prot_L-elsbetiae_contig4996.12991.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4996.12991.1
Unique Nameprot_L-elsbetiae_contig4996.12991.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length134
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Match: A0A6H5L249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L249_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.860e-45
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = 0 
Query:    2 QVLVEQAGATFDVYPASITTKYYNAQVNLWRQTQATVPVLALRSADELEGLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDGEEAAG 105
            QVL+EQA A FDV+PASITTKYYNAQ++ WRQ QA VP+LALRSA++LEGLEGIIVLFDLR+ES F EA+QWAA + DRE+CAFRVCVGSKLDL+P+D  + AG
Sbjct:   61 QVLLEQANAKFDVFPASITTKYYNAQISFWRQAQAAVPILALRSAEQLEGLEGIIVLFDLRQESGFDEASQWAALMEDREECAFRVCVGSKLDLLPQDPGDGAG 164
[Close]
BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Match: D7FHG9_ECTSI (IRC6, uncharacterized protein interacting with AP adaptor complexes n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.290e-29
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 0 
Query:   28 VNLWRQTQATVPVLALRSADELEGLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDGEEAAGGSRFGEELSAPPEDIKPAE 124
            ++ WRQ QA VPVLALRSA++LEGLEGIIV+FDLR+ESS  E AQWAA V DRE+CAFRVCVGSKLDL+PED  +  G   FG      PE   PAE
Sbjct:    7 ISFWRQAQAAVPVLALRSAEQLEGLEGIIVVFDLRQESSLDEVAQWAALVEDREECAFRVCVGSKLDLLPEDPGDGTG---FGTGAETAPE---PAE 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4996.12991.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L249_9PHAE2.860e-4575.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHG9_ECTSI2.290e-2965.98IRC6, uncharacterized protein interacting with AP ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001806Small GTPasePFAMPF00071Rascoord: 48..98
e-value: 9.6E-5
score: 22.0
NoneNo IPR availableGENE3D3.40.50.300coord: 43..123
e-value: 1.1E-5
score: 27.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4996contigL-elsbetiae_contig4996:1420..3739 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4996.12991.1mRNA_L-elsbetiae_contig4996.12991.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4996 1420..3739 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4996.12991.1 ID=prot_L-elsbetiae_contig4996.12991.1|Name=mRNA_L-elsbetiae_contig4996.12991.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RQVLVEQAGATFDVYPASITTKYYNAQVNLWRQTQATVPVLALRSADELE
GLEGIIVLFDLRKESSFAEAAQWAAFVNDREQCAFRVCVGSKLDLVPEDG
EEAAGGSRFGEELSAPPEDIKPAEPNGGGGGDGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase