCACTGGGTAAATGGCTGCTCCGTCTCTCATGACAA CTCTCATCGTTCTCTGCCGTGTGTTATGTATAGACTAGATAGATGTAAGC AGTCGCAACACACAACGAATAAGTAAACCGGTTTTCTGCTGTTGCACGCG CGGTGTTGTGTCGAGAACCAATTCATATTGTACACGCCGTTCAAAAACGT GCTCGGGAGTTGAATCGTTGAACACCTTGCTCGTAACTAAGTTCTACTGT AACTACCGACAGGTTCGGCCGGCGGTGGTGGAGGGACTGCCGTTCTTTGC TTCCATCAGCTTGAGCAATCCCACAGACAGCATGTGTGGCACAGATACTC GCCACGCCCACGTACATTTTTATCACAAATCTCTGCCATATCTATGTACT GTGGGTGACACAAGATACCACACCCCCTGGACATATTTTCAAAGCTCGAT TCCTCCCCAGCAAGAAGAGTGTCAATGCCGAAAGGGGTGGCGTTGGAAAT ATCTAGTCGAGGGCTGTCCGAAAACGTGTCGTTTGGTGCTGGCACCCTCT TCGTTGCGGAGTAATTGAGCTCTAAAATTCGGTCAAGGGGGTGTGGTATC TCGTGTCACCTACGGTATATACTGATCGGTTCCATCGATGCTCCTTCCCA AACGGTGCTATTCAGGGCACCAGCAGCAGCGCCCGCAGCAACAGCAGCAG CAGCAGCGCTCGGGAGGGAAAGGAGGCAAGCCCGACCCGTGGCTCGCCGG GACCGCCCCGCCGTGCACGACCGCGCTGGCCATGTCGAGGGACGCGGCCA GGCTGCGCAGGCTCTCGTTCGGGTGCTCGAACCTCGACGCCGCTTTCGAA GGAGGCGTTCGGGTTCAGGGCATCACGGAGGCGAGTTATTACACACAGGG GAGCGGGCTGTCTGCTCCCAATCAGATTGGGGCAAAAACGATCGGCTGAT TCGTGGAATAAAATCGATAGGACGTTTCAGTCTGAGGTTCTGGAATTCTG GGCATCTGCACCCAGTCAGACTGTCGGGCAAATCCCGCCGCTATTATCAG CCTTTCGCCGGGGAGGGCAAACTTTGGGCGGTGGCAGACAGCACAGCTTC TGCCGTCGTGTAGAACATGGGGGTATATGTAGGGTCAGATCTTTTTAGTC TCGATCCTAGACCGATGCCCCCCCCCCCGAACGTGCACGTGGTATCGCGA TGAATAGGGCCAGTGTAGNNNNNNNNNNGGGTCGCCTGGGTGAGAGACAG AGGGGTTTTCGTGGGGGCGGATCTTTTTTGTTTCCACCCCCCCCCCCCCC CCCCCCCCCCCAAACACAGTGTGTGTCTGCGCGTTGCGAGCGAGACGTCT GTGTATTCCATCCCCGCCCCGGGGAGCTAATAACTAACGCGTTTGCTTTT GCTGCTACAATTACCCCCCAATGTGTGGTGTGTTTGTTTGTGCGGATACA GATCGCTGGAGAGGCGGGAGCGGGAAAGACGCAGCTGTGTCTTCAGCTGC TTCTTCAGGTGTGGACGTATGTATTGAAGTGATGAACGCATCTTGCGCGG CGCTTAATTAAAGCAGCGTGGTTGGTTGAAAAAGTAGGCGTGGTACAGCT GTCGAGAGACAAAGCTGTCGCGCCGTTTTGTGTGAAAACCTGTGTGCATG CTCGCCGTGGGGCGCTCAAGGAGGAAATGGCTGGCGAAGAAGTTGCATGT TCATTTCACAACTCCAGCCATACGGGCTCAGAAAGCAGTTTCCTGCGTTT CGTTCGGGAGGCGTTTTGTGTTTCTTTGGGGGGGTACGGTATCTACGATA TGTAGGGGTTTGGGGCTCGAGTGTCCCTGCCTCTTGAGCACGCCGGGAAT GCGACCGGCTAGGGGGGGATCCGTATGATCGATATGTATGCAGAGAGGCT TTGAAGGGAGTAGTAGTCTAAGGGGATCCGCGGCTTGCGCCATCAAGCGT AGGGTGCTGCAGCATATGTCGCACCCGACGAATCAGGACCCGCGTTGACC TTTCCCGCCTCGTCTTGTCTTCTTGTGCGGTATAAACTACACACGTACCC AGGCCCAGCTAGCGACTGAGGAGGGAGGTCTCGGCGGCAAGTCCTACGTG CTCACGTGCGGGGAGGGGGACTTCCCCAGCCGAAGGCTGAGGCAGATCGC GGCAACCTTCCAGGTGCGGCGCAAGTGCGATCGAGGAAACACACGCACAG CTGCAAAAGTAGAAAGCATTCTGGAGTAGGAGTAGGCAGAGGAGTGGAGT AGCAGCAGCAGCAGCCGCAAAAACAGCACTGGCTTGCAGGTGTAGTCGAA GGTTTTGGAGGGAGAGGATAGAAGAAGAGGAGAGAGGGAGGAGCGGAGCA GTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAAGGCAGTACTGCAG GTGCAGAACATGTTAACAATACCAAATCCGCCTGCTTGTTAACAACGTCG TGACGAGGGTTTCCGTGCAGATGGGACGCCTTTAAACGCTCGCAGCTCTC TTGCCTTGTCTTTGTCTTGCCAACGAAGAGCGGTCGAGTTCGTGCGTCCC GCGAGTTTTCATTGTCAAGATTGGGTTTTCCAAACACACACAACACAACG CACGACACATCTCGTACCCTCCCCTGATCGGTTCTTGTCGGTGCCCCCTG TGACGTTCACTCGGCGCAGAGACGCCACGGCGTGCGGCCAGAGAAGCTGA TGGAGGGCGTGTGCATCCAGAACGCCAAGAATCTCGACGAGCAGATGATG ATCATCGTGAGTGCTTTTTTGGTGGCACAGCAGCTGAGAAGTAACCTGCC TATGTACACGTGTATCTACCAAGGTGTATGGCGTGAAGGTCTCAAACATT CGATGCCTTCTTGACAGGTGTGACAGGTGTGTTGTACGTACGTACATACA TACTATTGTCGAAACCCCCGTGAACTTGGTCTGTCTGTGTTCCAGTGTTG TCACGCTCGGGGGGCCGGCAGATATTTACCTGCTTCGGGGGGTCGGCAGA TGTACCACGGTTTGCAGAACTCCTCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5074:9758..13233+

>mRNA_L-elsbetiae_contig5074.13104.1 ID=mRNA_L-elsbetiae_contig5074.13104.1|Name=mRNA_L-elsbetiae_contig5074.13104.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig5074:9758..13233+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGTCTCGCCCGCGCATGTCAGGTGTAGGTATTGGTGGGGTGGGTTG
TCCACCGGGAACGCAGTTCGGAGGAAGCCGGCGGCAGCAGTCTTCGCACG
ATGGCGTCTCGCCCGCGCATGTCAGGTGTAGGTATTGGTGGGGTGGGTTG
TCCACCGGGAACGCAGTTCGGAGGAAGCCGGCGGCAGCAGTCTTCGCACG
GGCACCAGCAGCAGCGCCCGCAGCAACAGCAGCAGCAGCAGCGCTCGGGA
GGGAAAGGAGGCAAGCCCGACCCGTGGCTCGCCGGGACCGCCCCGCCGTG
CACGACCGCGCTGGCCATGTCGAGGGACGCGGCCAGGCTGCGCAGGCTCT
CGTTCGGGTGCTCGAACCTCGACGCCGCTTTCGAAGGAGGCGTTCGGGTT
CAGGGCATCACGGAGGCGAGGCACCAGCAGCAGCGCCCGCAGCAACAGCA
GCAGCAGCAGCGCTCGGGAGGGAAAGGAGGCAAGCCCGACCCGTGGCTCG
CCGGGACCGCCCCGCCGTGCACGACCGCGCTGGCCATGTCGAGGGACGCG
GCCAGGCTGCGCAGGCTCTCGTTCGGGTGCTCGAACCTCGACGCCGCTTT
CGAAGGAGGCGTTCGGGTTCAGGGCATCACGGAGGCGAAGGCGGGAGCGG
GAAAGACGCAGCTGTGTCTTCAGCTGCTTCTTCAGAGGCGGGAGCGGGAA
AGACGCAGCTGTGTCTTCAGCTGCTTCTTCAGGCCCAGCTAGCGACTGAG
GAGGGAGGTCTCGGCGGCAAGTCCTACGTGCTCACGTGCGGGGAGGGGGA
CTTCCCCAGCCGAAGGCTGAGGCAGATCGCGGCAACCTTCCAGGCCCAGC
TAGCGACTGAGGAGGGAGGTCTCGGCGGCAAGTCCTACGTGCTCACGTGC
GGGGAGGGGGACTTCCCCAGCCGAAGGCTGAGGCAGATCGCGGCAACCTT
CCAGAGACGCCACGGCGTGCGGCCAGAGAAGCTGATGGAGGGCGTGTGCA
TCCAGAACGCCAAGAATCTCGACGAGCAGATGATGATCATCGTGAGTGCT
TTTTTGGTGGCACAGCAGCTGAGAAGTAACCTGCCTATGTACACGTGTAT
CTACCAAGGTGTATGGCGTGAAGGTCTCAAACATTCGATGCCTTCTTGAA
GACGCCACGGCGTGCGGCCAGAGAAGCTGATGGAGGGCGTGTGCATCCAG
AACGCCAAGAATCTCGACGAGCAGATGATGATCATCGTGAGTGCTTTTTT
GGTGGCACAGCAGCTGAGAAGTAACCTGCCTATGTACACGTGTATCTACC
AAGGTGTATGGCGTGAAGGTCTCAAACATTCGATGCCTTCTTGA
back to top