mRNA_L-elsbetiae_contig506.13092.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig506.13092.1
Unique NamemRNA_L-elsbetiae_contig506.13092.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig506.13092.1 vs. uniprot
Match: D7G2I8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I8_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 1.160e-83
Identity = 143/163 (87.73%), Postives = 151/163 (92.64%), Query Frame = 1 
Query:  205 MEQVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDINDPEAVKWARKNAKIAQSAVEKSTDQVRGAMRQAPRWQTLSRDYRFWLGLVVTLSLVSSIISASGRSQDLVVWHDALGSEEFGEALFAHASLLAAATAHSAGDAASQLAETASAGAALVFA 693
            ME VNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKD+NDPEAVKWARKNAKIAQSA+E  T QVRGAMR+APRWQTLSRDYRFWLGLVV LSLVSS+ISASGRS DLVVW+D LGSE FGEALFAHA+LLAA TAHSAGDAA+QLAET   GAA+VFA
Sbjct:    1 MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAMEDRTKQVRGAMRKAPRWQTLSRDYRFWLGLVVALSLVSSVISASGRSHDLVVWNDVLGSEPFGEALFAHAALLAATTAHSAGDAATQLAET---GAAMVFA 160
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig506.13092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2I8_ECTSI1.160e-8387.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig506contigL-elsbetiae_contig506:25878..30580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001680.1
Exons4
Model size1578
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig506.13092.1prot_L-elsbetiae_contig506.13092.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig506 25908..29698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816512.8127518-UTR-L-elsbetiae_contig506:25877..259071622816512.8127518-UTR-L-elsbetiae_contig506:25877..25907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig506 25878..25907 +
1691683613.6243434-UTR-L-elsbetiae_contig506:25877..259071691683613.6243434-UTR-L-elsbetiae_contig506:25877..25907Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig506 25878..25907 +
1622816512.8758714-UTR-L-elsbetiae_contig506:29698..305801622816512.8758714-UTR-L-elsbetiae_contig506:29698..30580Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig506 29699..30580 +
1691683613.677173-UTR-L-elsbetiae_contig506:29698..305801691683613.677173-UTR-L-elsbetiae_contig506:29698..30580Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig506 29699..30580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816512.8262103-CDS-L-elsbetiae_contig506:25907..260461622816512.8262103-CDS-L-elsbetiae_contig506:25907..26046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 25908..26046 +
1691683613.6349275-CDS-L-elsbetiae_contig506:25907..260461691683613.6349275-CDS-L-elsbetiae_contig506:25907..26046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 25908..26046 +
1622816512.838016-CDS-L-elsbetiae_contig506:26332..264061622816512.838016-CDS-L-elsbetiae_contig506:26332..26406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 26333..26406 +
