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Homology
BLAST of mRNA_L-elsbetiae_contig5037.13062.1 vs. uniprot
Match: D8LHT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT1_ECTSI) HSP 1 Score: 176 bits (447), Expect = 8.630e-52 Identity = 140/215 (65.12%), Postives = 150/215 (69.77%), Query Frame = 1
Query: 1 MEKFQRGGGELDLSQLEGGGGXXXXXXXXPAA-DGRRGDSVDSFAAEDGXXXXXXXXXXXXXXGEGGREKGLEDLLWGHETYESDGFDSSLEEQVEAMYDCLKADLSVSLEETRRGADAAAFGGAPTKSG-DRPWGSGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAGAAGEGRYLWGCTSPQEEREQLVSFVSLGCFDPSARLQ 639
ME+FQRGGGELDLSQL GG + G D V + AED XXXXXXXXXXXXXX GG+ KGL DLLWGHE YESDGFDSSLE+QVEAMY+CLKA L+VSLEE R GADAAAFG A K+G DRPWG+ XXXXXXXXXXXX EG G EG+YLWGCTSPQEEREQLVSF SLGCFDPSARLQ
Sbjct: 1 MERFQRGGGELDLSQLGGGSSNGDYERRLSVSIAGAAEDIVAGWEAEDXXXXXXXXXXXXXXXX-GGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYECLKAHLTVSLEENRGGADAAAFGAAAKKTGGDRPWGA--------ASGPQTIADVVXXXXXXXXXXXXEVPPSDEGDG---EGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQ 203
BLAST of mRNA_L-elsbetiae_contig5037.13062.1 vs. uniprot
Match: A0A6H5KVI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI4_9PHAE) HSP 1 Score: 175 bits (443), Expect = 1.820e-48 Identity = 135/215 (62.79%), Postives = 144/215 (66.98%), Query Frame = 1
Query: 1 MEKFQRGGGELDLSQLEGGGGXXXXXXXXPAA-DGRRGDSVDSFAAEDGXXXXXXXXXXXXXXGEGGREKGLEDLLWGHETYESDGFDSSLEEQVEAMYDCLKADLSVSLEETRRGADAAAFGGAPTKSG-DRPWGSGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGAGAAGEGRYLWGCTSPQEEREQLVSFVSLGCFDPSARLQ 639
ME+FQRGGGELDLSQL GG + G D + AED XXXXXXXXXXXXX E G+ KGL DLLWGHE YESDGFDSSLE+QVEAMYDCLKA L+VSLEE R GADAAAFG K+G DRPWG+ XXXXXXXXX EG G EG+YLWGCTSPQEEREQLVSF SLGCFDPSARLQ
Sbjct: 273 MERFQRGGGELDLSQLGGGSSNGDYERQISVSIAGAAEDIAAGWQAEDDEXXXXXXXXXXXXX-ESGKAKGLGDLLWGHEAYESDGFDSSLEDQVEAMYDCLKAHLTVSLEENRGGADAAAFGATAKKTGGDRPWGA--------ASGPKTIADVVAXXXXXXXXXGGEMPSSDEGDG---EGQYLWGCTSPQEEREQLVSFASLGCFDPSARLQ 475
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-18_000340.1 |
Exons | 3 |
Model size | 660 |
Cds size | 660 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816508.871425-CDS-L-elsbetiae_contig5037:10726..10813 | 1622816508.871425-CDS-L-elsbetiae_contig5037:10726..10813 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5037 10727..10813 + |
1691683610.727582-CDS-L-elsbetiae_contig5037:10726..10813 | 1691683610.727582-CDS-L-elsbetiae_contig5037:10726..10813 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5037 10727..10813 + |
1622816508.8822157-CDS-L-elsbetiae_contig5037:10900..11103 | 1622816508.8822157-CDS-L-elsbetiae_contig5037:10900..11103 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5037 10901..11103 + |
