mRNA_L-elsbetiae_contig4995.12990.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4995.12990.1
Unique NamemRNA_L-elsbetiae_contig4995.12990.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4995.12990.1 vs. uniprot
Match: D8LHI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI7_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.500e-19
Identity = 64/111 (57.66%), Postives = 73/111 (65.77%), Query Frame = 3 
Query:  180 GAGGEADRQTAAT--EKVAAALSVGGVALAPKSRADVEDTVDAAVQAALLWLLSGRGSGARTAG--TAARALQAAAVHLAAYWLEPYRTVSRTTGCRTSRYLESTVEDAAI 500
            G  G+A    A T   K A   SVGGVA+ P+S ADV DTVDAAV+ ALLWLLSG   G R  G   A  A QAAAVHL A W+E Y+ +SRT G R SR+LEST EDAA+
Sbjct:  973 GGDGKAGAGAAGTGVRKEAEGFSVGGVAVVPESWADVGDTVDAAVEGALLWLLSGVRGGGRVGGXXAAETAQQAAAVHLVACWVERYQAMSRTIGRRGSRHLESTAEDAAV 1083
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BLAST of mRNA_L-elsbetiae_contig4995.12990.1 vs. uniprot
Match: A0A6H5JML9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.240e-16
Identity = 56/99 (56.57%), Postives = 64/99 (64.65%), Query Frame = 3 
Query:  210 AATEKVAAALSVGGVALAPKSRADVEDTVDAAVQAALLWLLSG--RGSGARTAGTAARALQAAAVHLAAYWLEPYRTVSRTTGCRTSRYLESTVEDAAI 500
            A   K A   SVGGV + P+S ADV DTVDAAV+A LLWLL     G G    GTA  A QAAAVHL A W+E Y+ +SRT G R S +LES  EDAA+
Sbjct:  522 AGLRKEAEGFSVGGVVVVPESWADVGDTVDAAVEAVLLWLLRSVRGGGGVDGGGTAETAQQAAAVHLVACWMERYQAMSRTAGRRASGHLESIAEDAAV 620
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4995.12990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHI7_ECTSI8.500e-1957.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JML9_9PHAE2.240e-1656.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4995contigL-elsbetiae_contig4995:11307..12684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog2880.D8LHI7
Preferred nameRPAP1
KEGG koko:K19496,ko:K20826
KEGG TC1.A.17.1.1,1.A.17.1.22
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030154,GO:0030880,GO:0032502,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0046483,GO:0048869,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription by RNA polymerase II
EggNOG OGsKOG4732@1,KOG4732@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021,ko04040
Exons2
Model size1151
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4995.12990.1prot_L-elsbetiae_contig4995.12990.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4995 11826..12514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816500.8698432-UTR-L-elsbetiae_contig4995:11306..118251622816500.8698432-UTR-L-elsbetiae_contig4995:11306..11825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4995 11307..11825 -
1691683604.9730647-UTR-L-elsbetiae_contig4995:11306..118251691683604.9730647-UTR-L-elsbetiae_contig4995:11306..11825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4995 11307..11825 -
1622816500.904664-UTR-L-elsbetiae_contig4995:12514..126841622816500.904664-UTR-L-elsbetiae_contig4995:12514..12684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4995 12515..12684 -
1691683605.0070908-UTR-L-elsbetiae_contig4995:12514..126841691683605.0070908-UTR-L-elsbetiae_contig4995:12514..12684Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4995 12515..12684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816500.882329-CDS-L-elsbetiae_contig4995:11825..120711622816500.882329-CDS-L-elsbetiae_contig4995:11825..12071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 11826..12071 -
1691683604.9853363-CDS-L-elsbetiae_contig4995:11825..120711691683604.9853363-CDS-L-elsbetiae_contig4995:11825..12071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 11826..12071 -
1622816500.8926802-CDS-L-elsbetiae_contig4995:12298..125141622816500.8926802-CDS-L-elsbetiae_contig4995:12298..12514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 12299..12514 -
