mRNA_L-elsbetiae_contig5003.13007.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5003.13007.1
Unique NamemRNA_L-elsbetiae_contig5003.13007.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match: D7FS85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS85_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 9.190e-42
Identity = 154/312 (49.36%), Postives = 178/312 (57.05%), Query Frame = 1 
Query:    1 DAESLLARLAGKAKQAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA-TGSLADVA-----GGPGDYAGAAVGSSETGEG-------GGGGRREPGLAAVEAG---GGRARLAELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQSIMQEGGPAAGRRPGVGGPDGAQGAGS-----RSVESLSXXXXXXXX-----DTKALREALRVAEEASRAXXXXXXXEHAGRVAMAEELRRAKEQADDLRRQLNHRVRA-GKPLLVAAPEDDARPGLDSLGG 855
            DAE+LLARLAGKAKQAAA A                              A   S+ D        G   + GAA+    TGE           GR+ P +AA   G    G ARLAELCKEDK KVARLMQDLVKLR EK+GQ  RFERLRAQNESIVK+MA LK KFGQSMQLLRKYQSI+QEGG A       GG  G +G G      + +E   XXXXXXXX     + +ALRE LR+AEE++R        + +GR AMAEELR+A+ QAD+LRRQL+H  R   +   VAA E   R  L  LGG
Sbjct:  123 DAEALLARLAGKAKQAAAVALSASAASGGMTPDLTARSAPTGTVTRNVKSAGVESITDATVRVRFSGDKGHLGAAIKRGTTGEDCRDESTVTAVGRQVPEVAAAAGGVAVDGGARLAELCKEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKQMAGLKDKFGQSMQLLRKYQSIVQEGGAAD-----EGGGVGVRGKGXXXXXXKRLEKXXXXXXXXXXXXXXAEIQALRETLRLAEESTRKAEAEAAAQRSGRTAMAEELRQARGQADELRRQLDHHRRLQARDSPVAAREGPRRNDLGLLGG 429
[Close]
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match: A0A6H5K9R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R0_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.740e-40
Identity = 137/280 (48.93%), Postives = 157/280 (56.07%), Query Frame = 1 
Query:    1 DAESLLARLAGKAKQAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVA-TGSLADVA-----GGPGDYAGAAVGSSETGE-------GGGGGRREPGLAAVEAG---GGRARLAELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQSIMQEGG-PAAGRRPGVGGPDGAQGAGSRSVESLSXXXXXXXXDTKALREALRVAE-EASRAXXXXXXXEHAGRVAMAEELRRAKEQADDLRRQLNHRVR 786
            DAE+LLARLAGKAKQAAA A                              A   S+ D A      G   + GAA+  S TGE           GR+ P +AA   G    G ARLAELC+EDK KVARLMQDLVKLR EK+GQ  RFERLRAQNESIVKEMA LKVKFGQSMQLLRKYQSI+QEGG P  G   GV G     GA  R +E           + +ALRE       E++R        + + R AMAEELR+A+ QAD+LRRQL+H  R
