prot_L-elsbetiae_contig4962.12937.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4962.12937.1
Unique Nameprot_L-elsbetiae_contig4962.12937.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length550
Homology
BLAST of mRNA_L-elsbetiae_contig4962.12937.1 vs. uniprot
Match: A0A6H5JTZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ5_9PHAE)

HSP 1 Score: 502 bits (1292), Expect = 3.400e-164
Identity = 278/539 (51.58%), Postives = 355/539 (65.86%), Query Frame = 0
Query:   30 KVFENGSSSSVAVTTGDVLWRQFVAYEHNVTWLTSNLPAEQTVGSDAFSFKVFDSHSNYSVPAVINITVVTGVLALSKEDLWKCYEDTDCDVRLFGSAIDDNDGSLSVTVTGVN--GSFFDPVTNGFIEVGYTLSNIITYPYENGASVTYRSPTDFFTAPATEWNGTQLPPLSGSILISFYVSVELGSARISSTEVTQELKVVNVNDNSTIACEEGILQTQGSGIVDADLTFDYPRPDRLFIYNFSITEEDRGVDPIRVVVEVESGYLTLNETLKSRVSFELRCSGTRDWQCRGDGTNTRRMVFIGAPEDVQNVLNGMLFVSYERNEMDNMTVTIYDGFESDCIWEFSTSSLRPACFSSSCSILIDVGETWLGEYTEPLFV-IHVYVVLVLLMLFSALMAPLVLRFLRLCKRVFCFFYRYGKHEQFEVRQAEQKGPEIVVDQITPTAVNTT---SRRKPAKIPAGRTETKGAVDVHKLSLAKAKRWY-------------SFWGLCVRRVDRGSS--VAATEDMPRGHIEPSDELTWEE 547
            +VF NGS S+VAVT  + LWR  VAYEH+  WL SN P +QTVG D F+FKVFDSH N+SVPA INITV++GV A+S+ ++W C+ED +C+V LFGS   DN G++S+T++GV   G+ FD   N  +EVG TLS+ + YPY+ GASV Y+   DFFT P T+WNGTQL      ++++FY S+ELG  RI S EV+QELKV NV+D S I C + ILQT  +G+VD D   D  RPDRLFIYNFSITE+D GVDP+RV V  E GYLTLN+TL+SRVSF   CSGT +W+CR DG  ++ M+FIGAPEDVQ+VLNGMLFVSYE N +DNMTVTI+DGFE DCIWEF+T S+RP C SSSCSI I+V ETWL + T P  + + +    VL  L SAL   +V + L+  K  FC  +  G+ +    +  E    E+     TP  ++T    + R PA IPAGRT TKGA      + A+A R               S W   +RR  RG+   +   +  PRG IE S ++ WE+
Sbjct:  478 QVFNNGSVSNVAVTNEEPLWRPMVAYEHDSVWLRSNSPTDQTVGDDMFTFKVFDSHWNFSVPAAINITVLSGVSAISQSEIWWCFEDVNCEVALFGSTKSDNAGNMSITISGVPVYGNLFDAGINMPVEVGSTLSSPVKYPYDEGASVVYQPQMDFFTDPTTQWNGTQLLERD-DVIVTFYASIELGGTRIFSPEVSQELKVRNVDDQSAIRCGDSILQTLATGVVDDDAILDDVRPDRLFIYNFSITEKDDGVDPVRVSVTAEYGYLTLNDTLRSRVSFVNPCSGTHNWRCRSDGVYSQNMIFIGAPEDVQHVLNGMLFVSYESNVVDNMTVTIHDGFEGDCIWEFATYSVRPTCHSSSCSITINVTETWLNDDTGPALISVTITEFFVLFALISALGGLVVSKCLKSLK--FCLCFCCGRRKHRRSKGGESNKMEVAATAPTPNHMSTVLNNAHRTPANIPAGRT-TKGAASRQVDTQARASRQVGTSPQARGCPLLGSGW---LRRDQRGAGREITTAQGAPRG-IERSGDIPWED 1008          
BLAST of mRNA_L-elsbetiae_contig4962.12937.1 vs. uniprot
Match: A0A835ZFY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFY4_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.810e-43
Identity = 107/337 (31.75%), Postives = 171/337 (50.74%), Query Frame = 0
Query:   72 VGSDAFSFKVFDSHSNYSVPAVINITVVTGVLAL--SKEDLWKCYEDTDCDVRLFGSAIDDNDGSLSVTVTGVN--GSFFDPVTNGFIEVGYTLSNIITYPYENGASVTYRSPTDFFTAPATEWNGTQLPPLSGSILISFYVSVELGSARISSTEVTQELKVVNVNDNSTIACEEGILQTQGSGIVDADLTFDYPRPDRLFIYNFSITEEDRGVDPIRVVVEVESGYLTLNETLKSRVSFELR--CSGTRDWQCRGDGTNTRRMVFIGAPEDVQNVLNGMLFVSYERNEMDNMTVTIYDG----FESDCIWE--FSTSSLRPACFSSSCSILIDVGE 396
            +G D F++   D+ +  SVPA +NIT+V+ + +   +    W   ED +  +RL+G+   D   +L+  +T V   G   D  T+  +  G  L+ +++ PY  G  V YR P DFFT P    +G +L   +G++  S+YV++  G A   + E    L VVNVND + +AC +       +G    D  F+ P  DR F+  F++ + D GVD IRV V    G ++L       + F     C G RDW+C G+G N   + F+  P      L+G+ + S      D +TVT+YDG      +DCI +  F+++S R  C  S+C++ + V +
Sbjct:  555 IGFDGFTYAGADNATRASVPAAVNITLVSPLHSGDGTANKTWTVPEDAESSLRLYGTDTSDAPRALAFHITAVPAVGDLLDAATDRKLRAGDKLTALLSAPYGAGVEVKYRPPADFFTTPTVNASGAELAG-TGAMNFSYYVALA-GDALYRAPEAAAVLSVVNVNDATALACPDAEFSVAAAGKYAYDTDFETPVADRAFLRGFALGDADAGVDLIRVTVAATKGVVSLQPDQLGNLDFTSTALCFGERDWRCAGNGINDATVTFVAPPAAAAAALDGLRYQSDAAGVTDAVTVTVYDGSGGALGADCIADAHFTSNSTRDGCLRSTCAVTVTVAK 889          
BLAST of mRNA_L-elsbetiae_contig4962.12937.1 vs. uniprot
Match: A0A482SWN2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SWN2_9ARCH)

