mRNA_L-elsbetiae_contig5023.13039.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5023.13039.1
Unique NamemRNA_L-elsbetiae_contig5023.13039.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5023.13039.1 vs. uniprot
Match: D8LSA3_ECTSI (PHD finger protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA3_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 2.630e-64
Identity = 127/157 (80.89%), Postives = 138/157 (87.90%), Query Frame = 1 
Query:    1 MSSIGMLDDRVQSISALIDTDIGEKKSRTKKGAQKSGTQPLTAAPEAEEEEGPVPDGWRTPEIRALEDQINSRVDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXXRQGLLPPREVAT--PSRKRRRTGAKKADEPESEWLGLSLSERV 465
            M+SIG LDDRVQSISALID+DIGEK SRTKKGA K+        P+A   EGPVPDGWRTPEIRALEDQINSR+DLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXX RQGL+PPREV+   PSRKRRR+GA+K DEP+S+WLGLSLSERV
Sbjct:    1 MTSIGQLDDRVQSISALIDSDIGEK-SRTKKGAPKT-------RPQARATEGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLIPPREVSATPPSRKRRRSGAEKTDEPDSDWLGLSLSERV 149
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BLAST of mRNA_L-elsbetiae_contig5023.13039.1 vs. uniprot
Match: A0A6H5L498_9PHAE (Inhibitor of growth protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L498_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 9.910e-58
Identity = 128/191 (67.02%), Postives = 139/191 (72.77%), Query Frame = 1 
Query:    1 MSSIGMLDDRVQSISALIDTDIGE-----------------------------------KKSRTKKGAQKSGTQPLTAAPEAEEEEGPVPDGWRTPEIRALEDQINSRVDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXXRQGLLPPREVAT--PSRKRRRTGAKKADEPESEWLGLSLSER 462
            M+SIG+LDDRVQSISALID+DIGE                                   KKSRTKKGA K+        P+A   +GPVPDGWRTPEIRALEDQINSR+DLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXX RQGLLPPREV+   PSRKRRR+GA+K DEPES+WLGLSLSER
Sbjct:   23 MTSIGLLDDRVQSISALIDSDIGEVARARQRYYAQFDSSNNSGDDDSGGESHPPRTGRAKKSRTKKGAPKT-------RPQARATKGPVPDGWRTPEIRALEDQINSRIDLVLRMADEKWRLAQHAYDRLDVNIRXXXXXXXXXXXXXRRQGLLPPREVSATPPSRKRRRSGAEKTDEPESDWLGLSLSER 206
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5023.13039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSA3_ECTSI2.630e-6480.89PHD finger protein-related n=1 Tax=Ectocarpus sili... [more]
A0A6H5L498_9PHAE9.910e-5867.02Inhibitor of growth protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5023contigL-elsbetiae_contig5023:1172..6598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionInhibitor of growth protein, N-terminal