1691683613.6444957-CDS-L-elsbetiae_contig506:26332..264061691683613.6444957-CDS-L-elsbetiae_contig506:26332..26406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 26333..26406 +
1622816512.8508432-CDS-L-elsbetiae_contig506:27810..279751622816512.8508432-CDS-L-elsbetiae_contig506:27810..27975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 27811..27975 +
1691683613.6560128-CDS-L-elsbetiae_contig506:27810..279751691683613.6560128-CDS-L-elsbetiae_contig506:27810..27975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 27811..27975 +
1622816512.862096-CDS-L-elsbetiae_contig506:29410..296981622816512.862096-CDS-L-elsbetiae_contig506:29410..29698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 29411..29698 +
1691683613.6669264-CDS-L-elsbetiae_contig506:29410..296981691683613.6669264-CDS-L-elsbetiae_contig506:29410..29698Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig506 29411..29698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig506.13092.1

>prot_L-elsbetiae_contig506.13092.1 ID=prot_L-elsbetiae_contig506.13092.1|Name=mRNA_L-elsbetiae_contig506.13092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
MVSLRFSLLCAGAFAASGANAFGVLQSRGLVVSSQATFSARSVAPKGRSS
SGSRRSLSMEQVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDI
NDPEAVKWARKNAKIAQSAVEKSTDQVRGAMRQAPRWQTLSRDYRFWLGL
VVTLSLVSSIISASGRSQDLVVWHDALGSEEFGEALFAHASLLAAATAHS
AGDAASQLAETASAGAALVFA*
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mRNA from alignment at L-elsbetiae_contig506:25878..30580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig506.13092.1 ID=mRNA_L-elsbetiae_contig506.13092.1|Name=mRNA_L-elsbetiae_contig506.13092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4703bp|location=Sequence derived from alignment at L-elsbetiae_contig506:25878..30580+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGCCCCTTGCTCGAATCGTCTGGCTAAAATGGTTTCTCTTCGCTTTAG
TCTACTGTGCGCGGGGGCTTTTGCTGCCTCCGGGGCGAACGCTTTCGGTG
TGCTCCAGAGCAGAGGTTTGGTCGTGTCATCCCAAGCAACCTTCTCAGCT
CGGTCTGTTGCTCCTAAGGGTGAGACAACGCCTGGGGCAAGCCACACCCC
ACCATCGTGTGCAAATCCGCCCTGGAATGTACTCGTGCGTCGCTCATCTC
GGGGGCGGTTTGTGGCTGTTTCGCCTGTCGTCACTGAAGTCGACGCATCG
TGTCTCGTTCATCGAAACGCCACGTCTGTTTTCAGAAATAAGCAGATCTC
GCTGACCCAGAGAGACAAACGGGCAACAAGGCGCACTTCGCAGGCAGTCG
CGACACCCAATCCCGACAACGTCCAACTCTCTTCCCGTTCTGTTGCTTTG
CACAGGGCGTTCATCTTCTGGATCACGTCGCTCGCTTTCGATGGAGCAGG
TCAATCCCCGCGAGGACGCAGACTTCGAGGTGTGTTTTTTTGAACTTTGG
GAGTAAAAAAAACACCGCGCCTGCCCCCCGCGCACAGCCCACAGCGAGCT
GCGTACGTTTGAATCGCCAAGCAACACTAGCGCCTGTCTCTACCCGCCCA
GGTGTTTCCTCAAGCTGGTTCCCGTCAGAGATTCTGGACCATTTTTCGTT
TTTTGAGTGGTACACCGAGTCGTTGACTCTCTTTCCCGCAGTTCAAGTTG
GCCGGCCTGGAAAAGAGAGAGTGGAACTTCCTTCCGACCTGTGTGTACGG
GAAGAGGCCGACGCGCACAGTTCTCTTTGGCTCCTCGCCAATTCCATCTG
CTCCCCTCGCCTTGCAAATTGTGCCCAGCGCATTGAAGACGAGGAGAACC