Sbjct:  212 DAEALLARLAGKAKQAAAVALSASAASGGMTPDPTARAAPTGIVTRNVKSAGVESITDAAVRVRFSGDTGHVGAAIRRSTTGEECRDESMATAVGRQVPEVAAAAGGVAIDGGARLAELCQEDKTKVARLMQDLVKLRQEKEGQKTRFERLRAQNESIVKEMAGLKVKFGQSMQLLRKYQSIVQEGGAPGGGXXVGVRGKXXXXGACKR-LEKQEAAATAAAAEIQALREXPSAKRRESARKAEAEAAVQRSDRTAMAEELRQARGQADELRRQLDHHRR 490
[Close]
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match: A0A835Z7B7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.670e-7
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  286 GRARLAELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQ---SIMQE 507
            G ARL +LC  DKAKVA+LMQ+L   +AE   +  R ERLRAQN  IV E A  + +  Q++ LL+KYQ   S++Q+
Sbjct:   42 GEARLVDLCPSDKAKVAKLMQELSAAQAEAAARAHRLERLRAQNAEIVAETADTRSRLTQAVLLLKKYQARASLLQQ 118
[Close]
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Match: A0A7S2SSJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSJ5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.860e-5
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:  292 ARLAELCKEDKAKVARLMQDLVKLRAEKDGQ-----------GARFERLRAQNESIVKEMAALKVKFGQSMQLLRKYQ 492
            ARL +LC  DK++VARL+  L+++  E D              +R +RLR QN+ IV EMAAL+ KFGQ++ L ++YQ
Sbjct:   56 ARLTDLCAADKSRVARLIDQLLRVTTEHDKAVEDWGRERATFESRIQRLRKQNDEIVGEMAALRKKFGQTLTLAQQYQ 133
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5003.13007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FS85_ECTSI9.190e-4249.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9R0_9PHAE3.740e-4048.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7B7_9STRA6.670e-749.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SSJ5_9STRA5.860e-543.59Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5003contigL-elsbetiae_contig5003:3906..6377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_004990.1
Exons4
Model size1084
Cds size1080
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5003.13007.1prot_L-elsbetiae_contig5003.13007.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5003 3906..6375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816503.6986463-CDS-L-elsbetiae_contig5003:3905..43971622816503.6986463-CDS-L-elsbetiae_contig5003:3905..4397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 3906..4397 +
1691683607.201047-CDS-L-elsbetiae_contig5003:3905..43971691683607.201047-CDS-L-elsbetiae_contig5003:3905..4397Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 3906..4397 +
