mRNA_L-elsbetiae_contig4955.12924.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4955.12924.1
Unique NamemRNA_L-elsbetiae_contig4955.12924.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig4955.12924.1 vs. uniprot
Match: D7G144_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G144_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 2.920e-110
Identity = 354/663 (53.39%), Postives = 400/663 (60.33%), Query Frame = 1 
Query:  202 MPSNLFVVVFPRRVQAHTVFVDRKEKPRSKWSVGGLALAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAXXXXXXNAARNELKNQKTVRVQLSRPTEDMVPEPGAAKI-RRGSQ----AHRAE----------------SNG--ASWHPASSASTSANSSLVHLADSGIGGSLGGXXXDGGARASEWAGEVLKEHKKRRSFIHIPSRSVDLGSGG-GSMADIFGDQTSSERSSRASTSV-MLTTSGSGSGRDGARGGVRDGSGKHRRSTSASSVSPXXXXXXXXXXXXXXXXXXXXNTASLRVAAGGYPEDVAEMVVGGGAGSARDGSARDGGIAVGNEEREGLRKDDQPGKKAAASQQAWEEGEDKQKEELRRKEKDRGDGQXXXXXXXEVSTPSSPLHGLN--------FSGSAEIGARDRDGEQGEXXXXXXXXXXTEDVEDAAAVWEAPRTPKAVRSGP---PAAMSTPGSKRRLVTEVIGGNGDDVDVSRPQDMDEGEKVDIEKLVRGILVEMRGDQLLIGEPTYHTSASGKLMTCIFPCDVEDAHLVLTRLESVGVGSEIGSVNVLPMEIGRSDITRRRRENDDPDEDKARRARHSRATGGRFGDSNSCPGGCGDGSXXXGGEKDEEAAR 2082
            MPSNLFVVVFPRRVQAHTVFVDRKEKP+SKWSVGGL                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     A       +ARNELKNQKTVRVQLSRPTED++PEPG AK  RRGS     AH                   SN   ASWH    A  S+NS ++  +++G+  S GG    G   ++   G++LK  +K  SF HIPSRS DLG+GG GS+ADIF D   +ERSSRAST+  ++ ++G  SG  G   G  +G               XXXXXX                  + V     P+D    V            A     A G+E            KKA   Q+         +   R ++ D G     XXXXX  S  SSP  GL+         +G AE G    +GE+ +  XXXXXXXX          W+  +   + R G    P AMSTPGSKRRLVTEVIG +GDDVDVSRPQDMDEGEKVDIE LVR IL+EMRGDQLLIGEPTYH SASGKLMTCIFPCDVEDAHLVLTRLESVGVGSE GSVNVLPMEIGRSDITRRRRENDD DEDKARRARH+RATGGRFGD +   G   DGS   GGEK+E+AAR
Sbjct:    1 MPSNLFVVVFPRRVQAHTVFVDRKEKPKSKWSVGGLRSPPGLLGRDPKNGKGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRASASAV------SARNELKNQKTVRVQLSRPTEDVIPEPGTAKKQRRGSHMQALAHXXXXXXXXXXXXXXXXXXPSNDVTASWH----APQSSNSLVLPRSEAGLASSRGG----GSLGSAGALGDLLK--RKEHSFYHIPSRSADLGNGGVGSLADIFND---TERSSRASTTTGVVVSTGGYSGLFGVGSGGANGXXXXXXXXXXXXXXXXXXXXXSSQCFLELVGADSAGNGGVFVERCRGPDDQPHRV-----------PANRAARADGDE------------KKAVEGQEG--------RRRSRAEDTDGGVDYSRXXXXXSSSPTSSPARGLDGISSRRSSMAGLAEGGDLGEEGERKDAEXXXXXXXXX-----XVQGWDPEQMDDSERGGKATTPTAMSTPGSKRRLVTEVIG-DGDDVDVSRPQDMDEGEKVDIELLVRDILIEMRGDQLLIGEPTYHISASGKLMTCIFPCDVEDAHLVLTRLESVGVGSETGSVNVLPMEIGRSDITRRRRENDDLDEDKARRARHNRATGGRFGDLSGGRGSV-DGS---GGEKEEDAAR 603
