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Homology
BLAST of mRNA_L-elsbetiae_contig4995.12990.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 8.500e-19 Identity = 64/111 (57.66%), Postives = 73/111 (65.77%), Query Frame = 3
Query: 180 GAGGEADRQTAAT--EKVAAALSVGGVALAPKSRADVEDTVDAAVQAALLWLLSGRGSGARTAG--TAARALQAAAVHLAAYWLEPYRTVSRTTGCRTSRYLESTVEDAAI 500
G G+A A T K A SVGGVA+ P+S ADV DTVDAAV+ ALLWLLSG G R G A A QAAAVHL A W+E Y+ +SRT G R SR+LEST EDAA+
Sbjct: 973 GGDGKAGAGAAGTGVRKEAEGFSVGGVAVVPESWADVGDTVDAAVEGALLWLLSGVRGGGRVGGXXAAETAQQAAAVHLVACWVERYQAMSRTIGRRGSRHLESTAEDAAV 1083
BLAST of mRNA_L-elsbetiae_contig4995.12990.1 vs. uniprot
Match: A0A6H5JML9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML9_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.240e-16 Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 3
Query: 210 AATEKVAAALSVGGVALAPKSRADVEDTVDAAVQAALLWLLSG--RGSGARTAGTAARALQAAAVHLAAYWLEPYRTVSRTTGCRTSRYLESTVEDAAI 500
A K A SVGGV + P+S ADV DTVDAAV+A LLWLL G G GTA A QAAAVHL A W+E Y+ +SRT G R S +LES EDAA+
Sbjct: 522 AGLRKEAEGFSVGGVVVVPESWADVGDTVDAAVEAVLLWLLRSVRGGGGVDGGGTAETAQQAAAVHLVACWMERYQAMSRTAGRRASGHLESIAEDAAV 620
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 99.0 |
| Seed ortholog evalue | 2.1e-18 |
| Seed eggNOG ortholog | 2880.D8LHI7 |
| Preferred name | RPAP1 |
| KEGG ko | ko:K19496,ko:K20826 |
| KEGG TC | 1.A.17.1.1,1.A.17.1.22 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030154,GO:0030880,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048869,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 |
| EggNOG free text desc. | transcription by RNA polymerase II |
| EggNOG OGs | KOG4732@1,KOG4732@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03021,ko04040 |
| Exons | 2 |
| Model size | 1151 |
| Cds size | 462 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816500.8698432-UTR-L-elsbetiae_contig4995:11306..11825 | 1622816500.8698432-UTR-L-elsbetiae_contig4995:11306..11825 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig4995 11307..11825 - |
| 1691683604.9730647-UTR-L-elsbetiae_contig4995:11306..11825 | 1691683604.9730647-UTR-L-elsbetiae_contig4995:11306..11825 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig4995 11307..11825 - |
| 1622816500.904664-UTR-L-elsbetiae_contig4995:12514..12684 | 1622816500.904664-UTR-L-elsbetiae_contig4995:12514..12684 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig4995 12515..12684 - |
| 1691683605.0070908-UTR-L-elsbetiae_contig4995:12514..12684 | 1691683605.0070908-UTR-L-elsbetiae_contig4995:12514..12684 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig4995 12515..12684 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816500.882329-CDS-L-elsbetiae_contig4995:11825..12071 | 1622816500.882329-CDS-L-elsbetiae_contig4995:11825..12071 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4995 11826..12071 - |
| 1691683604.9853363-CDS-L-elsbetiae_contig4995:11825..12071 | 1691683604.9853363-CDS-L-elsbetiae_contig4995:11825..12071 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4995 11826..12071 - |
| 1622816500.8926802-CDS-L-elsbetiae_contig4995:12298..12514 | 1622816500.8926802-CDS-L-elsbetiae_contig4995:12298..12514 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4995 12299..12514 - |
| 1691683604.9958313-CDS-L-elsbetiae_contig4995:12298..12514 | 1691683604.9958313-CDS-L-elsbetiae_contig4995:12298..12514 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig4995 12299..12514 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4995.12990.1 >prot_L-elsbetiae_contig4995.12990.1 ID=prot_L-elsbetiae_contig4995.12990.1|Name=mRNA_L-elsbetiae_contig4995.12990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MKNGAGGEADRQTAATEKVAAALSVGGVALAPKSRADVEDTVDAAVQAAL
LWLLSGRGSGARTAGTAARALQAAAVHLAAYWLEPYRTVSRTTGCRTSRY
LESTVEDAAICSRLSWPPPCRCCRGGGCGTCVLWFVAQCYFGSRATKWSP
WGC* back to topmRNA from alignment at L-elsbetiae_contig4995:11307..12684- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig4995.12990.1 ID=mRNA_L-elsbetiae_contig4995.12990.1|Name=mRNA_L-elsbetiae_contig4995.12990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1378bp|location=Sequence derived from alignment at L-elsbetiae_contig4995:11307..12684- (Laminarionema elsbetiae ELsaHSoW15)
ACCGTAGCCGTTATTTTTACAGCACCTCTGGCGGGAGCTCCATGGATACA
TAATCTTTCATTAGCTTTTCTCACCAAGACTTGCCCCAAATATAACGTCG
ACCAGCCGAGGTGCTCGCCAAGAACGGCTCCGCGTCTGTCGTCGAAATGC
GGAAATGAGGAAGCGCCGGCATGAAGAACGGCGCCGGCGGTGAGGCGGAC
AGGCAAACGGCGGCGACAGAGAAGGTGGCAGCGGCTTTGTCCGTCGGTGG
GGTGGCGCTTGCTCCCAAATCCCGGGCGGACGTCGAGGACACGGTCGATG
CTGCGGTCCAGGCTGCTCTCCTGTGGCTTTTGAGCGGGAGAGGGAGCGGG
GCTAGGACGGCAGGGACGGCAGCTAGAGCGCTGCAGGTGCGTGGAAGAAT
GCTTGCTGCTTGGGTGGATGGGTGGGTAGGCGGCTTTCGAGTGGTTTGTC
CCTGTCTTCGGCCACTCAACGTCTTGGCTTTGTGCACAACCACCGCTTGA
AAAAAAACGAATTATCCAAATTGTACATCCTCCCATCATCTTCAGCTTAT
GCCCCCCCCCCTCCCCGCCGCCCCCTCGAATCGATTGGTTGTGCCCGAAT
TGACGATTGACAGGCGGCCGCCGTCCACCTTGCCGCCTATTGGTTGGAGC
CGTACCGCACCGTGTCGCGCACCACCGGGTGCCGTACCTCCCGCTATTTG
GAGTCGACCGTGGAGGATGCCGCCATCTGTTCACGGCTCTCTTGGCCTCC
CCCGTGCCGCTGCTGCCGCGGGGGCGGTTGCGGCACCTGTGTATTGTGGT
TTGTCGCGCAGTGTTACTTTGGTAGCAGGGCCACAAAGTGGTCGCCGTGG
GGCTGTTGAGGAGGTATTGCCTGACAGTTTCGTCGGGGTTTGTGTCGACG
TTGCCGCGACGGAGGGGGCGAGGGCTGGCAACGCCGATCCTGCTGCCACT
GCCGCCGATGCCTCGTCGCTCCTGCGCAAGATGAGTCGATGCGGCATCGT
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTATTATTGTTGCTGCCGGTGCC
GGTGCTGGTGCTGCCGTTGTTTGCTGCGGTTGTTGCTTTCCTTGCTCTCG
TGTTTTTGTTGTTTTCTTTGTTTGTGATCTTCTTGCTTTGGCGGTGCTAT
ATCGTTTTGCTCGTTGGCTGTCGTTGTCGCTTGGGCTATCGGCTATCATA
AGGCAATAGGATATTTTTTGTTGTTTCGTCTCGAGAGAGAAAAAGTAGGA
GATCGTTGTTTCCTTTCAAGAATGCATCGCGAGGCATGCCCTCATATGCT
AACCCTTCTATTTAGCTATTTAGTGCTAGAAGCCCGTTTGGCGACGATTT
GGCGACTCCTAACTTTGGCCTCTGTTTT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig4995:11307..12684- >mRNA_L-elsbetiae_contig4995.12990.1 ID=mRNA_L-elsbetiae_contig4995.12990.1|Name=mRNA_L-elsbetiae_contig4995.12990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig4995:11307..12684- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAACGGCGCCGGCGGTGAGGCGGACAGGCAAACGGCGGCGACAGA
GAAGGTGGCAGCGGCTTTGTCCGTCGGTGGGGTGGCGCTTGCTCCCAAAT
CCCGGGCGGACGTCGAGGACACGGTCGATGCTGCGGTCCAGGCTGCTCTC
CTGTGGCTTTTGAGCGGGAGAGGGAGCGGGGCTAGGACGGCAGGGACGGC
AGCTAGAGCGCTGCAGATGAAGAACGGCGCCGGCGGTGAGGCGGACAGGC
AAACGGCGGCGACAGAGAAGGTGGCAGCGGCTTTGTCCGTCGGTGGGGTG
GCGCTTGCTCCCAAATCCCGGGCGGACGTCGAGGACACGGTCGATGCTGC
GGTCCAGGCTGCTCTCCTGTGGCTTTTGAGCGGGAGAGGGAGCGGGGCTA
GGACGGCAGGGACGGCAGCTAGAGCGCTGCAGGCGGCCGCCGTCCACCTT
GCCGCCTATTGGTTGGAGCCGTACCGCACCGTGTCGCGCACCACCGGGTG
CCGTACCTCCCGCTATTTGGAGTCGACCGTGGAGGATGCCGCCATCTGTT
CACGGCTCTCTTGGCCTCCCCCGTGCCGCTGCTGCCGCGGGGGCGGTTGC
GGCACCTGTGTATTGTGGTTTGTCGCGCAGTGTTACTTTGGTAGCAGGGC
CACAAAGTGGTCGCCGTGGGGCTGTTGAGCGGCCGCCGTCCACCTTGCCG
CCTATTGGTTGGAGCCGTACCGCACCGTGTCGCGCACCACCGGGTGCCGT
ACCTCCCGCTATTTGGAGTCGACCGTGGAGGATGCCGCCATCTGTTCACG
GCTCTCTTGGCCTCCCCCGTGCCGCTGCTGCCGCGGGGGCGGTTGCGGCA
CCTGTGTATTGTGGTTTGTCGCGCAGTGTTACTTTGGTAGCAGGGCCACA
AAGTGGTCGCCGTGGGGCTGTTGA back to top
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