prot_L-elsbetiae_contig5017.13029.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5017.13029.1
Unique Name	prot_L-elsbetiae_contig5017.13029.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	166

Homology

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5JG14_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG14_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 7.170e-39
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTITKAYA+PS VTGEGGL+E+YSPGDLGFDPL + PK +A L  MQTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:    6 YNTITKAYAEPSPVTGEGGLREEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 83

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 1.170e-36
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL + PK +A L  MQTKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct:  144 YNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5L7D2_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.820e-34
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 164
            YNTITKAYA+PS VTGEGGL++DYS GDLGFDPL + PK +A L TMQTKELNNGRLAMIGIAGMLVQEL+N  +IL
Sbjct:   36 YNTITKAYAEPSFVTGEGGLRDDYSLGDLGFDPLNLKPKDQAALETMQTKELNNGRLAMIGIAGMLVQELVNSINIL 112

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5JVY1_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.290e-33
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTI  A+  PS VTGEGGLKEDY PGDLGFDPL + P  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:   54 YNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 131

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.600e-33
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTI  A+  PS VTGEGGLKEDY PGDLGFDPL + P+ EA L  M+TKELNNGRLAMIGIAGMLVQELINPADILG
Sbjct:  143 YNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 5.880e-33
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADIL 164
            YNTITKAYA+PS VTGEGGL+++YSPGDLGFDPL + P  +  L TMQTKELNNGRLAMIGIAG LVQEL+NP +IL
Sbjct:   98 YNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5JVV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.200e-32
Identity = 59/78 (75.64%), Postives = 63/78 (80.77%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTI  A+  PS VTGEGGLKEDY PGDLGFDPL + P  EA L  M+TKELNNGRLAMIGIAGML QEL+NPA ILG
Sbjct:    6 YNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPAGILG 83

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BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.450e-32
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTI  A+  PS VTGEGGLKEDY PGDLGFDPL + P  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:  115 YNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

[Close]

BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 3.870e-32
Identity = 60/78 (76.92%), Postives = 64/78 (82.05%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTI  A+  PS VTGEGGLKEDY PGDLGFDPL + P  EA L  M+TKELNNGRLAMIGIAGML QEL+NPADILG
Sbjct:  119 YNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

[Close]

BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.380e-31
Identity = 59/78 (75.64%), Postives = 65/78 (83.33%), Query Frame = 0

Query:   88 YNTITKAYAKPSEVTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIAGMLVQELINPADILG 165
            YNTI KAYA+PS VTGEGGL+++YSPGDLGFDP  I PK +A L  MQ KELNNGRLAMIGI GMLVQEL+N  DILG
Sbjct:  141 YNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5017.13029.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JG14_9PHAE	7.170e-39	83.33	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7S1_ECTSI	1.170e-36	82.05	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5L7D2_9PHAE	6.820e-34	79.22	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5JVY1_9PHAE	4.290e-33	76.92	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q6_ECTSI	4.600e-33	79.49	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q7_ECTSI	5.880e-33	76.62	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JVV6_9PHAE	1.200e-32	75.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K8D0_9PHAE	2.450e-32	76.92	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G7S5_ECTSI	3.870e-32	76.92	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	1.380e-31	75.64	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 88..156 e-value: 6.2E-17 score: 62.6
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 44..164 e-value: 8.8E-17 score: 63.3
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 101..159
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 103..164
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 101..159

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5017	contig	L-elsbetiae_contig5017:2606..4637 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5017.13029.1	mRNA_L-elsbetiae_contig5017.13029.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5017 2606..4637 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5017.13029.1 ID=prot_L-elsbetiae_contig5017.13029.1|Name=mRNA_L-elsbetiae_contig5017.13029.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MILNYLRYRSSTPLGCLTALNLERSSSGARPRSSMDASPCSHRSGFLSPR
STTRSFWALTTSAPLWTTSRRSPLSTPSSGYSPSWAWYNTITKAYAKPSE
VTGEGGLKEDYSPGDLGFDPLGIMPKTEADLVTMQTKELNNGRLAMIGIA
GMLVQELINPADILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln