mRNA_L-elsbetiae_contig497.12948.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 75.5 bits (184), Expect = 5.640e-10 Identity = 55/160 (34.38%), Postives = 71/160 (44.38%), Query Frame = 1 Query: 1960 CLPEFTQDGFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNPAVAGSDMDCRTKIRTCLADPVCAPCATNADPDGTCD--NAHWTCSELGDHFC---CVVGD--------------SCRDNTLLVDFLGCVTREQGCQLGDDICDIE 2382 C ++ +DGFCD NN+ SC +DGGDCCE +C DGP++ C + GF CL+P DC T + C N DG CD N + +C G C CV G +C D L+ +F C G LGD CD E Sbjct: 87 CHEDWAKDGFCDLVNNHPSCDYDGGDCCECSCIDGPDYGCGSI-----GFACLDP-------DCGNTTETAPENTTCEESWMN---DGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFSCLDPACFDPALVAEFPDCDAGWLG--LGDGFCDSE 229
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: A0A6H5JE55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE55_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 6.930e-9 Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1 Query: 2149 CRTKIRTCLADPVCAPCATNADPDGTCDN-AHWTCSELGDHFCCVVGDSCRDNTLLVDFLGCVTREQGCQLGDDICDIED 2385 C +++ C+AD C C N D CD+ A TCS + D+ CCV GDSC +NTL+V ++ C + GC + +D+CD D Sbjct: 90 CNAEVQACVADQDCFTCVQN---DAVCDSSATATCSGVMDYLCCVFGDSCSENTLVVAYIDCTLDDYGCSVDNDLCDTGD 166
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: A0A7S1TXY0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXY0_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.210e-7 Identity = 39/110 (35.45%), Postives = 52/110 (47.27%), Query Frame = 1 Query: 1957 GCLPEFTQDGFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNP--------AVAGSDMDCRTKIRTCLAD--PVCAPCATNADPDGTCDNAHWTCSE 2256 G +T DG+CD E N +CG+DGGDCCE+TC G C G G+NC+NP A+ + I C D CA +AD C A +TC++ Sbjct: 490 GLFETYTADGYCDPEMNTDACGWDGGDCCEQTCVSGSPFTC-----GVNGYNCVNPTGDCDFATALGNGVCNLEANIDECSWDGGDCCASTCNHAD----CATATFTCTD 590
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.750e-7 Identity = 30/67 (44.78%), Postives = 37/67 (55.22%), Query Frame = 1 Query: 1948 ICDGCLPEFTQDGFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNPAVAGSDMD 2148 I + C +GFCD +NNN +C +DGGDCCE TCED PN C GF C++P D D Sbjct: 196 IVENCDSVAVGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRW----SGFACIDPEAPCVDED 258
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: A0A383EJG0_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383EJG0_9ZZZZ) HSP 1 Score: 63.2 bits (152), Expect = 3.100e-7 Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1 Query: 1945 TICDGCLPEFTQDGFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGG--FNCLNPAV 2130 + CDG + DG+CD+ NNN +CG+DGGDCCE+TC DG ++ CN G F+C +P V Sbjct: 32 SACDG-NSSWVGDGYCDSNNNNQACGYDGGDCCEQTCVDG-DYTCNSGAASGWGNIFDCNDPNV 93
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 5.080e-7 Identity = 33/84 (39.29%), Postives = 44/84 (52.38%), Query Frame = 1 Query: 1960 CLPEFTQDGFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNPAVAGSDMDCRTKIRTCLADPVCAPCATNA 2211 C+ + DG+CD ENNNA C +DGGDCCE TC D ++ G GF+CL+P+ T + C P PC+ A Sbjct: 1972 CIGVYVTDGWCDLENNNAECNWDGGDCCECTCVD------SQYECGIQGFSCLDPSA--------TDLYDCGETPAATPCSAEA 2041
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 1.340e-6 Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1 Query: 1933 DMRDTICDGCLPEFTQDGFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNPAVAGSDMD 2148 D+ + + C DG+CD +NNNA+C +DGGDCCE TCE PN+ C G GF C++P D D Sbjct: 169 DITVDVDESCDAVGMGDGYCDMDNNNAACAYDGGDCCECTCE--PNNKCG----GRSGFACIDPGAPCVDDD 234
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: F0YPV8_AURAN (LNR domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPV8_AURAN) HSP 1 Score: 62.8 bits (151), Expect = 3.650e-6 Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 1 Query: 1939 RDTICDGCL---PEFTQDGFCDT-ENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNPA 2127 R T+ CL P + DG CD N+ +CG+DGGDCCE TCEDGP H C G + CL+PA Sbjct: 633 RPTVPSTCLVPHPAYVGDGACDPGAYNSEACGYDGGDCCESTCEDGPVHAC-----GRTAYACLDPA 694
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 5.510e-6 Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1 Query: 1948 ICDGCLPEFTQDGFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNPAVAGSDMD 2148 + + C DG+C+ +NNN +C +DGGDCCE TCED PN+ C F C++PA D D Sbjct: 210 MVESCDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRW----SSFACIDPAAPCVDDD 272
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.210e-5 Identity = 44/137 (32.12%), Postives = 59/137 (43.07%), Query Frame = 1 Query: 1984 GFCDTENNNASCGFDGGDCCEETCEDGPNHICNEVIDGAGGFNCLNPAVAGSDMDCRTKIR---TCLADPVCAPCATNADPDGTCDNAHWTCSELGDHFCCVVGD-SCRDNTLLVDFLGCVTREQGCQLGDDICDIE 2382 G CD N ASCG+DGGDCC TC DGP H+C + +C +PAV SD C ++ C + A C + C E G D +C D L+ +F C ++GD C+ E Sbjct: 43 GNCDAALNVASCGYDGGDCCSCTCNDGPLHLCADSDFDCMYPDCGDPAVTSSDAVCYEDVQGDGMCNEENNSAACGYDGGDCCECSCVDGPLFECGSFSIFDCRDPACYDPALVAEFPDCTG--DWFKIGDGACNPE 177 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig497.12948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig497.12948.1 >prot_L-elsbetiae_contig497.12948.1 ID=prot_L-elsbetiae_contig497.12948.1|Name=mRNA_L-elsbetiae_contig497.12948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1006bp VKDCLDLSNDGSKCSLSIADGHNLDLSQCRISGTELQGLEKCFHKFIDNNback to top mRNA from alignment at L-elsbetiae_contig497:3511..38354+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig497.12948.1 ID=mRNA_L-elsbetiae_contig497.12948.1|Name=mRNA_L-elsbetiae_contig497.12948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=34844bp|location=Sequence derived from alignment at L-elsbetiae_contig497:3511..38354+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig497:3511..38354+ >mRNA_L-elsbetiae_contig497.12948.1 ID=mRNA_L-elsbetiae_contig497.12948.1|Name=mRNA_L-elsbetiae_contig497.12948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6036bp|location=Sequence derived from alignment at L-elsbetiae_contig497:3511..38354+ (Laminarionema elsbetiae ELsaHSoW15)back to top |