mRNA_L-elsbetiae_contig4960.12934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4960.12934.1
Unique NamemRNA_L-elsbetiae_contig4960.12934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4960.12934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4960contigL-elsbetiae_contig4960:5029..7919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816495.9960914-CDS-L-elsbetiae_contig4960:5029..52341622816495.9960914-CDS-L-elsbetiae_contig4960:5029..5234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4960 5030..5234 -
1691683601.512623-CDS-L-elsbetiae_contig4960:5029..52341691683601.512623-CDS-L-elsbetiae_contig4960:5029..5234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4960 5030..5234 -
1622816496.008555-CDS-L-elsbetiae_contig4960:7770..79191622816496.008555-CDS-L-elsbetiae_contig4960:7770..7919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4960 7771..7919 -
1691683601.522442-CDS-L-elsbetiae_contig4960:7770..79191691683601.522442-CDS-L-elsbetiae_contig4960:7770..7919Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4960 7771..7919 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4960.12934.1prot_L-elsbetiae_contig4960.12934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4960 5030..7919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4960.12934.1

>prot_L-elsbetiae_contig4960.12934.1 ID=prot_L-elsbetiae_contig4960.12934.1|Name=mRNA_L-elsbetiae_contig4960.12934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
FTVRESWCWFRLYFTRTGGMRGGTCVSLKEKAIRHALGGKAQDVPAEKIC
SANTCAKTAFASSLERATATGQDDIYGAGDNDGRPEASESPAFTQAAAQS
CFEVIEAPPNVGRTVSVK
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mRNA from alignment at L-elsbetiae_contig4960:5029..7919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4960.12934.1 ID=mRNA_L-elsbetiae_contig4960.12934.1|Name=mRNA_L-elsbetiae_contig4960.12934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2891bp|location=Sequence derived from alignment at L-elsbetiae_contig4960:5029..7919- (Laminarionema elsbetiae ELsaHSoW15)
TTCACGGTTCGCGAGTCCTGGTGCTGGTTCAGATTATACTTCACTCGTAC
TGGGGGTATGAGAGGGGGTACATGCGTATCTCTGAAGGAGAAAGCAATAA
GGCATGCGTTGGGGGGAAAGGCGCAAGATGTCCCGGCGGAAAAAATTTGG
TGAGTTGTGTCATGTATATTAGATATGTACAAATGTCAGCAGTGTACGTC
CCGTCTATGGAAATATCGTTCCAGAGGGATCTGTTGTAGGCATATGTTTG
CATGTTTTTCTTTCAATATGTTCATAGAACGGCCGCCCCGCCTTCACGGG
GCGGTGGGGCCAGAAGATTGTCGACGTGGAGAACTGTTGACGCAGAGTAC
ATAATAGATATGTAGGGGTTCGTACACGCGTCTCGGGAAGCAGAGAGTAT
GTAGCATGCCATGTGGCATTGGAGCATGATGGGCAGAAGATAACCTCAAA
TTTTTTAAATAATCCGCGTGTTATATTGGGAGTGGGTGTTGTCGAGCGGG
GACATGTGTCATAGCACGCAGTGCGCACGCTACCAAGGAAGTTATCCCAC
TAATAATAACGACACAGCAGTCGTTGCCGCCTACCGTAGGTGACTATATG
AAGTTATGCAGCATTTTATTTACGGAAACACCCCTCGTCCATACACAAGC
CCTGGTGTTTAGCGTTTACACCAGCGGAGTAATAAACTTAGGTTTCAGTT
GGAGGTAGACGCGAAAAACCTCGGCCTACGCTAGGTTTCCGGCCTTTTGG
TTCACCACGGCGGTCGGCCTAACACGCACCCTAACCACCCTAAACCCTAA
CCCTAACCCACACCCACGCACCAGGCTAGGTTGGTGTGCCGGGTTTAGGC
CTAGGGCGCTGTACCGAGCTACTGGTGTATATAAGACTTGACCCCAGGGT
TGGTGTATATTTATACGTGCTGCGTTGTAGGTGCATGTATGTATCTTCAC
ATTAAAACCGTTCCGATCTCTCCATCCAGTACCTCTCAATGTCCGTACTA