[Close]
BLAST of mRNA_L-elsbetiae_contig4955.12924.1 vs. uniprot
Match: A0A6H5KJ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ96_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 2.470e-94
Identity = 322/650 (49.54%), Postives = 360/650 (55.38%), Query Frame = 1 
Query:  202 MPSNLFVVVFPRRVQAHTVFVDRKEKPRSKWSVGGLALAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAXXXXXXNAARNELKNQKTVRVQLSRPTEDMVPEPGAAKI-RRGSQ----AHRAESNG----------------------ASWH-PASSASTSANSSLVHLADSGIGGSLGGXXXDGGARASEWAGEVLKEHKKRRSFIHIPSRSVDLGSGG-GSMADIFGDQTSSERSSRASTSVMLTTSGSGSGRDGARGGVRDGSGKHRRSTSASSVSPXXXXXXXXXXXXXXXXXXXXNTASLRVAAGGYPEDVA-EMVVGGGAGSARDGSARDGGIAVGNEEREGLRKDDQPGKKAAASQQAWEEGEDK-----QKEELRRKEKDRGDG----------QXXXXXXXEVSTPSSPLHGLNFSGSAEIGARDRDGEQGEXXXXXXXXXXTEDVEDAAAVWEAPRTPKAVRSGP---PAAMSTPGSKRRLVTEVIGGNGDDVDVSRPQDMDEGEKVDIEKLVRGILVEMRGDQLLIGEPTYHTSASGKLMTCIFPCDVEDAHLVLTRLESVGVGSEIGSVNVLPMEIGRSDITRRRRENDDPDEDKARRARHSRATGGRFGD 2007
            MPSNLFVVVFPRRVQAHTVFVDRKEKP+SKWSVGGL                 XXXXXXXXXXXXXX                            A       +ARNELKNQKTVRVQLSRPTED+VP+PG AK  RRGS     AH                            ASWH P +S+S   + S   LA S  GGSLG             AG +    +K  SF HIPSRS DLG+GG GS+AD+F D   +E SSRAS                                       XXXXXXXXXXXXXXXXXXXX          G  E  A E +VG         SA  GG+ V   +R G   DDQP +K  A++ A  +G+++     Q+   R + +D   G           XXXXXXX               G AE G    +GE+ +               D    W++ +T  + R G    P AMSTPGSKRRLVTEVIG +GDDVDVSRPQDMDEGEKVDIE+LVR IL+EMRGDQLLIGEPTYH SASGKLMTCIFPCDVEDAHLVLTRLESVGVGSE GSVNVLPMEIGRSDITRRRR+ND  DEDKARR RH+RATGGRFGD
Sbjct:    1 MPSNLFVVVFPRRVQAHTVFVDRKEKPKSKWSVGGLRSPPGLLGRDSKNGKGDXXXXXXXXXXXXXXASCGSVNSGGATGGSSSRDESLARASASAV------SARNELKNQKTVRVQLSRPTEDVVPKPGTAKKQRRGSHVQALAHXXXXXXXXXXXXXXXXXXXXXXXXSEVTASWHAPQTSSSLVLSRSEAGLASSRGGGSLGS------------AGALEDLRRKEHSFYHIPSRSADLGNGGVGSLADMFND---AETSSRASXXXXXXXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDEAAADEELVGAD-------SAGYGGVFV---QRCGG-PDDQP-RKVPANRAARTDGDEEKAVEGQEGRRRSRAEDNSGGVDYSRXXXXXXXXXXXXXXXXXXXXXXXXXXMVGLAEGGDLGGEGERKDSEEGGGGG-------DGVNGWDSEQTDDSERGGKATTPTAMSTPGSKRRLVTEVIG-DGDDVDVSRPQDMDEGEKVDIEQLVRDILIEMRGDQLLIGEPTYHVSASGKLMTCIFPCDVEDAHLVLTRLESVGVGSETGSVNVLPMEIGRSDITRRRRDNDGLDEDKARRGRHNRATGGRFGD 601