1691683610.7386932-CDS-L-elsbetiae_contig5037:10900..11103 | 1691683610.7386932-CDS-L-elsbetiae_contig5037:10900..11103 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5037 10901..11103 + |
1622816508.8945322-CDS-L-elsbetiae_contig5037:12167..12537 | 1622816508.8945322-CDS-L-elsbetiae_contig5037:12167..12537 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5037 12168..12537 + |
1691683610.7556708-CDS-L-elsbetiae_contig5037:12167..12537 | 1691683610.7556708-CDS-L-elsbetiae_contig5037:12167..12537 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5037 12168..12537 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5037.13062.1 >prot_L-elsbetiae_contig5037.13062.1 ID=prot_L-elsbetiae_contig5037.13062.1|Name=mRNA_L-elsbetiae_contig5037.13062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MEKFQRGGGELDLSQLEGGGGDGGGGGEGPAADGRRGDSVDSFAAEDGDE EEKEEEEEEDEEGEGGREKGLEDLLWGHETYESDGFDSSLEEQVEAMYDC LKADLSVSLEETRRGADAAAFGGAPTKSGDRPWGSGGTGGGGGGGGGGPN TIADVIAAAASAGGSPSAGGGGEGAGAAGEGRYLWGCTSPQEEREQLVSF VSLGCFDPSARLQVCSVCT* back to topmRNA from alignment at L-elsbetiae_contig5037:10727..12537+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5037.13062.1 ID=mRNA_L-elsbetiae_contig5037.13062.1|Name=mRNA_L-elsbetiae_contig5037.13062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1811bp|location=Sequence derived from alignment at L-elsbetiae_contig5037:10727..12537+ (Laminarionema elsbetiae ELsaHSoW15) ATGGAAAAGTTTCAGCGGGGCGGGGGCGAGTTAGATCTGAGCCAGCTGGA
GGGCGGCGGCGGCGACGGCGGGGGCGGCGGCGAGGGCGTTGCGGGGAATG
GAAAACCTCTATCCTCTGGTGCGGCAGCGGGCGGCATGGTGGGGAGCACG
GCCGCCAGAGGACGCTCGGGCAAGCCTGCTGCCGATGGCCGGCGTGGTGA
CAGCGTTGACTCTTTTGCGGCTGAGGATGGCGACGAGGAGGAGAAGGAGG
AAGAGGAGGAAGAGGACGAAGAGGGGGAGGGAGGGAGAGAAAAGGGGCTC
GAAGACTTGCTGTGGGGGCACGAAACGTACGAGAGTGATGGCTTCGACTC
CAGCCTCGAGGAACAGGTGGAAGCCATGTGAGTCGAACTCGCCGCACCCA
CCTTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCACCCCCACACTCACAACCCACACACCAATAAC
AAAAAGACAGGGCGAGTGGNNNNNNNNNNGGGAGTGTGTTCCCCCCCCCC
CCCAGGGAAAAGGTGGGCGGCAATTGTGTCGGCCCGCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCCGATCCCGCATTGACACGTACTAA
GTGACTAGCTCAACTCAGACGATATCTCAAGACTCTTATCGAAGGAGAAA
AGGCAGCGTGTGCTCGTGTTATCTACGCGCTGATTGTGCGTACTCGTTGT
TGTACCAGCCTGCACCCGCCGGAGGAGTGACTTATTTTGTCAGGTGTTAT
GTTGTGTTTGTCTGTTGTTTCTTTGCTTGTTTGTATTCTCGACCTGCGTC
GTGTCCTGTCCGAGCGTATTTTATTTTATTTTATTTTTTGTATCCCCTGT
TGGTGGGCGGTGTAATCGGGTGGAGGACTATGTAGACCTGTGCGGGCCTG
GCCGGCGAGAACCCGGAGCGGAACCCCCCGGCTTTGTTGGGGTACCAAGA