1622816503.7111797-CDS-L-elsbetiae_contig5003:5003..51711622816503.7111797-CDS-L-elsbetiae_contig5003:5003..5171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 5004..5171 +
1691683607.2128234-CDS-L-elsbetiae_contig5003:5003..51711691683607.2128234-CDS-L-elsbetiae_contig5003:5003..5171Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 5004..5171 +
1622816503.7243617-CDS-L-elsbetiae_contig5003:5693..57861622816503.7243617-CDS-L-elsbetiae_contig5003:5693..5786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 5694..5786 +
1691683607.2234256-CDS-L-elsbetiae_contig5003:5693..57861691683607.2234256-CDS-L-elsbetiae_contig5003:5693..5786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 5694..5786 +
1622816503.7348506-CDS-L-elsbetiae_contig5003:6048..63751622816503.7348506-CDS-L-elsbetiae_contig5003:6048..6375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 6049..6375 +
1691683607.2327373-CDS-L-elsbetiae_contig5003:6048..63751691683607.2327373-CDS-L-elsbetiae_contig5003:6048..6375Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5003 6049..6375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5003.13007.1

>prot_L-elsbetiae_contig5003.13007.1 ID=prot_L-elsbetiae_contig5003.13007.1|Name=mRNA_L-elsbetiae_contig5003.13007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=360bp
DAESLLARLAGKAKQAAAAALSASAAASGAERAGPAAARRPERAAAATAV
ATGSLADVAGGPGDYAGAAVGSSETGEGGGGGRREPGLAAVEAGGGRARL
AELCKEDKAKVARLMQDLVKLRAEKDGQGARFERLRAQNESIVKEMAALK
VKFGQSMQLLRKYQSIMQEGGPAAGRRPGVGGPDGAQGAGSRSVESLSAA
AAAAAADTKALREALRVAEEASRAAKAAAAAEHAGRVAMAEELRRAKEQA
DDLRRQLNHRVRAGKPLLVAAPEDDARPGLDSLGGAALARSAEQAPAATA
SGKTTPLAAARGETAAAARRKVLPSTSTAGKGDARPERPHSQAALAGVSG
HCRATSGGGR
back to top

mRNA from alignment at L-elsbetiae_contig5003:3906..6377+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5003.13007.1 ID=mRNA_L-elsbetiae_contig5003.13007.1|Name=mRNA_L-elsbetiae_contig5003.13007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2472bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:3906..6377+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCGGAGTCGTTGCTCGCCCGCCTCGCCGGGAAGGCTAAGCAGGCCGC
GGCCGCGGCGCTGTCAGCGTCGGCGGCGGCATCAGGAGCCGAGAGGGCGG
GGCCGGCGGCAGCACGGCGGCCGGAAAGAGCGGCGGCCGCAACCGCCGTG
GCGACCGGGTCTCTCGCGGATGTCGCCGGAGGGCCCGGAGACTACGCCGG
TGCCGCCGTCGGGTCTAGCGAAACCGGGGAGGGTGGCGGCGGCGGGCGGC
GAGAGCCGGGGTTGGCAGCTGTCGAAGCAGGCGGGGGTCGCGCGAGGCTG
GCGGAGCTGTGCAAGGAGGACAAGGCGAAGGTCGCTCGTCTGATGCAGGA