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4955.12924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G144_ECTSI2.920e-11053.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ96_9PHAE2.470e-9449.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4955contigL-elsbetiae_contig4955:6562..13180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.6
Seed ortholog evalue5.2e-101
Seed eggNOG ortholog2880.D7G144
Hectar predicted targeting categoryother localisation
GOsGO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0022008,GO:0030154,GO:0032501,GO:0032502,GO:0048731,GO:0048856,GO:0048869
EggNOG free text desc.Domain of unknown function (DUF389)
EggNOG OGs2QWS6@2759,COG1808@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2084
Cds size2082
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816494.9699013-CDS-L-elsbetiae_contig4955:6561..65931622816494.9699013-CDS-L-elsbetiae_contig4955:6561..6593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 6562..6593 +
1691683600.7709913-CDS-L-elsbetiae_contig4955:6561..65931691683600.7709913-CDS-L-elsbetiae_contig4955:6561..6593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 6562..6593 +
1622816494.9820516-CDS-L-elsbetiae_contig4955:7463..76851622816494.9820516-CDS-L-elsbetiae_contig4955:7463..7685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 7464..7685 +
1691683600.7870195-CDS-L-elsbetiae_contig4955:7463..76851691683600.7870195-CDS-L-elsbetiae_contig4955:7463..7685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 7464..7685 +
1622816494.9972672-CDS-L-elsbetiae_contig4955:7942..80411622816494.9972672-CDS-L-elsbetiae_contig4955:7942..8041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 7943..8041 +
1691683600.8031056-CDS-L-elsbetiae_contig4955:7942..80411691683600.8031056-CDS-L-elsbetiae_contig4955:7942..8041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 7943..8041 +
1622816495.0104647-CDS-L-elsbetiae_contig4955:9909..99811622816495.0104647-CDS-L-elsbetiae_contig4955:9909..9981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 9910..9981 +
1691683600.811579-CDS-L-elsbetiae_contig4955:9909..99811691683600.811579-CDS-L-elsbetiae_contig4955:9909..9981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 9910..9981 +