HSP 1 Score: 92.8 bits (229), Expect = 5.240e-17
Identity = 83/304 (27.30%), Postives = 133/304 (43.75%), Query Frame = 0
Query:   72 VGSDAFSFKVFDSHSNYSVPAVINITVVTGVLALSKEDLWKCYEDTDCDVRLFGSAIDDNDGSLSVTVTGVNGSFFDPVTNGFIEVG--YTLSNIITYPYENGASVTYRSPTDFFTAPATEWNGTQLPPLSGSILISFYVSVELGSARISSTEVTQELKVVNVNDNSTIACEEG-ILQTQGSGIVDADLTFDYPRPDRLFIYNFSITEEDRGVDPIRVVVEVES-GYLTLNET----LKSRVSFE--LRCSGTRDWQCRGDGTNTRRMVFIGAPEDVQNVLNGMLFVSYERNEMDNMTVTIYDG 365
            + +D FS+ V DS    S+ +   + V    ++++ +++W   E T                S ++TV G++ S    V    I+    Y +SN+      +   V Y    +FFT+P   WNG  +P   G +         L     SS    Q ++VVNVND ++I  + G    T   G V    T DY     +      +T+ D GVDP+ V +   + G LTLN T        V F     C+    W+C G   ++  M F+ +P  +Q +LNGM ++S   +  D++T+ I DG
Sbjct:   10 ITTDYFSYGVIDSTGRKSLTSQAFLEV-NSAISINAKNIWTVREST----------------STTLTVQGIDTSDSPRVLQYNIDHAPVYGVSNLTA----DHLKVVYCGQANFFTSPNMTWNGQVIP---GHVPFDHVFLTALTQDGASSMPTKQLIQVVNVNDPTSITIDGGQSFITHAFGGVTGK-TADYSE---ITFQGIKVTDPDLGVDPVHVEISTSNQGRLTLNRTSLRLFSDYVDFSSLTLCNRLASWRCSGYAVDSTNMSFVTSPPILQQLLNGMTYISLIPDVTDSITIKISDG 285          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4962.12937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JTZ5_9PHAE3.400e-16451.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZFY4_9STRA4.810e-4331.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SWN2_9ARCH5.240e-1727.30Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 431..549
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 407..430
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..406
NoneNo IPR availableTMHMMTMhelixcoord: 408..430

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4962contigL-elsbetiae_contig4962:9683..12663 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4962.12937.1mRNA_L-elsbetiae_contig4962.12937.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4962 8850..13291 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4962.12937.1 ID=prot_L-elsbetiae_contig4962.12937.1|Name=mRNA_L-elsbetiae_contig4962.12937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=550bp
MKNRGKQQYGAPCNACAGGNSEKSCFQAEKVFENGSSSSVAVTTGDVLWR
QFVAYEHNVTWLTSNLPAEQTVGSDAFSFKVFDSHSNYSVPAVINITVVT
GVLALSKEDLWKCYEDTDCDVRLFGSAIDDNDGSLSVTVTGVNGSFFDPV
TNGFIEVGYTLSNIITYPYENGASVTYRSPTDFFTAPATEWNGTQLPPLS
GSILISFYVSVELGSARISSTEVTQELKVVNVNDNSTIACEEGILQTQGS
GIVDADLTFDYPRPDRLFIYNFSITEEDRGVDPIRVVVEVESGYLTLNET
LKSRVSFELRCSGTRDWQCRGDGTNTRRMVFIGAPEDVQNVLNGMLFVSY
ERNEMDNMTVTIYDGFESDCIWEFSTSSLRPACFSSSCSILIDVGETWLG
EYTEPLFVIHVYVVLVLLMLFSALMAPLVLRFLRLCKRVFCFFYRYGKHE
QFEVRQAEQKGPEIVVDQITPTAVNTTSRRKPAKIPAGRTETKGAVDVHK
LSLAKAKRWYSFWGLCVRRVDRGSSVAATEDMPRGHIEPSDELTWEETD*
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