1691683604.9958313-CDS-L-elsbetiae_contig4995:12298..125141691683604.9958313-CDS-L-elsbetiae_contig4995:12298..12514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4995 12299..12514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4995.12990.1

>prot_L-elsbetiae_contig4995.12990.1 ID=prot_L-elsbetiae_contig4995.12990.1|Name=mRNA_L-elsbetiae_contig4995.12990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MKNGAGGEADRQTAATEKVAAALSVGGVALAPKSRADVEDTVDAAVQAAL
LWLLSGRGSGARTAGTAARALQAAAVHLAAYWLEPYRTVSRTTGCRTSRY
LESTVEDAAICSRLSWPPPCRCCRGGGCGTCVLWFVAQCYFGSRATKWSP
WGC*
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mRNA from alignment at L-elsbetiae_contig4995:11307..12684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4995.12990.1 ID=mRNA_L-elsbetiae_contig4995.12990.1|Name=mRNA_L-elsbetiae_contig4995.12990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1378bp|location=Sequence derived from alignment at L-elsbetiae_contig4995:11307..12684- (Laminarionema elsbetiae ELsaHSoW15)
ACCGTAGCCGTTATTTTTACAGCACCTCTGGCGGGAGCTCCATGGATACA
TAATCTTTCATTAGCTTTTCTCACCAAGACTTGCCCCAAATATAACGTCG
ACCAGCCGAGGTGCTCGCCAAGAACGGCTCCGCGTCTGTCGTCGAAATGC
GGAAATGAGGAAGCGCCGGCATGAAGAACGGCGCCGGCGGTGAGGCGGAC
AGGCAAACGGCGGCGACAGAGAAGGTGGCAGCGGCTTTGTCCGTCGGTGG
GGTGGCGCTTGCTCCCAAATCCCGGGCGGACGTCGAGGACACGGTCGATG
CTGCGGTCCAGGCTGCTCTCCTGTGGCTTTTGAGCGGGAGAGGGAGCGGG
GCTAGGACGGCAGGGACGGCAGCTAGAGCGCTGCAGGTGCGTGGAAGAAT
GCTTGCTGCTTGGGTGGATGGGTGGGTAGGCGGCTTTCGAGTGGTTTGTC
CCTGTCTTCGGCCACTCAACGTCTTGGCTTTGTGCACAACCACCGCTTGA
AAAAAAACGAATTATCCAAATTGTACATCCTCCCATCATCTTCAGCTTAT
GCCCCCCCCCCTCCCCGCCGCCCCCTCGAATCGATTGGTTGTGCCCGAAT
TGACGATTGACAGGCGGCCGCCGTCCACCTTGCCGCCTATTGGTTGGAGC
CGTACCGCACCGTGTCGCGCACCACCGGGTGCCGTACCTCCCGCTATTTG
GAGTCGACCGTGGAGGATGCCGCCATCTGTTCACGGCTCTCTTGGCCTCC
CCCGTGCCGCTGCTGCCGCGGGGGCGGTTGCGGCACCTGTGTATTGTGGT
TTGTCGCGCAGTGTTACTTTGGTAGCAGGGCCACAAAGTGGTCGCCGTGG
GGCTGTTGAGGAGGTATTGCCTGACAGTTTCGTCGGGGTTTGTGTCGACG
TTGCCGCGACGGAGGGGGCGAGGGCTGGCAACGCCGATCCTGCTGCCACT
GCCGCCGATGCCTCGTCGCTCCTGCGCAAGATGAGTCGATGCGGCATCGT
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTATTATTGTTGCTGCCGGTGCC
GGTGCTGGTGCTGCCGTTGTTTGCTGCGGTTGTTGCTTTCCTTGCTCTCG
TGTTTTTGTTGTTTTCTTTGTTTGTGATCTTCTTGCTTTGGCGGTGCTAT
ATCGTTTTGCTCGTTGGCTGTCGTTGTCGCTTGGGCTATCGGCTATCATA
AGGCAATAGGATATTTTTTGTTGTTTCGTCTCGAGAGAGAAAAAGTAGGA
GATCGTTGTTTCCTTTCAAGAATGCATCGCGAGGCATGCCCTCATATGCT
AACCCTTCTATTTAGCTATTTAGTGCTAGAAGCCCGTTTGGCGACGATTT
GGCGACTCCTAACTTTGGCCTCTGTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4995:11307..12684-

>mRNA_L-elsbetiae_contig4995.12990.1 ID=mRNA_L-elsbetiae_contig4995.12990.1|Name=mRNA_L-elsbetiae_contig4995.12990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig4995:11307..12684- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAACGGCGCCGGCGGTGAGGCGGACAGGCAAACGGCGGCGACAGA
GAAGGTGGCAGCGGCTTTGTCCGTCGGTGGGGTGGCGCTTGCTCCCAAAT
CCCGGGCGGACGTCGAGGACACGGTCGATGCTGCGGTCCAGGCTGCTCTC
CTGTGGCTTTTGAGCGGGAGAGGGAGCGGGGCTAGGACGGCAGGGACGGC
AGCTAGAGCGCTGCAGATGAAGAACGGCGCCGGCGGTGAGGCGGACAGGC
AAACGGCGGCGACAGAGAAGGTGGCAGCGGCTTTGTCCGTCGGTGGGGTG
GCGCTTGCTCCCAAATCCCGGGCGGACGTCGAGGACACGGTCGATGCTGC
GGTCCAGGCTGCTCTCCTGTGGCTTTTGAGCGGGAGAGGGAGCGGGGCTA
GGACGGCAGGGACGGCAGCTAGAGCGCTGCAGGCGGCCGCCGTCCACCTT
GCCGCCTATTGGTTGGAGCCGTACCGCACCGTGTCGCGCACCACCGGGTG
CCGTACCTCCCGCTATTTGGAGTCGACCGTGGAGGATGCCGCCATCTGTT
CACGGCTCTCTTGGCCTCCCCCGTGCCGCTGCTGCCGCGGGGGCGGTTGC
GGCACCTGTGTATTGTGGTTTGTCGCGCAGTGTTACTTTGGTAGCAGGGC
CACAAAGTGGTCGCCGTGGGGCTGTTGAGCGGCCGCCGTCCACCTTGCCG
CCTATTGGTTGGAGCCGTACCGCACCGTGTCGCGCACCACCGGGTGCCGT
ACCTCCCGCTATTTGGAGTCGACCGTGGAGGATGCCGCCATCTGTTCACG
GCTCTCTTGGCCTCCCCCGTGCCGCTGCTGCCGCGGGGGCGGTTGCGGCA
CCTGTGTATTGTGGTTTGTCGCGCAGTGTTACTTTGGTAGCAGGGCCACA
AAGTGGTCGCCGTGGGGCTGTTGA
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