1622816495.024277-CDS-L-elsbetiae_contig4955:10630..118881622816495.024277-CDS-L-elsbetiae_contig4955:10630..11888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 10631..11888 +
1691683600.820464-CDS-L-elsbetiae_contig4955:10630..118881691683600.820464-CDS-L-elsbetiae_contig4955:10630..11888Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 10631..11888 +
1622816495.0366964-CDS-L-elsbetiae_contig4955:12541..126991622816495.0366964-CDS-L-elsbetiae_contig4955:12541..12699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 12542..12699 +
1691683600.8311-CDS-L-elsbetiae_contig4955:12541..126991691683600.8311-CDS-L-elsbetiae_contig4955:12541..12699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 12542..12699 +
1622816495.048105-CDS-L-elsbetiae_contig4955:12938..131791622816495.048105-CDS-L-elsbetiae_contig4955:12938..13179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 12939..13179 +
1691683600.8416948-CDS-L-elsbetiae_contig4955:12938..131791691683600.8416948-CDS-L-elsbetiae_contig4955:12938..13179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4955 12939..13179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4955.12924.1prot_L-elsbetiae_contig4955.12924.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4955 6562..13179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4955.12924.1

>prot_L-elsbetiae_contig4955.12924.1 ID=prot_L-elsbetiae_contig4955.12924.1|Name=mRNA_L-elsbetiae_contig4955.12924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=694bp
PANTHGVRDGRSAFSRRTVASARPLKFLKKHPASPGPGQANLPGRCAAAA
AGALQSRTPPPPPPPRAMPSNLFVVVFPRRVQAHTVFVDRKEKPRSKWSV
GGLALAGGLRSPPGLLGRDGKAGKGDDRGNGLDQGTGRDNASCGSPASRS
SSREGSLSRGGGAGAAAAANAARNELKNQKTVRVQLSRPTEDMVPEPGAA
KIRRGSQAHRAESNGASWHPASSASTSANSSLVHLADSGIGGSLGGIGGD
GGARASEWAGEVLKEHKKRRSFIHIPSRSVDLGSGGGSMADIFGDQTSSE
RSSRASTSVMLTTSGSGSGRDGARGGVRDGSGKHRRSTSASSVSPLALSR
GSGSGSGGGGSGGGGNTASLRVAAGGYPEDVAEMVVGGGAGSARDGSARD
GGIAVGNEEREGLRKDDQPGKKAAASQQAWEEGEDKQKEELRRKEKDRGD
GQEGGEGGEEVSTPSSPLHGLNFSGSAEIGARDRDGEQGERKDSEEGGEE
TEDVEDAAAVWEAPRTPKAVRSGPPAAMSTPGSKRRLVTEVIGGNGDDVD
VSRPQDMDEGEKVDIEKLVRGILVEMRGDQLLIGEPTYHTSASGKLMTCI
FPCDVEDAHLVLTRLESVGVGSEIGSVNVLPMEIGRSDITRRRRENDDPD
EDKARRARHSRATGGRFGDSNSCPGGCGDGSGSGGGEKDEEAAR
back to top