Ec32 orthologEc-12_004260.1
Exons4
Model size495
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5023.13039.1prot_L-elsbetiae_contig5023.13039.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5023 1172..6598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816507.0813103-CDS-L-elsbetiae_contig5023:1171..13361622816507.0813103-CDS-L-elsbetiae_contig5023:1171..1336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 1172..1336 -
1691683609.551529-CDS-L-elsbetiae_contig5023:1171..13361691683609.551529-CDS-L-elsbetiae_contig5023:1171..1336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 1172..1336 -
1622816507.092933-CDS-L-elsbetiae_contig5023:1983..21121622816507.092933-CDS-L-elsbetiae_contig5023:1983..2112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 1984..2112 -
1691683609.5655758-CDS-L-elsbetiae_contig5023:1983..21121691683609.5655758-CDS-L-elsbetiae_contig5023:1983..2112Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 1984..2112 -
1622816507.1036248-CDS-L-elsbetiae_contig5023:5626..57551622816507.1036248-CDS-L-elsbetiae_contig5023:5626..5755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 5627..5755 -
1691683609.5778053-CDS-L-elsbetiae_contig5023:5626..57551691683609.5778053-CDS-L-elsbetiae_contig5023:5626..5755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 5627..5755 -
1622816507.1151395-CDS-L-elsbetiae_contig5023:6526..65981622816507.1151395-CDS-L-elsbetiae_contig5023:6526..6598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 6527..6598 -
1691683609.59104-CDS-L-elsbetiae_contig5023:6526..65981691683609.59104-CDS-L-elsbetiae_contig5023:6526..6598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5023 6527..6598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5023.13039.1

>prot_L-elsbetiae_contig5023.13039.1 ID=prot_L-elsbetiae_contig5023.13039.1|Name=mRNA_L-elsbetiae_contig5023.13039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MSSIGMLDDRVQSISALIDTDIGEKKSRTKKGAQKSGTQPLTAAPEAEEE
EGPVPDGWRTPEIRALEDQINSRVDLVLRMADEKWRLAQHAYDRLDVNIR
RLDADLGRMETDLRRQGLLPPREVATPSRKRRRTGAKKADEPESEWLGLS
LSERVREAQIYVHI*