CCTCGTGAAGCTCAGGGCCGAGAAGGACGGGCAGGGGGCTCGCTTCGAGC
GGCTGCGGGCGCAGAACGAGTCGATCGTGAAGGAGATGGCGGCGCTCAAG
GTCAAGTTCGGGCAGAGCATGCAGCTCCTGAGGAAGTACCAGGTCGGTTG
GGTGTGCTTTTTTTGTGTTGGCGCCCCGTGTCTTGTGTGTGTGTGTGTTT
TTTTTTTTTCTTCCTTTCTGATGTTGATGTTATTTAGCCGCGATGGTTCT
CTTTTGCGCCGTTGTTGCACCAGCGGCAAGCTTCTTGAGAGTTTCCCAGT
GGCGCGGGGTGCACCGTGGGTTTCATCGATGCGTTGGAGGGCCGCATAGT
CGCGCACCCTACGTCATGGCGTTACTCGCGCGATATGCACTCTACCTTGA
TTTAGTGTCGGCGAGACGCACGACCCCTTGGGGTCCAGTTTAGTACCGCC
GGGCGCGTATGTACGTACCGTATTTTTTGTTTTATTTTTCTTCCGCGGCG
TCGAGTGTGCCTTGTTTTGTGACCACGGGCCCCCAAGGACGTTTCGGACT
AGGGAGCTAATGTGAGAAACAACAACAACTCGCGGCGCCTGTTGAGCAAG
GCCGCACTGCGCGCCGTGTGTCGATGGGTAAACGGCTTAAACGGTATATA
GGCAGCCCCGTAAATGTACAGCAGTAGTCGCCACCACTTTTTATCAATTT
TTGCCGCGGCCCCTCTGGGTGTACTCCGCCGGCCGTGTCTGGTTGCAGAG
CATCATGCAAGAGGGGGGCCCAGCAGCTGGCAGAAGACCCGGCGTGGGCG
GTCCTGACGGTGCGCAGGGTGCCGGGTCGCGATCGGTGGAAAGCCTGTCG
GCGGCGGCGGCGGCGGCGGCGGCAGATACGAAGGCACTCCGCGAGGCGCT
TCGAGTGGCCGAGGAGGTGCGTCGGCGAAAACACCCACCGCGGGCGTTTG
TTTCGGGGGAGGGAAAGGCGGTTGACCTACTGTGCATTCACGGCGACTTC
CGCCCGAACAACGGAGTTGGGAACGGTGAAAATACATTTTGATGCTCGTA
CTTGGGGGGTTCGGCATTCGTTTCTAGGACGCTGGGGGGCTGGGGGCGTC
CCTGACGGGTGGGGTTTCTTTGAGCAGCTCCGCTACTGGTCAGAATAACG
AAACGAGGATTAATTGGCAGCCAGATTATGTCGCCGCTCCTTTCTCCACG
TATCAGCTTTGCCCGGATATGCTTGCTTGGAGTTCTGCGACACATGTACA
TATATACGCCCCAACTTTTAGGACGAGTACTGAGGTGCAAGCGCGTAGAA
TGTCGACACGAAGTGGAGCCGCTCTGTCTGCTATCGGCATTCGGAGTACT
CCGCGCCGTTCTATGCTCACTTGTCCTGTCTTGTCTTGCCCTCCGTCGCT
TCGACTTGTGTGGCTTTCTCCTCTGACGTTCTCGACAGGCGTCGCGGGCA
GCCAAGGCAGCGGCGGCCGCAGAACACGCCGGGCGTGTGGCGATGGCAGA
GGAGCTGCGGAGGGCTAAGGAGCAGGCAGACGTGAGCAGCCCAGCCGCTG
CTGAAGTAATAGCTACCGCTTTCAGTTTGCTCGACGTTGTTTTGTATCTC
CCGTTCGCGCGGGCGGAAGCTTGACGTGAATGCGTACGGAGGTGGAGTGC
CCGTACCCGAACCTCGACCATACGTAACAGCCCGCTGACGCGGCAGCTCT
CAGATTTCACGCTCTTTGTGCAGGTGCATCCAGCATCGCTGACCCCCCCC
CCCGCCCATCGCCCTTTGCTCCTCTTTCCTCTCGTGCCTGCAGGACTTAC
GGCGGCAGCTCAACCACCGCGTTCGGGCGGGAAAACCTCTCCTCGTCGCA
GCCCCAGAAGACGACGCGCGCCCGGGCCTCGATTCTCTCGGCGGCGCCGC
TCTTGCGCGCTCGGCAGAACAAGCTCCCGCAGCCACGGCGTCGGGTAAGA
CAACGCCGCTGGCGGCCGCCCGGGGGGAGACCGCTGCGGCTGCTCGCAGG
AAGGTGCTCCCGAGCACGAGCACGGCCGGCAAGGGCGACGCGCGACCGGA
ACGTCCTCACAGTCAGGCGGCTCTAGCGGGCGTTTCCGGACACTGCCGAG
CGACCTCGGGGGGTGGGAGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5003:3906..6377+