mRNA from alignment at L-elsbetiae_contig4955:6562..13180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4955.12924.1 ID=mRNA_L-elsbetiae_contig4955.12924.1|Name=mRNA_L-elsbetiae_contig4955.12924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6619bp|location=Sequence derived from alignment at L-elsbetiae_contig4955:6562..13180+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGCGAATACGCACGGGGTTCGAGACGGCAGGTGAGAGAGACGGTGGTA
TTTCCATCCGCCGCGAATGAATTCCTCGGCACCACATCGCCGCTGGACAC
TTTGTTCTTACGAGTCGAGAGCCCAAGAGCTACCCGCAGTCGATGTATCG
CTGTTCCCGATTTTTTTTTGGCCGACCACTCGCCTCTTTCTCTCGTTGTG
TCGTTCGTCACCGTCTCTCTGCTCTGCGTCTCTCTTCCATTGTCTCCCAT
ACGCCCTCATCCGAAGAAAGCGAAGGGGTGGTTTGCTTCTAGCCGTTTGT
TGTTCTTCATCCGTGCCCGGCAAGTTGTGTGTGAATCCGATAAAAGTGGT
AGCTTCGAGAGAAGAGCTGCCCTGTGTTCCCACAAACAAAATCGACCGCC
TTTCTTGCTTGCACCCACAGCAATTTGCAAAAATCTCCGGTTGGTTTCAT
TCGATTGTGGAACCATCGGCGTTCGTCAGCGCCGCTGTGGCGTCAAAACG
TACCCCACGAAACCGGTGTAGGACATGGCGCGCGCGCCTTCGATATTTCC
ATTCCCCCCTGGTCTGCGCCCCCGCTGATCATTGCCAGCAGCGCCTGTAT
TGTTTACCGTTGGGTCAACAAAAAATTGTCTTCAAAGAAACATGTCCCGA
TCGATCCCTCTTGGATTTTTGGCGGTAAGCGCAAAAATGCAGACCGCGCG
CCACTACAATGCATAGAACACACGCAGTCCCTCCCTCGGCCTTTTGCACA
CTGCAAGACACGTTTCCGTCTCCCTCCCGCTCTGCCACTGTCGCAACACC
TAACAGCCTGCTGTGACGACTGCGCTTCCCCTCCTGCCCGCCCCTCTGCG
GTGCGGCGCCCGTTTCGCGCGATCTCTGGTTCTTTAAAAAATAAATAAAT
AGATCTGCTTTTTCTCGGCGAACAGTTGCATCCGCGCGCCCCTTAAAGTT
CTTAAAAAAACACCCGGCCAGCCCGGGGCCGGGGCAGGCAAATCTTCCCG
GCCGGTGTGCCGCTGCTGCTGCTGGTGCACTCCAAAGCCGCACCCCCCCC
CCCCCCCCACCACCCCGAGCGATGCCGTCCAACCTGTTCGTGGTGGTCTT
CCCTCGACGAGTGCAGGCACACACGTGAGTCTTTTTTTTTAGCGAACGGG
ATCAGGGAAGGCGCGCCTTTTGATTCTGATTTGTTAAGTTTTTTTTATGT
TATTTGCGCAGGACTTCGACGAAACGGTGGGTTGATGTATAGTACCACCC
ATGGATAACGATGCTGCCCGCAGGGGATCGAATTCTTCGCTAGCTTGAAG
TTGCTCCATCTTCCGCCGCTGCGGCTCTTTGTCCTTGACGTTTTGGATTC
GATTCCTTTTCTCGAAAAAAACTCCTCGCAGGGTGTTCGTCGACAGAAAA
GAGAAGCCCAGGAGCAAGTGGAGCGTCGGAGGCTTGGCTCTGGCTGGCGG
CTTGAGGAGCCCGCCGGGGTTGCTGGGAAGGTGGGTGGGCGCTCTTTTGT
GGGAGACGGAGCCTGTCGCAATATGATATGGCTGCAAACCTGTGCATTTT
TACACGCGAACACACGCACACACCAGGAGCTTTGTCGCATGTTGGCTTCA
TAATTTGGCCTCTTCCTTGGGAAGGTATAGGGATGTAATTGTTGATAAAA
AATTGTGCTGATATTTTATATTTAATCCAACAGGAGTAGGGTACAAAAGC
AGTTGGGAGTGACCGGTCCCGTCTACAAGTATTTTGGTGGAGTCAGACAG
AGATGGCACGGGGATATCCGTCCGAAAAACAACACCCTTCTTATCTTGCG
CCTGTAAGCAGTATTTTCTGCTCGAATCTTGAGAGTGTAAACGCTGAATG
TTGTTTTATCTCCTGCCCGTACATCCAGGGTACATCCAGATATGAGCCAA
CAGCTGCTGTTCTCTGTGCCCGGAGAAGTTTCCCAAGAGAAAACTACAAA
TAGAGCGTGCTGTTGGTATTGAAGAGACCCTCGCTGCCTGGACCAGCCAG