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mRNA from alignment at L-elsbetiae_contig5023:1172..6598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5023.13039.1 ID=mRNA_L-elsbetiae_contig5023.13039.1|Name=mRNA_L-elsbetiae_contig5023.13039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5427bp|location=Sequence derived from alignment at L-elsbetiae_contig5023:1172..6598- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCTCGATCGGCATGCTCGACGACCGCGTCCAGTCTATCTCCGCGCT
GATCGACACAGACATCGGCGAGGTGGCCCGGGCGAGGCAGCGGTACTACG
CCCAGTTCGAAAGCACCGACGATCAAGGCTCGCCTCCTCGCATCAGAAAA
TCGAAGGTTGGAGACTCTTGCCTCCAGTTCTCTTTGTTCTTGACTCATCT
GCTTGTGTGTCTCCCTTTCACCATTTGTTTTTTTGAACGGGCTGCCTGTA
GCGAGAGGTCTTGGTCTATCAGAATATTTTCGCGTCTGCTCGTGCCGTTG
CTGTTGAACTGCTCCTTTTCCCCACCACCGTTCATTTGATTGCGGCGAGG
TTCTAGGCAAACGCCACAATACCGCACACGTGGCAGCGTGTCTTCGCCGG
ATTGTGATTCTGGCGTCCCTTGAGCAGGGCACACCAACGTCTTTTTATTT
TGAATTAAATATGACTTGGAAAATGATAACGCCTGTTTCATTCTATGTTT
AAGGATGTTTTCCACTAGGTAGGTAACTCGAAGCAGAAAGTACAGGACTA
GATAGATATCCATGCATGTATCATGTGTGTACCGGTACATAGGTGAGTTA
TATTTTTGAACTTTTATGGATAGGCGCAACTATACCAGGCTTCGCATCGC
CCGTGTTCAACGCTCCTCTGTGTGGATCAGTGTTGCCTCTTTTCGATGTC
ATTCTTAATCTCTGCATAATAATGCAGTTGTTGCCTCCGCCATGTCCGCG
CAACAGCCAAAGGTTCTGGTGTCACCATCCGATTTCTCCCTGCCCCCCCC
CCCCCCACCCCCCCTCCACCCCAACATACTTCTTCTCTTCCAGAAAAAAT
CCCGAACGAAAAAAGGAGCACAGAAGAGCGGAACGCAGCCACTCACCGCC
GCCCCCGAGGCAGAAGAAGAAGAAGGCCCGGTGCCCGACGGCTGGCGAAC
CCCGGAGATCAGGGCCCTCGAGGTTGGTCTCGAGATTCTTTTATTTTTCA
GACATTCGAAACCGGTTATTGTACAATATACGGACGGGCCTGTGGATAAC
AGGTGTAAGAGATGGTAACCAGAAGTAGGTACACATACCAACTAGTAGGA
AGATCCTATCTTTATCGGAGTATCATATCTACCCGTTGAATCGACAAGAT
AAGAGGTATTTCAAACTCGGCGTTCCCGGTTCCTTCGTATTTATTTGGCT
GTTCCACTCCCGGACTTTTATTCTTGGATGCCCAAAAGATCTGCCGAGTT
GTTTCAAACTCGCTCCTGCATATCTTGAGCCCACGGCGGGTCATTATTTG
CCTGTTCTTCGGTCACTAAATGACGTCGGCGCTGTGCATACTGTTCCTCA
TCAGTCATAAAATGACGTCTGTGCATGCATGAGGCATGTAGCCTCCCTTC
TGGCGCACACACAGCACAGGATGGTCGCATCCAGCGCCATCCGGGGCACG
CACAGTAGTTATGCACCAGGCTGGGGTGGTGTATTCCCACGACGTTTGTA
TAGCACAGTTAGTTTCATACTTTCAAATGCTCTTGGTGGTGACTCTGTGA
TACTGCGCGAGGGCACTCTCCCCCCGCGGGTCATGAGAAAATGTGCACAG
ATGAAGTTCGACAGAGAGAGGTATCATCTAGAGTGTTGTTCCCTCGTGGT
GTATACTGCTGTAGCACCGCAGTGTATCAGCCCTGACTGTACTTGCTACA
CGAAGCAGACAAAGTCTGCACAGCAGCAGTATTGTCTATGATATCTATTA
GCGACTGAAGTTAATATATGAGAGTCGTTCAACGCGCAAGATAAGTCTAT
CCTGTTGCAACAGCTCAGAGCAACATGCGAGGCCGAGATAATAGTTTCAC
CATCGTACCCCATCATTGCCCTAGAGATGGCAACCTACATAAAGTACGAG
CTGGGAAGCGACACATCCCTCAGAAACGAAGATAACCCATCGTATCGTTT
TCCGTTCTTTTAGAAGAGCGAGTATACCGCAGAGAGACGAGAAATGGATG
CAACACGGGTGTAAAGTGTAAACCAGTAGATACACCAGTAACCAGCAGAA
TAAAAATGCCCCGTCCATTGCGAGTAGCGAGTGCGGCCTAGTCGCTACTT