AGCGAACTTATTTCAGGCGCCCGCATTTTTTTGGTAGAAATGTATGTCTT
GTAGCGTTTTCCCGATATTATTTTATCAGCATATATATTACCACCGCTAC
ATCCTGCTGTATACCTAATACAGATCTTGCTGCTGGGGTCTGCAGCGTCC
ACATGATCCAGTCTTCTCGGGGCACACCAGAGATGTGCATACCAAGTAGG
CACCGCAGGAAGGGGTCCACCCTCCCTCCCCTCCTGTGTGACCCCGGTTG
GGTTGTCTAGCTAGTCGTAGTGGAGGATGGGGACCAGTGGGGCAGACGAC
GAATAAATAAGCCAATACTCACACTCGTATTTTTTGCCCGCTGCTGAAAG
GGCTATTCATTACCTGGAGGACTCAAGATTTAGCATAGTAATGGTGCTGT
TCCTATGTAGTGAGACTTCACAGCGTTATTGATTTGAAACCCAGGTCTGC
CACCACACCTTCAAAAACGCGGCAGCCTCCGGAGAGGTTTAATCTACCGC
AGTGCAGTACTCTGGTGTCGGTCGGCTTGAGGCGCGGTGTGGATCCCTGC
ACTGCCTGCAGAGAGTGCGTCACCAAGCCATGCCAACAGCTCAGCAAGAA
CGGGATACCTCTGACCTGAAAATCGAAGCACTTTTCACGAGCATTCAATC
AAATGTATCCGTTGGTCTCGTGTTCCCACCGCAACTTACATAATACACCG
GTGTACCAGTGTACACCAACTACAAGGACATAAATTCCGAAACATTTAGT
TCCGTGTGGTAGTAATTGTTTTGTTATTATAACATTATAACTGCTGTTGA
TTTTCCGTGCAAAGTGCGAGTTGTAGCGAAAAGCTGCACCCCCCCCCCCC
CGTCCTTCTCGTTTTGTTCAGATCGACGGTACACATACAGCAGTAGACAA
GACCCCCCAAGGAGCGCGCAATGAATTCTCTCCAAAAATACGCGTCCCAT
TTAGATCGCTCTCTTGACGCGATTCCGCCCTTGCCCGCCTCCGGGTCTTC
TTCGCCTGTGTTATGACAATCATATGTACTCAGATGACGGTGGACTGGGA
CGAGGAACTGCGCAAACTGAACGCGAGCCAGTACGGGAAGCGGCAGGAGC
GCGACTTGACGAAGGACATCAACGACCCGGAGGCCGTCAAGTGGGCGAGG
AAGAACGCGAAGATCGCCCAGTCGGCCGTAGAGAAGAGCACTGACCAGGT
GAGGCGAAAGCGTGTGTGTGACCCATTTGATTCTGTTCCTGAGACGTACA
TCGAACGAACGGGTCGAACGAGCGGGACGCGCACGTTGCGAGAGTTCGAG
GCTCGGGACAAACGACTGTCATATGCGAGAGAGTGCGAGAGAGGAGCGAG
AGGCCGCTTTTTGCCGGGCCGGCCTCGTGTTGTGTTCTATACATATGTAT
ATTTGGCGTGGAACGTCGGAAGTTTATGCTGGGCTACATATATATCAAAG
GAGAATTGGCAAATCCAATTGACTACTTACTCACTCACTCACTCGGTCTG
TCAGCTTTTGCGCCCACGACGCCTTTCTCCTCGCGACTTACCCCGCGCGG
CATCATCCACGTGAAATGCGCTGACATATCGGAGTGCATCTAGTGTTATT
GGAACTAAATTCCAAGGGGGCACATTCTGTCACGACCAAAGGCACAGGGC
CTCAGTATACCCACGAATGAAGAAGCCGATATCTCAGCTTGCAGGAAGTG
ATCCAATACGCGACTTTGAGGCTTTGTAGTAGAGATGTGTGGCTACAGAG
CGGGCCAAAATTCTAGGTGGTAGCTTCTGTTTGGCATTTAGAGGTGCCAT
CGCAAGAAAATGATAGGGAAGAGAGACGTAGAGTCGAAAAAAGAGAGCCA
GCTGCGAGACAGACGGGCACGATTCCTATACGAAACGCAGCTTCTTGATC
CCTGAAGAGATCCATCGCAAGACCGCGCACGTCGGCAAGAAGAGGGTCTC
AGATGTGCAGAACACCCACTGAAATGAGCTATATCGTTGCATGGCAATTA
GACGAGCTGCTGCCGTCTGCTGCTGCTGGCCTGGCCGAGGGCACCAACGT
GTGCGGGAGGGCAGCTCTGACTCGACACTCACAGAGCGGTTCTGAGCTTA
AAATCTGCACCGGCACTAGCTATGAGCAACATATCGCACCCCCTCTAGTT
TTTTTGGTCTGGGATGGGTTATGTGAGCTCCTAGGGCTGGCGCAGTGGTG
TCAGCGAGGCCATAAGAGCGCGGGGGCTTTTGGTGGGGGGGTCTTTAATG
CGCTTGCTTTTTGTCTGCGAGTCCCCGACGAACTTGTGATCGGTGTAAAT
CATCCTCACGCCGCGGCTAGAGCATCGATTCGCTTCGTTCTTTTTCCTAC
ACCCTCGAGAAGTACAAGAGCTACAGACCTGTTCTTTCCCCACCACCAAC
ACGACACTCTGCGGCGAGAACTCGAAGTAAAGGAGCGCAACAAGTGCCCC
CTCAAAATCTAATCCAAATAACACTGGCATCTGAACGCTGCGCAAGCAGG
GGGATGCTTCAAAGTTGAGCACCACTGCAGCCCGATCCCACCACCGGTAG
TACATACACACCTAGCACACAGCCTTCACCTCACGTCGCCCCCCAACACA
TCCCTGCATCGCCCTTGATTCCGTTTGAGTCAGGTCCGGGGCGCGATGCG
TCAGGCCCCCCGCTGGCAGACCCTGTCCCGCGACTACAGGTTCTGGTTAG
GCCTGGTGGTGACGCTGAGCTTGGTGTCGTCGATCATCAGCGCGTCGGGT