ACGATATCTTCTCTCAAAAGAAAAGCGGAAAATAATTCCATGTCCATATA
TTTCACTTCTTATTAGAGCCGTTTAAATATCAAGTTGGTTTGTTGTGACA
TTAGGACCGTTTCACCCAGAGTATAGGGCTATAGATATGCAGGCATAAGC
CGACAGAGTGCAATTGGTAAATATACTCCAACAGAAAAAAAGCGGCCTCG
GAGGTTTTGCTGCCGCTGCTGCATGGATTTGCCCGTTGGGCGGAAACAAG
CTGTATTTTAGAGCTGGAGTGAGAGGACAGTCGCACACCGAACACCTCGG
GTGTTCCTCATTGCGCCAAGTCGCACACCGCACACCCACCGCACACCTCG
GGTGTTTCTGATTGCGTGCCTCTTATTTTGTGTTCTGTGGTCTCCATGGG
TCTATGGGCGGCCGGCGCGGAAGCGTTGGCGTTGCTTTTGTCTGGGTTTT
TTCCCAGTCCGCGTGTTCCAGCTGCGGCAAAGCTGTGTTTGGAATATGAA
CACGAACGGTACTACACAAGATACGTTCGCCGACCGAGTCAACAATACAT
TTTGCTACCGCCTGCCACTTGCCCACTTGGCTCTCGTGGGCAGGTCGTGG
GCAGCTCTTGAACCCCTTTGACTCCCCAGAGTACAGCAGGTTTTCTTTTG
TCCTAAAACATTTTTACGAGCCATGCCCTTCCCCCCGTCCAAACAGCGTA
TTATTTTGGTGGGCGGGATCAATATTTAGGATTAGGAGATCCAAGATGGA
ATGTGCACGCTGCGTTGAACACCAAATAGCAGCGCACCTCGCTGGCTGAT
GAACCGGGTTGTGATGCTGGTGTTGTCCACGACTTTTTTTCAACAGGAGC
CCAAAAAATAGATTGTTTGTACTGTAAGCCACCGCTTCTGTGGCATTGCC
GCTCGCTGACGCTTCATTCCGCAAATTACCAAGCGTGAAAGTTTTCGAGC
CGAAAAGTGGTTGCAACGCTGTGCAAAGAGTACATGCATACACACAAAGC
ACACCCTGTAAACCTTGCGCATCTCTAGGGCGGAGGCGCCGGGATTATCG
GGAACTCGTGCTCACCTTTTACCGAAATAGGCGAGAGCTTGGGCTCTGAA
TCGATCTTCGTTGATGCTCGCCGTTCGCACCCGCGCGTTCACCGAGCCTT
CTTGCTTGGGTGATCATTTGCTGCGAAGTACACATATACTCCACTGTTTT
ACATACCATACTGCATGCGTGTTTGTTATTTTTGTCTCATAGGTGACGCT
GTGCCTACATGCCTTCTAAATACTCCGGTTTGTAACCTAGCTGCTGCGAC
CATATGCTTCCCCCCCCTCTTTTTTACTTTTGCGAACGATGTTATCAGAG
ACGGCAAGGCCGGCAAAGGGGACGACAGGGGCAATGGCCTGGATCAAGGA
ACTGGCCGCGACAACGCGAGGTACATGCTTTGGTTTTGCCCCGTTGTACA
TACGTATGCACTACCCGCCTCTCCCTCTCATTGGCCCTCCAGGACACTCT
CTCTCAGTGTCATTTTGTCTCTGTGGTTCTTGATGGCTGCTGGTACTGCA
GTTGATGGCCAAATGCCTTGTGTGTAGCGTACATAGCACTTGTTCTGTGT
TTTTCGTTATTTGCTCCGCTCGCTACCTTTGTGTGTGATGAGGCTTGGGG
CTATGCTATCCGCGCCCTTCTTTTTGTGTTGCGGTTTTGTGTGCGGAAAT
GTGTATGTACTCGCGCGCACGAGATAGCCGAACCGATCCGATCCGACTTC
CCTGTCTCGGACACAGGCGCAATGAAACCGCACCCGGCACAACCACCCCG
GAAACCCAGGCGCCGTGCAGTGAAAGCCATGGTTTGCCAAGCATTAACGT
CCCAAACCTGCCCCCCCCCCCCCTTCCTCTCCCCCCCCCCCCCCCCTCCC
TTTCTCCATCTGTGTCATTTCGTTGTGGTGTGTTGTCAACAAACGCACTC
GGAACACACGCGGCTGCCTACCGACAACATACACACACACACACAACCCA
CGGCTTCAACACAAACACTACTCAAAACCACCCAACCGCGGTTAAAAAAT
CCTTTGTAACAAAAAACAGCTGCGGAAGCCCAGCGTCCAGGAGTAGCAGC
AGGGAAGGCAGCCTCTCGCGGGGGGGCGGGGCGGGCGCCGCCGCCGCCGC
AAACGCCGCCCGGAACGAGCTCAAGAACCAGAAGACCGTTCGCGTGCAGC
TGTCCCGCCCCACGGAGGACATGGTGCCAGAGCCGGGGGCGGCGAAGATC