CGTTACCACAGGAGCAATGGGTATCGCTGCGTAGATCGGTGTTCGCGAGG
AACGAGGCACAGAGGAAGGGTGTGTGGAAGCAAGCAAGCTTTCCGGCCGG
GCAAATTGTGGGAGGCGGCCTACGGTACATACGCTAGAGAGGAGAGAGGA
AGAAAGTAGTGCTCGCCGGGGGTTCCCCAACCTCCCGGCTGCCCTCACTA
ACGTTGTATGTCACCACCATCATATTCGCCTCGATTGTGCCCCGTGTAGT
ATCGGCAATCGGCAACGGCGCGGCCCGTGTGTGTGTCTTTTCAACCTCGA
GGCATGGGTAGCATCTGTATGCGCATGTGGGCAGGCACAAAACATATGTG
AAGATCCTCCCGGGAATAATTCGTATCAGCGACGAAGTGCCCGATGAATA
TTTGTTCAGGAATGCTTTTGTTGGAAGAGCCAGCTGGAAATTCCAGGCCT
AAAGTTCTCCCGAGTTCAGGAATATCGGCGTGGCATTTCAAACTCAATAT
TCGGGAATTCCCGAATATCAACCCAACAAACCCGGGAACGTCGAGTTTGA
AATACCTCAGTGAGGTGTTTGCGCATTTGAAATTTTCGCAAAAGGTATGC
CATGCAAGAAGACAGAAAAAAGTGAAGTATTTCCGTCGTGCGCAACGGAA
AAAAATGGAATCTCGGAAAATCTGAATCTTCAGTACATTACACGGTTCTA
TTATCGAGAAAAATGCGCCGTTGACATAGCCAGCTTGCCAGCGTGTTGGA
TGGCAACTCTGCAAATCTGGAGCTGCGACACTCGACGAGCCACCTTTCGA
CATTTATTTCTAGTTTATAGGCGACCATCAGCACGTACGTACCGGTGCAC
GGGCAACAGACGCAGCTGTAATTAGTGCAAACCTATGATGCCATTGTTCG
TGGGCAGCAGAACTTCCACACAACGGCTCCTTCGCCCACGCGTGCAACAC
ACATACTCGCCGCCTTCCTCAAGCCCACACTCACAACAACTCCATCACAC
GCGGCCGCAGTAACAAGGGTCGAGCCCATGACCAACATTACACCCTCAAG
GTTCTCTCTGTCTCTGCATGGTGTGGGCGACTCATGCGTCGGAGGGGGTA
GGGCGTGTGTGCTGCTGCGCTCTGTTTGATGTCAGTGCGGGTTGCCTCGG
TGCAAAAACAAAAGAGCCCCAGCATCATGAACTGTTGTGTGAACCCAGCA
CTCCAAAGCACAAACAACAGAGGGACATCGGTCCGGTTGCGGCATACAGC
TCTTGTGTTTTCAGTCGCTGGGGATAGGTGTCTGCTGTTCTAGTGGGAGT
GTTAACGCGTGAGCCAACGACGCGACTGCCTGCCGGCGCACTTTCTCCGG
TTGCACAACCGACTAGTCGCCTGGTCGCTAGAGCATTGAAAAAGCTTTCG
AAAATTCTCTCATTTGCCGATTTCGCGAACAAGATTTGCAACTTTCTTCC
GGAGAACACCATATTGTTCCTCCGGAATGGTCGTTACCGGCGAAAATTTC
AAATGCGCAAACACCTTAATACAAGATGGAAACTCGAATCTTCCAGACAA
CAACTTGCCGAGACAAGAGCGGAGAGTCTTCGACGTCTCGCTCTAGTCCG
GCACTCTTGTGCCTCTCCTCTTGCCTAAATATGACGAAAGGAAACTAGCC
GCCCCTGGCAGTGGGTGAATTCTGCCACGACCTGGGCCACCTTCTACGGA
CGGTAGCCTGTGTCTTCAGGCCGACTTTTTTTTGTTGTTGGTGGGTTTGT
GTACAAAAAACAGCCGGTCCGACCAGGCAGGAGACGTGAAGGCTCGGGGG
GAGTTAGGGGGGTATTCTGATACGACACTCACACACCGCTCTCCTCCTGG
TACGCCTACCCCCGCCCCCGCACAAAAACCGAGCGGCCTTTTCTCGAAAA
GACGCACATCGGCAGAGGGGCTGGCTGGCACATCGATCGGCTCAAAACAC
CTCCGGCTCCCTCTTTACCGTCTCATCGCCAGCAGCGGCAACACCAGCAG
CAGTATCTGTCCCATGCATCGTATGTGTCACGAACAAAGTACGGAAGAAA
TGCCGCGGCGAGAACGCCGCCGCCGCCGCCGCCGCTGCTGCTGCTGCTGC
TGCTACGGGCCATTGGTCGAAATCCTTTGCCTTGAGCTCTCGAGTCTCCG
TGTCTCATCTCGCCGGGATAACTCTGCTCCTAGGTAGTAAAGAGGTGGGA
CGAACACATCTTTTGGGGCGAGCGACGTCGATGTGCATACTTTCTCTTTG
GGATTTCGTGATCTCGCCCTCTCTCTCTCTCTCTCCTCGCACTGGCTAAA
TAAGTACTGCTGCTGTGCTCTGTGTTCGCGCGCCATCGTGGTTTGTCACA
