mRNA_L-elsbetiae_contig5033.13056.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 364 bits (934), Expect = 2.260e-115 Identity = 221/394 (56.09%), Postives = 248/394 (62.94%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSAA-PAASSSSLRMSAGSDYVATLPGAPFGDGK-----------------------------------------------------------------IFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPL-------FMGKEF------IGPAIEHFQEITAQFPEFWAFALLG-MAFVEY---NTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 933 MVA+QMF+GTAATLIASS AFVAP+AVRS A SSSSL MSAGSDYVATLPGAPF DGK IFDPL +S+GA P DIKKWREAEIKHGRVAMLASLGV+VAE+ P F+ E+ IG +F + ++ +A ++ N +V P ++ GA PG+IK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP EA M+TKELNNGRLAMIGIAGML QEL+NPADILG Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSD--GAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 339 bits (869), Expect = 2.900e-108 Identity = 193/311 (62.06%), Postives = 206/311 (66.24%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSAAPAASSSSLRMSAGSDYVATLPGAPFGDGKIFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPLFMGKEFIGPAIEHFQEITAQFPEFWAFALLGMAFVEYNTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 933 MVATQ+FLG+AATLIASS AFVAPMAVRSAAPA+SSS+L+MSAGSDYVATLPGAPFGDGKIFDPLN+S+GA+P DIKKWREAEIKHGRVAMLASLGVLVAE+YHPLFMG PDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP+ EA M+TKELNNGRLAMIGIAGMLVQELINPADILG Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMG-------------------------------------------------------------------------------------------PDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 335 bits (859), Expect = 9.200e-107 Identity = 186/307 (60.59%), Postives = 204/307 (66.45%), Query Frame = 1 Query: 13 QMFLGTAATLIASSAAFVAPMAVRSAAPAASSSSLRMSAGSDYVATLPGAPFGDGKIFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPLFMGKEFIGPAIEHFQEITAQFPEFWAFALLGMAFVEYNTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 933 MFLGTAATLIASS AFVAPMAVRSAAPA+S+S+L+MSAGSDYVATLPGAPFGDGKIFDPL +S+GA EPGEIKLWREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAFIEYNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL +KPK +A MQTKELNNGRLAMIGIAGMLVQEL+NPADILG Sbjct: 6 NMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGA-------------------------------------------------------------------------------------------EPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 316 bits (809), Expect = 2.650e-99 Identity = 181/310 (58.39%), Postives = 201/310 (64.84%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSAAPAASSSSLRMSAGSDYVATLPGAPFGDGKIFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPLFMGKEFIGPAIEHFQEITAQFPEFWAFALLGMAFVEYNTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 930 MVA+QMFLGTAA LIASS AFVAP+AVRSAAPA+++S+L+MSAGSDYVATLPGAPF DGKIFDPL++S+GA P DIKKWREAEIKHGRVAMLASLG+LVAEEYHPLFMGK+FIGPAI HFQEI+AQFPEFWAF+LLGMAF+EYNTI+TAF +PSAVTGEGG LKEDY PGDLGFDPL +KP EA M+TKELNNGRLAMIGIAGML QEL+N DIL Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGG-------------------------------------------------------------------------------------------LKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 296 bits (759), Expect = 5.230e-92 Identity = 169/307 (55.05%), Postives = 195/307 (63.52%), Query Frame = 1 Query: 13 QMFLGTAATLIASSAAFVAPMAVRSAAPAASSSSLRMSAGSDYVATLPGAPFGDGKIFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPLFMGKEFIGPAIEHFQEITAQFPEFWAFALLGMAFVEYNTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 933 MFLGTAATLIASSAAFV PMAVRSAAPA+S+S+L+MSAG+DY+ATLPGA +GKIFD L +++GA +PGEIKLWREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI KAYA+PS VTGEGGL+++YSPGDLGFDP IKPK +A MQ KELNNGRLAMIGI GMLVQEL+N DILG Sbjct: 6 NMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGA-------------------------------------------------------------------------------------------DPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 262 bits (670), Expect = 2.840e-79 Identity = 128/168 (76.19%), Postives = 140/168 (83.33%), Query Frame = 1 Query: 430 NTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 