TAGTGGTGTTGGCTGTTCCAGTTTTGTTTTACCTCACATAGCGTGTAGAG
GGGAGCGAAGGGCTCCAGACTCGATATCTGTTTCATTATTGCTTTGCTGG
TCCTTCGGGTCCATTTTATTTTTCGTGTACCTTGGGCATAAGTTAGTTTG
TGACGACGGGAATTGACCGCATCAAGTGTTGGATTAGTACGCACATTAGA
GGTACTGGATGGACAGATCGGAACGGTTTTTAATGTGAAGACAACATAAA
TACATATTGCCAGTGCACCCACGGTCGGTTGCTCAACCTCCCCCCCCTCC
ATCCTTCCTCCCGCGCCCCCCCCGTCCTCCTCCCATACCGTCGAAATTTC
CTCCTATCGATAAAAAAACTGGAACGAACCCGAAACCCCCTCGAACGGCG
ACAAACGCACGACACACATCAATACTCCAAACCAACACCAGGTACGACTG
CCTGAAGGCAGACCTCAGCGTCAGCCTCGAGGAGACCCGGAGAGGGGCAG
ACGCCGCCGCGTTCGGCGGCGCCCCGACTAAAAGCGGCGACCGGCCGTGG
GGGTCCGGCGGGACCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCCCGAA
CACCATCGCCGACGTGATTGCGGCCGCCGCCTCGGCCGGGGGAAGCCCCT
CCGCGGGCGGCGGCGGGGAGGGCGCGGGGGCGGCCGGGGAAGGGCGGTAC
TTGTGGGGGTGCACCTCGCCGCAAGAGGAGCGGGAGCAGCTGGTGTCGTT
CGTGTCGCTCGGGTGCTTCGACCCTAGCGCTCGCTTGCAGGTGTGTTCGG
TGTGTACGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5037:10727..12537+ >mRNA_L-elsbetiae_contig5037.13062.1 ID=mRNA_L-elsbetiae_contig5037.13062.1|Name=mRNA_L-elsbetiae_contig5037.13062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig5037:10727..12537+ (Laminarionema elsbetiae ELsaHSoW15) ATGGAAAAGTTTCAGCGGGGCGGGGGCGAGTTAGATCTGAGCCAGCTGGA GGGCGGCGGCGGCGACGGCGGGGGCGGCGGCGAGGGCATGGAAAAGTTTC AGCGGGGCGGGGGCGAGTTAGATCTGAGCCAGCTGGAGGGCGGCGGCGGC GACGGCGGGGGCGGCGGCGAGGGCCCTGCTGCCGATGGCCGGCGTGGTGA CAGCGTTGACTCTTTTGCGGCTGAGGATGGCGACGAGGAGGAGAAGGAGG AAGAGGAGGAAGAGGACGAAGAGGGGGAGGGAGGGAGAGAAAAGGGGCTC GAAGACTTGCTGTGGGGGCACGAAACGTACGAGAGTGATGGCTTCGACTC CAGCCTCGAGGAACAGGTGGAAGCCATCCTGCTGCCGATGGCCGGCGTGG TGACAGCGTTGACTCTTTTGCGGCTGAGGATGGCGACGAGGAGGAGAAGG AGGAAGAGGAGGAAGAGGACGAAGAGGGGGAGGGAGGGAGAGAAAAGGGG CTCGAAGACTTGCTGTGGGGGCACGAAACGTACGAGAGTGATGGCTTCGA CTCCAGCCTCGAGGAACAGGTGGAAGCCATGTACGACTGCCTGAAGGCAG ACCTCAGCGTCAGCCTCGAGGAGACCCGGAGAGGGGCAGACGCCGCCGCG TTCGGCGGCGCCCCGACTAAAAGCGGCGACCGGCCGTGGGGGTCCGGCGG GACCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGCCCGAACACCATCGCCG ACGTGATTGCGGCCGCCGCCTCGGCCGGGGGAAGCCCCTCCGCGGGCGGC GGCGGGGAGGGCGCGGGGGCGGCCGGGGAAGGGCGGTACTTGTGGGGGTG CACCTCGCCGCAAGAGGAGCGGGAGCAGCTGGTGTCGTTCGTGTCGCTCG GGTGCTTCGACCCTAGCGCTCGCTTGCAGGTGTGTTCGGTGTGTACGTAG GTACGACTGCCTGAAGGCAGACCTCAGCGTCAGCCTCGAGGAGACCCGGA GAGGGGCAGACGCCGCCGCGTTCGGCGGCGCCCCGACTAAAAGCGGCGAC CGGCCGTGGGGGTCCGGCGGGACCGGTGGCGGCGGTGGCGGCGGCGGCGG CGGCCCGAACACCATCGCCGACGTGATTGCGGCCGCCGCCTCGGCCGGGG GAAGCCCCTCCGCGGGCGGCGGCGGGGAGGGCGCGGGGGCGGCCGGGGAA GGGCGGTACTTGTGGGGGTGCACCTCGCCGCAAGAGGAGCGGGAGCAGCT GGTGTCGTTCGTGTCGCTCGGGTGCTTCGACCCTAGCGCTCGCTTGCAGG TGTGTTCGGTGTGTACGTAG back to top
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