mRNA_L-elsbetiae_contig5031.13052.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5031.13052.1
Unique NamemRNA_L-elsbetiae_contig5031.13052.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5031.13052.1 vs. uniprot
Match: A0A484ECM3_BRELC (SPX domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ECM3_BRELC)

HSP 1 Score: 50.8 bits (120), Expect = 3.930e-5
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   88 EDVDEEEEKFKAALDSEVEKVVLFFLSKQGELAQQLLDAR 207
            E+   E+EKFK ALDSEVE+VVLFFL+KQGE A  L D R
Sbjct:   39 EETRNEQEKFKHALDSEVERVVLFFLTKQGEFATALQDLR 78
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5031.13052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A484ECM3_BRELC3.930e-567.50SPX domain-containing protein n=1 Tax=Bremia lactu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5031contigL-elsbetiae_contig5031:5791..7827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816508.110698-CDS-L-elsbetiae_contig5031:5790..59281622816508.110698-CDS-L-elsbetiae_contig5031:5790..5928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5031 5791..5928 +
1691683610.2303574-CDS-L-elsbetiae_contig5031:5790..59281691683610.2303574-CDS-L-elsbetiae_contig5031:5790..5928Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5031 5791..5928 +
1622816508.1244326-CDS-L-elsbetiae_contig5031:7665..78271622816508.1244326-CDS-L-elsbetiae_contig5031:7665..7827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5031 7666..7827 +
1691683610.2448072-CDS-L-elsbetiae_contig5031:7665..78271691683610.2448072-CDS-L-elsbetiae_contig5031:7665..7827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5031 7666..7827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5031.13052.1prot_L-elsbetiae_contig5031.13052.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5031 5791..7827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5031.13052.1

>prot_L-elsbetiae_contig5031.13052.1 ID=prot_L-elsbetiae_contig5031.13052.1|Name=mRNA_L-elsbetiae_contig5031.13052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
TSSLSEAGVAGSARSLRRRLTSRYSLSVGEDVDEEEEKFKAALDSEVEKV
VLFFLSKQGELAQQLLDARQAPVTPGHQGGGGGGGVAGAGGSFFIANGGG
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mRNA from alignment at L-elsbetiae_contig5031:5791..7827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5031.13052.1 ID=mRNA_L-elsbetiae_contig5031.13052.1|Name=mRNA_L-elsbetiae_contig5031.13052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2037bp|location=Sequence derived from alignment at L-elsbetiae_contig5031:5791..7827+ (Laminarionema elsbetiae ELsaHSoW15)
ACCAGTTCGTTGTCGGAGGCGGGAGTCGCCGGCAGCGCGAGGTCGCTGAG
GAGAAGGCTGACGAGCAGGTACTCGCTGTCGGTGGGGGAAGACGTGGACG
AGGAGGAGGAGAAGTTCAAGGCGGCACTCGATTCAGAGGTGTGTGTGTTG
TTGTTGCTGTTGTCTTCACGTTAAAAACCGTTCCGATCTCTCTATCCAGT
ACCCCTCCGTGAGTCCCGTATTAACCCAACACTGACGCGGTCGAATCCCG
TGGTCACAGGATAACTTATCCTGAACAGGGTGTACTGAAAAGAGAAAATA
AATACAAAATGACCCCGAAGGATCCACAAAGCGCAAAAAATAAAATAAAA
TAAAATAAAATAAAATAAAAATCACAGCAGTGATAAGTCTGGAACCCTCC
GCTCCCCTCTACAACTCATTTAACTTTTTCGTTTGGGCCAAGAAAACTCC
TTGGGCAATGAGCCTCTCTCAGGTCGTCATAAACTACCCGGAAAATTCCT
TGGGTGAAGCTGCCGGCAATCATGCCCACGTTGCCACGTTACAGGCTGTT
GGCTGTTGGCTGGCTGTTCAGGGGTTGAGCAACGTCACAGTGAAAATAAC
ACAGCTGTTGGGCTCTTCGGATTGAAAAAAATTATGCACATGGTGTACAT
ACGTACGCGGTAGTCTACGCAGGTTTTCAGTCAGCAAGACATATGGGATA
AAGTATGGAATCGGAGGAATGGGGGGGGGGTTGTGGTTAGGGTTAGGGTT
AGGGTTACGGAACCCCCTCACTCTATTTGACAAATGATATGAACCTGAAT
TTGACGATTTTATGCGCGTAGGCGGTCCTATATACGTCGGCAACAGAAAA
CAGTTATTTTTCGAAATGGTCTGCACCTCCGTGAGTGCAGAAGGAGCATA
TGTATGCAGCATTGACCCGAGGGGAGAGTGCGCATTGACCCCGAGAGATA
TGCATTCACCCGAAGAGGCACGTCGCACGAGGTAGCTGCTGCTGGGTCCG
GATCAACTGTTTAGCGTCCATCGGCTCGGGCAGCAGTCGACAGCCCATCG
CTTTGGCGCTCTGGTGGTGGCACGCGATGGCGCACACTCACACGCCAAAG
CCAAGCCATGCTCAGCCAAAGCCAAGCCATGCCCAGCCAAACCAAGCCAT
GCTCAACGGCGAAATACCCTTCGCGCTTTCTTCCTTCTTCCCGTGAACAA
AGGCCGACATTCCAAATTGTTGAGCATACGCAAACAGGCCGACATTTCGG
ACCGGCATTGACGACGTTGGTCGGGCAAATACGGTAAAACCCTCTGCCCC
CCCCCCCCCCACCCCTTTAGGCCAAAAAAACATGATTCTGGGGTTTTCTC
CCGCTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTCTT
CATATTAAAAACCTTCTCGATCTCTCTATCCAGTACCTCCGTGAGTCCGT
ATTAATCCAACACTGACGCAGTCGATTCCCCCCGTGATCCCAGGATAACT
TAACTTACCCTAAGAAGGGTGTACTGAAAAAGAGCAAATAACTAAAACGG
ATCCGAAGGGTCCACAGAGAACAAAAAAAAAAGATTAGACACAGATAGCC
TGAAAAGCCCTCCGCTCCCCTATACGTGCTATGCGAGGTGAAAAAAACAA
ACAAGGGTGGAAAAGCCAACATCACCAACCGGAGGTATAAGTACACCCCC
TGATTTTACTATAACAACCGGTACTTCTGTGTACCCCCCCCCCCCGGGTT
CTAATCCTGGTACTAAATTTACCCTAACAAACCGGCGTTGTGTGTGTAAT
TTGATGGTCTTTCTCTGTGTGTGTGTATTTTTTATTTACCCTCTATGTAC
ATGTGTATGTATGTTGAATGTTTAGGTGGAGAAGGTGGTGCTTTTTTTCC
TGTCCAAGCAAGGCGAGCTGGCGCAGCAGCTGCTCGATGCCAGACAGGCG
CCGGTAACGCCGGGCCATCAAGGCGGCGGCGGCGGCGGCGGCGTTGCGGG
TGCTGGTGGCAGTTTTTTTATCGCGAACGGAGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5031:5791..7827+