CGATCCCAAGACCTCGTGGTCTGGCACGACGCCCTCGGCAGCGAGGAGTT
CGGGGAGGCGCTGTTCGCGCACGCCTCCTTGTTGGCCGCGGCGACCGCGC
ACTCCGCCGGCGATGCGGCGTCCCAGCTGGCGGAAACTGCCTCCGCCGGC
GCTGCTCTCGTGTTCGCGTGAGGAGGAGGAGGCACTGCTCGCTTGCGAAA
TGCTGGTGAAAGGCCCGGGGTCGCGGCGGTGGGAGAGAGAGGCGAACGGA
GCGCGCTGCGGCCACCGTTACGGGCGGTCGCGTGCTTTGACGGCCGTTGC
GTTGGTTGCCGAAAGGGATTGCGCGAAGTTCTGAGAGCGCTGGCGCCGGA
ATGGGTTGGCAAGACTTTCTCCTGGATCGGGTCGGAGTGGTGGAACGGTT
CCTGAGGCGCGAGGATTGCGTCGGAGTGTGATGATGCACCCAGGCGGCAA
CGCAAATTAACAAAATGAAGGCGTGTGCGCCGACACGTGGGTGCCGATAA
GGGTATTGGCTCCCCGATAAGGGTACAGAACCACGGGCGATGTGTTCTTC
TGCCCATTGTAAGTAGGGTACGTGGTCGCACGGTTGGCATAAATGTATTT
TGAGCTGGGACACTGGCACGACCGATTTTTCCCGCGCGGTTGGAGGTGGT
CACGTGTTTTCGGCGGCTCGGGGGGGGTATGGTTGTGTGTGTCGTCTTGG
CGGAGAGCAGCTTGTCAACAACGTGGTGGCAGGTGTGTGTGTGTCGTGAA
GGGCCAAGTGTTGGAGCGGGTTGCGAATGAAGTGGAAGTCGCCCGCTCGG
CCCGTGGTGGGTTAGCCCCCCCGGGCACCCGAAGAGTTGCAGCTGTACTT
CCCCACGCGGTTGGAGCAGGCAGCGGCGACGTAACCGCATCGTAGTGAAA
TGTATTTTGCCCGCGGGTGTACGGCATCCAGCTTCCAAGTTCCGGCCGGA
CTGCGGTCCCTCGCGCGGTTCGGAGAGGCTTCTGCCGCGGGAGTATGTCG
ACACGTGGCGGCTCGAGTGGAAGCGTGGGGGCAGAGAGTTCGCTCGTCGC
AGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig506:25878..30580+

>mRNA_L-elsbetiae_contig506.13092.1 ID=mRNA_L-elsbetiae_contig506.13092.1|Name=mRNA_L-elsbetiae_contig506.13092.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig506:25878..30580+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTCTCTTCGCTTTAGTCTACTGTGCGCGGGGGCTTTTGCTGCCTC
CGGGGCGAACGCTTTCGGTGTGCTCCAGAGCAGAGGTTTGGTCGTGTCAT
CCCAAGCAACCTTCTCAGCTCGGTCTGTTGCTCCTAAGGATGGTTTCTCT
TCGCTTTAGTCTACTGTGCGCGGGGGCTTTTGCTGCCTCCGGGGCGAACG
CTTTCGGTGTGCTCCAGAGCAGAGGTTTGGTCGTGTCATCCCAAGCAACC
TTCTCAGCTCGGTCTGTTGCTCCTAAGGGGCGTTCATCTTCTGGATCACG
TCGCTCGCTTTCGATGGAGCAGGTCAATCCCCGCGAGGACGCAGACTTCG
AGGGCGTTCATCTTCTGGATCACGTCGCTCGCTTTCGATGGAGCAGGTCA
ATCCCCGCGAGGACGCAGACTTCGAGATGACGGTGGACTGGGACGAGGAA
CTGCGCAAACTGAACGCGAGCCAGTACGGGAAGCGGCAGGAGCGCGACTT
GACGAAGGACATCAACGACCCGGAGGCCGTCAAGTGGGCGAGGAAGAACG
CGAAGATCGCCCAGTCGGCCGTAGAGAAGAGCACTGACCAGATGACGGTG
GACTGGGACGAGGAACTGCGCAAACTGAACGCGAGCCAGTACGGGAAGCG
GCAGGAGCGCGACTTGACGAAGGACATCAACGACCCGGAGGCCGTCAAGT
GGGCGAGGAAGAACGCGAAGATCGCCCAGTCGGCCGTAGAGAAGAGCACT
GACCAGGTCCGGGGCGCGATGCGTCAGGCCCCCCGCTGGCAGACCCTGTC
CCGCGACTACAGGTTCTGGTTAGGCCTGGTGGTGACGCTGAGCTTGGTGT
CGTCGATCATCAGCGCGTCGGGTCGATCCCAAGACCTCGTGGTCTGGCAC
GACGCCCTCGGCAGCGAGGAGTTCGGGGAGGCGCTGTTCGCGCACGCCTC
CTTGTTGGCCGCGGCGACCGCGCACTCCGCCGGCGATGCGGCGTCCCAGC
TGGCGGAAACTGCCTCCGCCGGCGCTGCTCTCGTGTTCGCGTGAGTCCGG
GGCGCGATGCGTCAGGCCCCCCGCTGGCAGACCCTGTCCCGCGACTACAG
GTTCTGGTTAGGCCTGGTGGTGACGCTGAGCTTGGTGTCGTCGATCATCA
GCGCGTCGGGTCGATCCCAAGACCTCGTGGTCTGGCACGACGCCCTCGGC
AGCGAGGAGTTCGGGGAGGCGCTGTTCGCGCACGCCTCCTTGTTGGCCGC
GGCGACCGCGCACTCCGCCGGCGATGCGGCGTCCCAGCTGGCGGAAACTG
CCTCCGCCGGCGCTGCTCTCGTGTTCGCGTGA
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