mRNA_L-elsbetiae_contig4966.12945.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4966.12945.1
Unique NamemRNA_L-elsbetiae_contig4966.12945.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4966.12945.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.060e-12
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 VFKGVTEEGCREEMSCALRCANDNRRAGVNSLAPVETCLLQ 123
            V+KGV++EGCR EM+CALRCA+DNRR GV SLAPVETCL+Q
Sbjct:  500 VYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLVQ 540
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4966.12945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCL4_ECTSI1.060e-1278.05ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4966contigL-elsbetiae_contig4966:10252..11857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D8LCL4
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons2
Model size327
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816496.930374-CDS-L-elsbetiae_contig4966:10252..104531622816496.930374-CDS-L-elsbetiae_contig4966:10252..10453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4966 10253..10453 -
1691683602.1913614-CDS-L-elsbetiae_contig4966:10252..104531691683602.1913614-CDS-L-elsbetiae_contig4966:10252..10453Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4966 10253..10453 -
1622816496.9410279-CDS-L-elsbetiae_contig4966:11734..118571622816496.9410279-CDS-L-elsbetiae_contig4966:11734..11857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4966 11735..11857 -
1691683602.205436-CDS-L-elsbetiae_contig4966:11734..118571691683602.205436-CDS-L-elsbetiae_contig4966:11734..11857Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4966 11735..11857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4966.12945.1prot_L-elsbetiae_contig4966.12945.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4966 10253..11857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4966.12945.1

>prot_L-elsbetiae_contig4966.12945.1 ID=prot_L-elsbetiae_contig4966.12945.1|Name=mRNA_L-elsbetiae_contig4966.12945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
VFKGVTEEGCREEMSCALRCANDNRRAGVNSLAPVETCLLQMGKASLARH
RVRSLRQRRQPGPVPSHSPLPTAAAPPPPPPPLPPSSPPPAAAAAGASPP
PVAAADAP
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mRNA from alignment at L-elsbetiae_contig4966:10252..11857-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4966.12945.1 ID=mRNA_L-elsbetiae_contig4966.12945.1|Name=mRNA_L-elsbetiae_contig4966.12945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1606bp|location=Sequence derived from alignment at L-elsbetiae_contig4966:10252..11857- (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTAAGGGGGTCACGGAGGAGGGGTGCAGGGAGGAGATGAGCTGCGC
GCTGAGGTGCGCGAACGATAACCGCCGGGCCGGGGTGAACTCTCTCGCGC
CCGTCGAGACGTGCCTCCTGCAGGTACGTGAGAGCACAATAGGTAGAGAG
CCATAGTTAGAGGGAAGAGAGAGGGGGGGGGCAGAGAAAAGAGGTGGCCA
ATGGACGGAGGGAAAGAGGCAGAGAGGCAGAGAGAGAGAGAGAGGGAGAG
AGAGGGGGGGAGAGAGACAGCATGGAAGTCCGGGTGGGTCACACACGCCC
CCCCTCCTTTTCTGTTTGAAAATCCCCCGTGGCCACTCTCACTCTTGATC
TCGGCACGCCGCGGCACCGCCAGAGTAACCACCGTTGGGTCACGCCTTAT
ATAGCAGCACATGTCTACCTTCAGCAGCGAGTTAAAGAGCTTGGAAGACG
TGCACACAGAGTCAGCCTCTTCGGAAAACGCTTAGTGGTGGAAACCCAAC
CCTTACGGCAATACATGCCAGGCATTTGCTTGCGCACATACGGTGGTTTG
TTTGGGGTAGCATGGAAGACTCAGTTTCCAGCACTCATTCCTGGCATTTG
GGCAGAGCATGCCGTCTCACGGCGGGATGATTTTTACGCATACCTATGCC
GTCTCGCGTTCCTCTCTTTCCCAGCTTCTCTAATGTTGATAAAAGTATCA
CTATTTACCACTAATATTGTATTTTCTCCTCAAAAGCAGTAACCCACATA
TATTAAACCAGCATTTTGATTGAGTTCAACAATGCGATGTGTTCCTATTT
TGAAGTAGATGACAACATTATGGCCTCACCGCGGGCTCTACCCGCCTGAA
TAATTGTTGGCCGACCTCGCAAATCTTAAATCTTTGCAGGGGAGATGCTG
AACTCTTCTGATATTTTAGGTTGTTTTTCTGCTCGCTTCGCCAAATATTA
CGTCTCTGTATAGGAATACCGCTTGAACCCCATATCGAGTCCTTGCTCTA
GTGTGGGGTAGGTTCCATATTTGATTCATTGCTTTTTTTTTAAAAGTACA
TCGCTAGCGCACAGGGAAGCGTCTCCTTCGTTGCCTCCTGCTTTTTTGTT
TTCTCTCTGTGGCACCGCTTTCTCTGCCGCACGCCGCGCTCTATGTAAGC
GATCCGGTCGCATCGCACGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CGNNNNNNNNNTTTTTCTCCTTCCCGCGCCGGCCGCCGCGCTCTGTTGTG
GGGGGCCGGGGGCCCCGCCCCCCCCCCCCCCCCCCCCCCACCCACCCCAC
CCACCCCACCTCCCCTCGTGCGCTTCGTGCCCGTGCCGGTGCCGGTGCGC
GCAGATGGGGAAGGCCTCGCTGGCCAGACATCGAGTGCGCTCTCTCCGGC
AGCGGCGGCAGCCCGGCCCCGTGCCGAGCCACTCGCCGCTACCGACGGCT
GCCGCGCCGCCGCCGCCGCCGCCACCACTGCCACCGTCATCACCACCACC
GGCGGCAGCAGCGGCGGGCGCGTCTCCTCCCCCCGTTGCCGCGGCCGACG
CACCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4966:10252..11857-

>mRNA_L-elsbetiae_contig4966.12945.1 ID=mRNA_L-elsbetiae_contig4966.12945.1|Name=mRNA_L-elsbetiae_contig4966.12945.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig4966:10252..11857- (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTAAGGGGGTCACGGAGGAGGGGTGCAGGGAGGAGATGAGCTGCGC
GCTGAGGTGCGCGAACGATAACCGCCGGGCCGGGGTGAACTCTCTCGCGC
CCGTCGAGACGTGCCTCCTGCAGGTGTTTAAGGGGGTCACGGAGGAGGGG
TGCAGGGAGGAGATGAGCTGCGCGCTGAGGTGCGCGAACGATAACCGCCG
GGCCGGGGTGAACTCTCTCGCGCCCGTCGAGACGTGCCTCCTGCAGATGG
GGAAGGCCTCGCTGGCCAGACATCGAGTGCGCTCTCTCCGGCAGCGGCGG
CAGCCCGGCCCCGTGCCGAGCCACTCGCCGCTACCGACGGCTGCCGCGCC
GCCGCCGCCGCCGCCACCACTGCCACCGTCATCACCACCACCGGCGGCAG
CAGCGGCGGGCGCGTCTCCTCCCCCCGTTGCCGCGGCCGACGCACCGATG
GGGAAGGCCTCGCTGGCCAGACATCGAGTGCGCTCTCTCCGGCAGCGGCG
GCAGCCCGGCCCCGTGCCGAGCCACTCGCCGCTACCGACGGCTGCCGCGC
CGCCGCCGCCGCCGCCACCACTGCCACCGTCATCACCACCACCGGCGGCA
GCAGCGGCGGGCGCGTCTCCTCCCCCCGTTGCCGCGGCCGACGCACCG
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