>mRNA_L-elsbetiae_contig5031.13052.1 ID=mRNA_L-elsbetiae_contig5031.13052.1|Name=mRNA_L-elsbetiae_contig5031.13052.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig5031:5791..7827+ (Laminarionema elsbetiae ELsaHSoW15)
ACCAGTTCGTTGTCGGAGGCGGGAGTCGCCGGCAGCGCGAGGTCGCTGAG
GAGAAGGCTGACGAGCAGGTACTCGCTGTCGGTGGGGGAAGACGTGGACG
AGGAGGAGGAGAAGTTCAAGGCGGCACTCGATTCAGAGACCAGTTCGTTG
TCGGAGGCGGGAGTCGCCGGCAGCGCGAGGTCGCTGAGGAGAAGGCTGAC
GAGCAGGTACTCGCTGTCGGTGGGGGAAGACGTGGACGAGGAGGAGGAGA
AGTTCAAGGCGGCACTCGATTCAGAGGTGGAGAAGGTGGTGCTTTTTTTC
CTGTCCAAGCAAGGCGAGCTGGCGCAGCAGCTGCTCGATGCCAGACAGGC
GCCGGTAACGCCGGGCCATCAAGGCGGCGGCGGCGGCGGCGGCGTTGCGG
GTGCTGGTGGCAGTTTTTTTATCGCGAACGGAGGAGGGGTGGAGAAGGTG
GTGCTTTTTTTCCTGTCCAAGCAAGGCGAGCTGGCGCAGCAGCTGCTCGA
TGCCAGACAGGCGCCGGTAACGCCGGGCCATCAAGGCGGCGGCGGCGGCG
GCGGCGTTGCGGGTGCTGGTGGCAGTTTTTTTATCGCGAACGGAGGAGGG
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