Homology
BLAST of mRNA_L-elsbetiae_contig5004.13010.1 vs. uniprot
Match:
D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)
HSP 1 Score: 112 bits (280), Expect = 6.810e-27
Identity = 68/130 (52.31%), Postives = 81/130 (62.31%), Query Frame = 0
Query: 85 YLSQLPPEAKQRWLHRGWFVMLRVRHQIYLAQ-QHSVSQMSRVWLCRRNARDPRGIT-LAKMDDPLVTAGGERSAGTQGVIGIELCEEGNSNQETARLIEGNPNSEFARAVVSVIGIIEEGLFRHIVLYL 212
+LS P ++RW RGW VMLR RHQI+LAQ Q + SQ WLC+R RD GIT + DDPL TAG E S G QG+ IEL E+G +QE FA+AVVSV GI+EEG+FR I LYL
Sbjct: 134 HLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQP---WLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQE------------FAQAVVSVAGIMEEGIFRGITLYL 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5004.13010.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 vs UniRef90 )
Total hits: 1
20 40 60 80 100 120 140 160 180 200 Expect = 6.81e-27 / Id = 52.31 Sequence D8LRK1_ECTSI
Match Name E-value Identity Description
D8LRK1_ECTSI 6.810e-27 52.31 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name:
InterProScan on OGS1.0
Date Performed: 2022-09-29
20 40 60 80 100 120 140 160 180 200 Score = Score = Score = Score = Sequence NON_CYTOPLASMIC_DOMAIN TRANSMEMBRANE CYTOPLASMIC_DOMAIN TMhelix
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available PHOBIUS NON_CYTOPLASMIC_DOMAIN Non cytoplasmic domain coord: 58..212
None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 34..57
None No IPR available PHOBIUS CYTOPLASMIC_DOMAIN Cytoplasmic domain coord: 1..33
None No IPR available TMHMM TMhelix coord: 34..56
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_L-elsbetiae_contig5004.13010.1 ID=prot_L-elsbetiae_contig5004.13010.1|Name=mRNA_L-elsbetiae_contig5004.13010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp MPNLRTTGSTVKFLRAQPRYLSFGSYSSCIVKSILLVVIPISIALVCALF WPVVLFICCIRTCSHCIKARQKMAALRRRDEAISYLSQLPPEAKQRWLHR GWFVMLRVRHQIYLAQQHSVSQMSRVWLCRRNARDPRGITLAKMDDPLVT AGGERSAGTQGVIGIELCEEGNSNQETARLIEGNPNSEFARAVVSVIGII EEGLFRHIVLYL* back to top