>mRNA_L-elsbetiae_contig5003.13007.1 ID=mRNA_L-elsbetiae_contig5003.13007.1|Name=mRNA_L-elsbetiae_contig5003.13007.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2160bp|location=Sequence derived from alignment at L-elsbetiae_contig5003:3906..6377+ (Laminarionema elsbetiae ELsaHSoW15)
GACGCGGAGTCGTTGCTCGCCCGCCTCGCCGGGAAGGCTAAGCAGGCCGC
GGCCGCGGCGCTGTCAGCGTCGGCGGCGGCATCAGGAGCCGAGAGGGCGG
GGCCGGCGGCAGCACGGCGGCCGGAAAGAGCGGCGGCCGCAACCGCCGTG
GCGACCGGGTCTCTCGCGGATGTCGCCGGAGGGCCCGGAGACTACGCCGG
TGCCGCCGTCGGGTCTAGCGAAACCGGGGAGGGTGGCGGCGGCGGGCGGC
GAGAGCCGGGGTTGGCAGCTGTCGAAGCAGGCGGGGGTCGCGCGAGGCTG
GCGGAGCTGTGCAAGGAGGACAAGGCGAAGGTCGCTCGTCTGATGCAGGA
CCTCGTGAAGCTCAGGGCCGAGAAGGACGGGCAGGGGGCTCGCTTCGAGC
GGCTGCGGGCGCAGAACGAGTCGATCGTGAAGGAGATGGCGGCGCTCAAG
GTCAAGTTCGGGCAGAGCATGCAGCTCCTGAGGAAGTACCAGGACGCGGA
GTCGTTGCTCGCCCGCCTCGCCGGGAAGGCTAAGCAGGCCGCGGCCGCGG
CGCTGTCAGCGTCGGCGGCGGCATCAGGAGCCGAGAGGGCGGGGCCGGCG
GCAGCACGGCGGCCGGAAAGAGCGGCGGCCGCAACCGCCGTGGCGACCGG
GTCTCTCGCGGATGTCGCCGGAGGGCCCGGAGACTACGCCGGTGCCGCCG
TCGGGTCTAGCGAAACCGGGGAGGGTGGCGGCGGCGGGCGGCGAGAGCCG
GGGTTGGCAGCTGTCGAAGCAGGCGGGGGTCGCGCGAGGCTGGCGGAGCT
GTGCAAGGAGGACAAGGCGAAGGTCGCTCGTCTGATGCAGGACCTCGTGA
AGCTCAGGGCCGAGAAGGACGGGCAGGGGGCTCGCTTCGAGCGGCTGCGG
GCGCAGAACGAGTCGATCGTGAAGGAGATGGCGGCGCTCAAGGTCAAGTT
CGGGCAGAGCATGCAGCTCCTGAGGAAGTACCAGAGCATCATGCAAGAGG
GGGGCCCAGCAGCTGGCAGAAGACCCGGCGTGGGCGGTCCTGACGGTGCG
CAGGGTGCCGGGTCGCGATCGGTGGAAAGCCTGTCGGCGGCGGCGGCGGC
GGCGGCGGCAGATACGAAGGCACTCCGCGAGGCGCTTCGAGTGGCCGAGG
AGAGCATCATGCAAGAGGGGGGCCCAGCAGCTGGCAGAAGACCCGGCGTG
GGCGGTCCTGACGGTGCGCAGGGTGCCGGGTCGCGATCGGTGGAAAGCCT
GTCGGCGGCGGCGGCGGCGGCGGCGGCAGATACGAAGGCACTCCGCGAGG
CGCTTCGAGTGGCCGAGGAGGCGTCGCGGGCAGCCAAGGCAGCGGCGGCC
GCAGAACACGCCGGGCGTGTGGCGATGGCAGAGGAGCTGCGGAGGGCTAA
GGAGCAGGCAGACGCGTCGCGGGCAGCCAAGGCAGCGGCGGCCGCAGAAC
ACGCCGGGCGTGTGGCGATGGCAGAGGAGCTGCGGAGGGCTAAGGAGCAG
GCAGACGACTTACGGCGGCAGCTCAACCACCGCGTTCGGGCGGGAAAACC
TCTCCTCGTCGCAGCCCCAGAAGACGACGCGCGCCCGGGCCTCGATTCTC
TCGGCGGCGCCGCTCTTGCGCGCTCGGCAGAACAAGCTCCCGCAGCCACG
GCGTCGGGTAAGACAACGCCGCTGGCGGCCGCCCGGGGGGAGACCGCTGC
GGCTGCTCGCAGGAAGGTGCTCCCGAGCACGAGCACGGCCGGCAAGGGCG
ACGCGCGACCGGAACGTCCTCACAGTCAGGCGGCTCTAGCGGGCGTTTCC
GGACACTGCCGAGCGACCTCGGGGGGTGGGAGGGACTTACGGCGGCAGCT
CAACCACCGCGTTCGGGCGGGAAAACCTCTCCTCGTCGCAGCCCCAGAAG
ACGACGCGCGCCCGGGCCTCGATTCTCTCGGCGGCGCCGCTCTTGCGCGC
TCGGCAGAACAAGCTCCCGCAGCCACGGCGTCGGGTAAGACAACGCCGCT
GGCGGCCGCCCGGGGGGAGACCGCTGCGGCTGCTCGCAGGAAGGTGCTCC
CGAGCACGAGCACGGCCGGCAAGGGCGACGCGCGACCGGAACGTCCTCAC
AGTCAGGCGGCTCTAGCGGGCGTTTCCGGACACTGCCGAGCGACCTCGGG
GGGTGGGAGG
back to top