TTCCAACACTTGATGCGGTCAATTCCCGTGTGTTATAAGGTAAAAGGTTA
ACCAAGTACTCGGCTGAGAGTACATCTTATAACACGTGGTCACAGGCTAA
CTTATACCCAAGAAAGGTACACGAAAAATAAAATGGACCCGAAGGGCCAG
CAAAGCAAAATAAAACAGGTGTCAAATCTGGAGCCCTTCGCTCCTCTCTA
CACGCTATATGAGGTAAAACAAAACTGGAACAGCGAACACCACTATCTTG
GTACCCCTGCCCCAACAAAGCCGGGGGGTTCCAGGCCGGGTTCTTGCCGG
CCAGGCCCGCACAGGTCTACATAGTCCTCCCCCCGATTGTACCTGGCGTT
ATTTTCACGTATTCACACGCCAACGTATACACACAAGCCATTCGATCATA
CACCGCTGGTATGCAAACAAACACAGACCAGATTGTAGGTGGAGGACGTA
GACAACCCTGCTGGAAATGACGCGGCTGAGACGGCGCCAGCTACATCTGC
GCAGCGCCTTCACGCTCGATCGCGTCATTTTTTCCGAAAGACCCCGCCGC
CGCCAAGCCGAGCAAGGTGATAACCCACCAGCTATGGGTATGACATATAA
TGTGAAGCATTGGAGGATGACTCTCACGGGGCCCCCACAAAAAACCGATG
TTCTTGGAGGTAGTCCTGAAGCGACGTATGGACCAGAGTTCAAAAGCTGG
ATGGCATTTCTTCTCGCCCGGGGCTGCTTTTTTAGGCTGTTGACGAGCAC
ATATATACACAAATTCGGGCACGAATGTGCTGATGCCTGGCGACGCCAAG
TGCTGTGGCCATGACCCGCACCAACTCAACGCTTGCGCGGCATATGCCAC
CCTCACGAAGCCCCTCCTTCCGCTGCTTGGATGCATCGTGGATATATTGC
TCGCATCGTAGCAGCAACAGCAAACGACTTCCCCAACAATCCGTCGCTCG
ACCAATAGATCTAGTATCCTTTGTGCCTTTTGTGCGTATTTCGTGGCAGC
GGCATTCGCGAAACAATTAAAAAAAAACAGGCCTGGAGCAGCTGACCGCC
GGGCAAGCCTACGGCGGCGCTGAAGAGAATTGCGATGCTAGCTCACTTGC
TGGGGGATGCGGGAGGGGAGCCTTGGTTAATTAACCGCCACCTCCACGCC
GTCGACCCGTTGAAAAAAACGTTGCACGTACATTCTAGTGTGCCGTGGCC
ATTGGAGCGCCGGTGAAATGCCGTCCCATTGAATCGGTTGGCGGGGTGTT
GTATTGTACTTTATGCGTTTGTGCGTGTGTGCCATCTTGCATTGCGACCC
CACACAAAATGGCAAGTAATGCACGAACGTACTGTCACTAAAGAGCCTTT
TCACCGGTCGAAACTTGCTTCTGTCGGCCTGTTCGTTACAAAGGTTTGAT
CATCTCGGCGCTAACATAACGTTTCTTCATGTCAGGAATGACTTCTTAAC
CGTATCCGTGTCTGGTCTTCCCCTTGTTATGGCGGTTTACCGTGTTGCAT
GTATGGTGCTGCTGTCGTTCCGCGCTGGGTTTCTGATTGTGCCGCATGCT
GCACAGGACTATGCAGTCTCAATTTGCCACCAAGTCGCCTGCGGGTGCGC
GCTGATTGGATCCCGATTGTGACTGCTCGCCCTCCTGCCCCGTGCACGCC
GTCCTTGTCGCTGCCGAATAAACGATGTTTCGCAGCTCAGCGAACACGTG
CGCAAAGACGGCCTTCGCTTCGTCCCTCGAACGCGCCACCGCCACCGGGC
AGGACGACATATACGGGGCTGGTGACAACGACGGCCGACCAGAGGCCAGC
GAGAGCCCAGCATTTACGCAGGCGGCTGCCCAATCTTGCTTCGAAGTTAT
TGAAGCTCCTCCAAATGTGGGGCGTACGGTATCCGTCAAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4960:5029..7919-

>mRNA_L-elsbetiae_contig4960.12934.1 ID=mRNA_L-elsbetiae_contig4960.12934.1|Name=mRNA_L-elsbetiae_contig4960.12934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig4960:5029..7919- (Laminarionema elsbetiae ELsaHSoW15)
TTCACGGTTCGCGAGTCCTGGTGCTGGTTCAGATTATACTTCACTCGTAC
TGGGGGTATGAGAGGGGGTACATGCGTATCTCTGAAGGAGAAAGCAATAA
GGCATGCGTTGGGGGGAAAGGCGCAAGATGTCCCGGCGGAAAAAATTTGT
TCACGGTTCGCGAGTCCTGGTGCTGGTTCAGATTATACTTCACTCGTACT
GGGGGTATGAGAGGGGGTACATGCGTATCTCTGAAGGAGAAAGCAATAAG
GCATGCGTTGGGGGGAAAGGCGCAAGATGTCCCGGCGGAAAAAATTTGCT
CAGCGAACACGTGCGCAAAGACGGCCTTCGCTTCGTCCCTCGAACGCGCC
ACCGCCACCGGGCAGGACGACATATACGGGGCTGGTGACAACGACGGCCG
ACCAGAGGCCAGCGAGAGCCCAGCATTTACGCAGGCGGCTGCCCAATCTT
GCTTCGAAGTTATTGAAGCTCCTCCAAATGTGGGGCGTACGGTATCCGTC
AAGCTCAGCGAACACGTGCGCAAAGACGGCCTTCGCTTCGTCCCTCGAAC
GCGCCACCGCCACCGGGCAGGACGACATATACGGGGCTGGTGACAACGAC
GGCCGACCAGAGGCCAGCGAGAGCCCAGCATTTACGCAGGCGGCTGCCCA
ATCTTGCTTCGAAGTTATTGAAGCTCCTCCAAATGTGGGGCGTACGGTAT
CCGTCAAG
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