ACCTTTTCTTTTTCGCCCACATGAACATATATGCAGGACCAGATCAACAG
CCGCGTCGACCTCGTGTTGCGGATGGCGGACGAGAAGTGGCGCCTGGCGC
AGCACGCATACGACAGGCTGGACGTCAACATCCGCCGTCTAGATGCAGAT
CTCGGCCGTATGGAGGTATGTATGTATGTACCTGAAAGGCTCGATGCTCA
CGTGCTCTTGTTGTTGTCTTCACATTAAAAACTAAAAACCGTTCGGATCT
ATCCAGTACGCCTCACACATGATGGATGGATACACACCCGTGTACGCTCT
CGCCAAGTCACACGCAAGATGCTTGTGTCTGTGTGTGTGTCTGTGTGTCT
GTGTGTCTGTGTGTGTGTGTGTGTGTGTAGAAAATCTATTTGGTAGAAGT
AGTAGTTCATGTTCACGCGGGGCTGCCAAATGTAGACGAAGCTCTCGTTG
CGCCACCTGGTACATGCATGGTTGGCGAACCCTTGCTGCACAGCAGTTTT
TCCCGGGAAGGCTTCTCTTAACCACGCTGTCGGCTTGGCACTACACACAC
AACACACACACACACACACACACACACTACACACAGCAAAGGTCGATAAA
TTCCATCTCCCTAAAGGGCCCCAAAGCTACGTAGTTTTTCATCGTGTTTT
TCATCGTTTTCCCACCATGGCCCCCATCCAGTCAGACTATCGCGCTGCGT
AGCCCCCCCTCTCCTCGTTTAACCCCAAGCTTATAGATATATATATAACA
CCCTCCCTTTTCCCGTCGAACTTTCCGATCCGGTCGCGTCCTTTGCCTTT
TCATCACGCTAGACGGACCTACGTCGGCAGGGCCTGCTGCCCCCTCGCGA
GGTGGCGACTCCGTCCAGAAAGCGCCGCCGGACGGGAGCGAAGAAAGCCG
ACGAGCCCGAGTCGGAGTGGTTGGGCCTCAGCCTATCGGAACGGGTGAGA
GAGGCTCAGATATATGTACATATATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5023:1172..6598-

>mRNA_L-elsbetiae_contig5023.13039.1 ID=mRNA_L-elsbetiae_contig5023.13039.1|Name=mRNA_L-elsbetiae_contig5023.13039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig5023:1172..6598- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCTCGATCGGCATGCTCGACGACCGCGTCCAGTCTATCTCCGCGCT
GATCGACACAGACATCGGCGAGATGTCCTCGATCGGCATGCTCGACGACC
GCGTCCAGTCTATCTCCGCGCTGATCGACACAGACATCGGCGAGAAAAAA
TCCCGAACGAAAAAAGGAGCACAGAAGAGCGGAACGCAGCCACTCACCGC
CGCCCCCGAGGCAGAAGAAGAAGAAGGCCCGGTGCCCGACGGCTGGCGAA
CCCCGGAGATCAGGGCCCTCGAGAAAAAATCCCGAACGAAAAAAGGAGCA
CAGAAGAGCGGAACGCAGCCACTCACCGCCGCCCCCGAGGCAGAAGAAGA
AGAAGGCCCGGTGCCCGACGGCTGGCGAACCCCGGAGATCAGGGCCCTCG
AGGACCAGATCAACAGCCGCGTCGACCTCGTGTTGCGGATGGCGGACGAG
AAGTGGCGCCTGGCGCAGCACGCATACGACAGGCTGGACGTCAACATCCG
CCGTCTAGATGCAGATCTCGGCCGTATGGAGGACCAGATCAACAGCCGCG
TCGACCTCGTGTTGCGGATGGCGGACGAGAAGTGGCGCCTGGCGCAGCAC
GCATACGACAGGCTGGACGTCAACATCCGCCGTCTAGATGCAGATCTCGG
CCGTATGGAGACGGACCTACGTCGGCAGGGCCTGCTGCCCCCTCGCGAGG
TGGCGACTCCGTCCAGAAAGCGCCGCCGGACGGGAGCGAAGAAAGCCGAC
GAGCCCGAGTCGGAGTGGTTGGGCCTCAGCCTATCGGAACGGGTGAGAGA
GGCTCAGATATATGTACATATATGAACGGACCTACGTCGGCAGGGCCTGC
TGCCCCCTCGCGAGGTGGCGACTCCGTCCAGAAAGCGCCGCCGGACGGGA
GCGAAGAAAGCCGACGAGCCCGAGTCGGAGTGGTTGGGCCTCAGCCTATC
GGAACGGGTGAGAGAGGCTCAGATATATGTACATATATGA
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