933 N +V P ++ GA PG+IK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISAQ+PEFW FSLLGMAF+EYNTI A+ PS VTGEGGLKEDY PGDLGFDPL +KP EA M+TKELNNGRLAMIGIAGML QEL+NPADILG Sbjct: 31 NALVPQIFDPLGLSD--GAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 259 bits (662), Expect = 2.270e-78 Identity = 124/150 (82.67%), Postives = 136/150 (90.67%), Query Frame = 1 Query: 481 GAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 930 GAE G+IKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISA++PEFW FSLL +A IEYNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL +KP + TMQTKELNNGRLAMIGIAG LVQEL+NP +IL Sbjct: 25 GAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 249 bits (637), Expect = 1.590e-74 Identity = 157/311 (50.48%), Postives = 170/311 (54.66%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAVRSAAPAASSSSLRMSAGSDYVATLPGAPFGDGKIFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPLFMGKEFIGPAIEHFQEITAQFPEFWAFALLGMAFVEYNTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 933 MVA+QMF+GTAATLIASS AFVAPMAVRS SS L+MSAGSDYVATLPGAPF DGKIFDPL +S+GA P DIKKWREAEIKHGRVAMLASLGV+VAE FWAF+LLGMAF+EYNTI+TAF +PSAVTGEGG LKEDY PGDLGFDPL +KP EA M+TKELNNGRLAMIGIAGML QEL+NPADILG Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGG-------------------------------------------------------------------------------------------LKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 224 bits (571), Expect = 7.040e-64 Identity = 132/309 (42.72%), Postives = 169/309 (54.69%), Query Frame = 1 Query: 10 TQMFLGTAATLIASSAAFVAPMAVR-SAAPAASSSSLRMSAGSDYVATLPGAPFGDGKIFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPLFMGKEFIGPAIEHFQEITAQFPEFWAFALLGMAFVEYNTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 933 T +G A+ AS AF+ P SA P +S++ RMSAGSDYV+TLPGAPF DGK++DP+ +S A+P+DIKKWREAEIKHGRVAMLAS+GVLVAE +HPLF+G PDYIGPA+ HF+EI+A++P+FW +LL +A++EY I +A+ VTGEGG++ DY PGDLGFDPLG+ P+ E + M+TKELN+GRLAMIGI GM+VQEL+ P I G Sbjct: 56 TGALVGMASWCFASCEAFIVPTPTTLSARP--TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLG-------------------------------------------------------------------------------------------PDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 212 bits (539), Expect = 7.460e-60 Identity = 135/315 (42.86%), Postives = 171/315 (54.29%), Query Frame = 1 Query: 1 MVATQMFLGTAATLIASSAAFVAPMAV--RSAAPAASSSSLRMSAGSDYVATLPGAPFG---DGKIFDPLNMSEGANPKDIKKWREAEIKHGRVAMLASLGVLVAEEYHPLFMGKEFIGPAIEHFQEITAQFPEFWAFALLGMAFVEYNTIVTAFASPSAVTGEGGAEPGEIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIKPKTEADFVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 930 MV +Q+FLGTAATLIASSAAFVAP+A S A A+SS+ +M+AGSDY A+LPGAPFG +GK FDP ++ +P+ IKKWREAE+KHGRV+MLA++G+LV+E +HPLFMG P YIGPAV+H Q+I+ YP FWV SL +AFIE TI A+ S VTG G LK +Y PGDLGFDPLG+ PK DF +Q++EL+ GR AMIG+ GM+VQE+++ IL Sbjct: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMG-------------------------------------------------------------------------------------------PAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5033.13056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5033.13056.1 >prot_L-elsbetiae_contig5033.13056.1 ID=prot_L-elsbetiae_contig5033.13056.1|Name=mRNA_L-elsbetiae_contig5033.13056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=312bp MVATQMFLGTAATLIASSAAFVAPMAVRSAAPAASSSSLRMSAGSDYVATback to top mRNA from alignment at L-elsbetiae_contig5033:3184..12168- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5033.13056.1 ID=mRNA_L-elsbetiae_contig5033.13056.1|Name=mRNA_L-elsbetiae_contig5033.13056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8985bp|location=Sequence derived from alignment at L-elsbetiae_contig5033:3184..12168- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5033:3184..12168- >mRNA_L-elsbetiae_contig5033.13056.1 ID=mRNA_L-elsbetiae_contig5033.13056.1|Name=mRNA_L-elsbetiae_contig5033.13056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1872bp|location=Sequence derived from alignment at L-elsbetiae_contig5033:3184..12168- (Laminarionema elsbetiae ELsaHSoW15)back to top |