mRNA_L-elsbetiae_contig4973.12952.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4973.12952.1
Unique NamemRNA_L-elsbetiae_contig4973.12952.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4973.12952.1 vs. uniprot
Match: Q8QN61_ESV1K (EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN61_ESV1K)

HSP 1 Score: 150 bits (378), Expect = 9.840e-42
Identity = 89/204 (43.63%), Postives = 125/204 (61.27%), Query Frame = 1 
Query:    1 LSPVEALAKVSGMAMLTTAQIGSVVADVTMAQARSRLSLINERGLLTTDSQMGL-------INNNVIRNGERLKHWQRSYVAGILPVHLAKEFREKMDFENHLAVSVE-RPESDPSRIGYTIPVTW-----DVDNFHTNVNMSAMPFEEQAINILPEIEHLIDDDKCRQIVEQDAYLVNIVDMEWGRPFWLFDKIAEVLGSLES 573
            LSPV+AL K+S +AMLTT ++G    D +MAQAR  LS +N+RGL+TTDSQMG         + +V+     +  WQRSY++GIL   L  +F +KM   + +   ++   ES P  + + I VT      +  NF TNV M+  P       +LPE+EH++ +D C +IVE+DA LV IVD+ WGRPFWLF+K+ EVL  + S
Sbjct:   44 LSPVQALGKLSAVAMLTTVRVGDPGEDASMAQARPYLSEVNKRGLVTTDSQMGAKKHLSHHFDGHVLN--PPVTQWQRSYISGILAKGLGGKFAQKMRLVDGVDFFLDWHGESPPYALTHDINVTMYRQGDNEPNFFTNVPMATHPLAYSLSGVLPEVEHVLQNDTCVRIVEEDALLVQIVDLVWGRPFWLFEKVKEVLDEVLS 245
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4973.12952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN61_ESV1K9.840e-4243.63EsV-1-229 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4973contigL-elsbetiae_contig4973:342..929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size588
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816497.734332-CDS-L-elsbetiae_contig4973:341..9291622816497.734332-CDS-L-elsbetiae_contig4973:341..929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4973 342..929 -
1691683602.8109422-CDS-L-elsbetiae_contig4973:341..9291691683602.8109422-CDS-L-elsbetiae_contig4973:341..929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4973 342..929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4973.12952.1prot_L-elsbetiae_contig4973.12952.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4973 342..929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4973.12952.1

>prot_L-elsbetiae_contig4973.12952.1 ID=prot_L-elsbetiae_contig4973.12952.1|Name=mRNA_L-elsbetiae_contig4973.12952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
LSPVEALAKVSGMAMLTTAQIGSVVADVTMAQARSRLSLINERGLLTTDS
QMGLINNNVIRNGERLKHWQRSYVAGILPVHLAKEFREKMDFENHLAVSV
ERPESDPSRIGYTIPVTWDVDNFHTNVNMSAMPFEEQAINILPEIEHLID
DDKCRQIVEQDAYLVNIVDMEWGRPFWLFDKIAEVLGSLESSYER*
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mRNA from alignment at L-elsbetiae_contig4973:342..929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4973.12952.1 ID=mRNA_L-elsbetiae_contig4973.12952.1|Name=mRNA_L-elsbetiae_contig4973.12952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig4973:342..929- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCTCCTGTCGAGGCTTTGGCAAAAGTAAGTGGTATGGCGATGCTGAC
AACGGCGCAGATTGGTTCTGTTGTTGCAGACGTTACCATGGCGCAAGCGA
GGTCCCGCCTGTCTTTAATTAACGAGAGGGGTCTGTTGACAACAGACTCG
CAAATGGGTTTAATTAATAATAATGTAATACGCAACGGGGAAAGATTGAA
GCACTGGCAGCGATCGTATGTTGCGGGTATTTTACCTGTGCATTTGGCAA
AGGAGTTCAGGGAGAAAATGGATTTTGAAAATCATTTGGCGGTCAGCGTG
GAGCGACCCGAGAGCGATCCCTCTCGCATAGGGTATACCATCCCCGTAAC
CTGGGATGTGGACAATTTTCACACCAATGTAAATATGAGCGCCATGCCCT
TCGAGGAACAGGCGATAAACATTTTACCCGAAATCGAGCATCTTATAGAT
GACGACAAATGCCGACAGATTGTTGAACAAGACGCTTATCTTGTGAACAT
TGTGGACATGGAATGGGGTCGTCCCTTTTGGCTGTTTGATAAAATTGCAG
AAGTTCTCGGCAGCCTCGAATCGTCGTACGAGCGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4973:342..929-

>mRNA_L-elsbetiae_contig4973.12952.1 ID=mRNA_L-elsbetiae_contig4973.12952.1|Name=mRNA_L-elsbetiae_contig4973.12952.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig4973:342..929- (Laminarionema elsbetiae ELsaHSoW15)
CTTTCTCCTGTCGAGGCTTTGGCAAAAGTAAGTGGTATGGCGATGCTGAC
AACGGCGCAGATTGGTTCTGTTGTTGCAGACGTTACCATGGCGCAAGCGA
GGTCCCGCCTGTCTTTAATTAACGAGAGGGGTCTGTTGACAACAGACTCG
CAAATGGGTTTAATTAATAATAATGTAATACGCAACGGGGAAAGATTGAA
GCACTGGCAGCGATCGTATGTTGCGGGTATTTTACCTGTGCATTTGGCAA
AGGAGTTCAGGGAGAAAATGGATTTTGAAAATCATTTGGCGGTCAGCGTG
GAGCGACCCGAGAGCGATCCCTCTCGCATAGGGTATACCATCCCCGTAAC
CTGGGATGTGGACAATTTTCACACCAATGTAAATATGAGCGCCATGCCCT
TCGAGGAACAGGCGATAAACATTTTACCCGAAATCGAGCATCTTATAGAT
GACGACAAATGCCGACAGATTGTTGAACAAGACGCTTATCTTGTGAACAT
TGTGGACATGGAATGGGGTCGTCCCTTTTGGCTGTTTGATAAAATTGCAG
AAGTTCTCGGCAGCCTCGAATCGTCGTACGAGCGCTAGCTTTCTCCTGTC
GAGGCTTTGGCAAAAGTAAGTGGTATGGCGATGCTGACAACGGCGCAGAT
TGGTTCTGTTGTTGCAGACGTTACCATGGCGCAAGCGAGGTCCCGCCTGT
CTTTAATTAACGAGAGGGGTCTGTTGACAACAGACTCGCAAATGGGTTTA
ATTAATAATAATGTAATACGCAACGGGGAAAGATTGAAGCACTGGCAGCG
ATCGTATGTTGCGGGTATTTTACCTGTGCATTTGGCAAAGGAGTTCAGGG
AGAAAATGGATTTTGAAAATCATTTGGCGGTCAGCGTGGAGCGACCCGAG
AGCGATCCCTCTCGCATAGGGTATACCATCCCCGTAACCTGGGATGTGGA
CAATTTTCACACCAATGTAAATATGAGCGCCATGCCCTTCGAGGAACAGG
CGATAAACATTTTACCCGAAATCGAGCATCTTATAGATGACGACAAATGC
CGACAGATTGTTGAACAAGACGCTTATCTTGTGAACATTGTGGACATGGA
ATGGGGTCGTCCCTTTTGGCTGTTTGATAAAATTGCAGAAGTTCTCGGCA
GCCTCGAATCGTCGTACGAGCGCTAG
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