CGCCGAGGCAGCCAGGCCCACCGCGCCGAGAGCAACGGCGCGAGCTGGCA
CCCGGCGTCCTCGGCGTCTACCTCCGCCAACAGCTCTCTGGTGCACCTCG
CGGACTCGGGGATAGGCGGGAGCCTGGGCGGGATCGGCGGCGACGGCGGC
GCCCGCGCGAGCGAGTGGGCCGGAGAGGTCCTGAAGGAGCACAAGAAGCG
GCGGTCCTTCATCCACATCCCGTCCCGCTCGGTGGACCTGGGAAGCGGCG
GCGGCAGCATGGCGGACATCTTCGGGGACCAGACCTCGTCGGAGCGGTCC
TCGCGCGCATCGACGAGCGTGATGCTAACGACCAGCGGCAGCGGGAGCGG
CAGGGACGGGGCCCGCGGCGGCGTCAGGGACGGGAGCGGGAAGCACCGGA
GGAGCACGTCGGCGTCGTCGGTGTCGCCCCTGGCTTTGAGCCGCGGCAGC
GGCAGCGGCAGCGGCGGCGGCGGTAGCGGCGGCGGCGGCAACACCGCTTC
GCTGCGGGTGGCGGCTGGCGGTTATCCGGAAGATGTGGCGGAGATGGTTG
TCGGCGGGGGCGCCGGTAGCGCCCGCGACGGTAGCGCCCGCGACGGTGGG
ATCGCGGTCGGGAATGAAGAAAGGGAGGGGCTCCGCAAGGACGACCAGCC
GGGGAAGAAGGCGGCCGCGAGCCAACAAGCGTGGGAAGAGGGCGAGGACA
AACAAAAGGAAGAGTTACGTCGAAAAGAAAAAGACAGAGGTGATGGACAA
GAAGGAGGAGAGGGAGGGGAAGAAGTGTCAACACCTTCTTCCCCGCTTCA
CGGCTTAAATTTTAGCGGCAGCGCGGAGATTGGAGCACGGGACCGAGACG
GCGAGCAGGGGGAGCGGAAAGACTCCGAGGAAGGGGGGGAGGAGACGGAG
GACGTCGAGGATGCCGCCGCGGTTTGGGAGGCCCCGCGGACACCGAAAGC
TGTCCGATCGGGACCCCCTGCGGCCATGTCTACCCCCGGGAGCAAGCGGA
GATTAGTGACGGAGGTCATCGGGGGCAATGGTGACGACGTAGACGTCTCC
AGGCCTCAGGACATGGATGAAGGGGAGGTGAGGTTTGATTTTTGCGGAAC
ATGGGGTGTAGAAGTCTTGAAATCGGGAGACGGGTCGGGGTTTTAGGGGA
GGGTTAAGTTTATGCTTGCGGAGCCCGATTTCTATCTATTTCCTAGATAA
AACTGATTCTACCACGGAGGCGGTCCAAATCTTAATTTATTGAAATGTAG
TTCACATTTCCGATGTCCTTCTTCGCTTCTTCGGTTGAGTGAAATCCAGA
TTCTTCGGTTGAGTGAAATCCAGATATTTGTTCCGGTACGTTTCAACTGA
GGTTATTTGGCTATTTGCTGGTGCTTTTCGCCAAGGAAGACCAACGTGGT
ATGTAACGCTACCGCTGTGTGACGTACAGGCCATTGCCCCCCCCTGCCCC
CCCCCCTCATTGACTCCGATATGGGGTGCCCCGTACACTTGGCGACTTGC
CGAACCGTCCCCAACTGTTGGTGCTTATCTACCCACCCAGGCGCTCCCGC
ATGTAACTCTTGTTTTTCTCTTTGTTATAATTATAAAACCGCCGTCTCAA
AAACTCCCACTCTTCTCTCTCTTTGTCCTCTCCGTTGTCCTGCATGTGCC
ACACGGTGTCATGTGCTGCCGTCCCTCATTGCTTGCGCTTTTGTATGTAC
GTGTTTGCTTCGCCCCCCCCACCCGAGCAGAAAGTAGATATCGAGAAGCT
GGTGAGGGGTATTTTAGTGGAGATGCGAGGGGACCAGCTCCTCATCGGAG
AGCCGACGTACCACACCTCCGCGTCCGGGAAGCTGATGACGTGCATCTTC
CCCTGCGATGTGGAGGACGCCCATCTCGTGCTTACAAGGTGCGCTGCGTT
TGCTTTCAAGTTATGAGGACAAGACCGAGACTGCCGACGAGTAGTCCGGG
TGTTTGTTGATACGCCCCGCCCCCCCGAATTGGAAAACGTTCCCACGCCG
GGGTGGGGGCGGCTTAACCCACGTCCCCCCTCCCCCCGAAAAAACAATGA
TGATTGTTAAAATCAAAAACGATTTCAAAATAAATCGAATAAAATGAATT
GAATTACGACTGGGTTGGTTCCACCAGGCTGGAGAGCGTTGGCGTTGGAT
CCGAGATCGGGTCGGTAAACGTCCTCCCCATGGAGATCGGGCGCAGCGAC
ATCACCCGCCGCCGCCGCGAGAACGACGACCCTGACGAGGACAAGGCCCG
GCGGGCCCGCCACAGCCGGGCCACGGGGGGCCGGTTCGGCGACTCGAACA
GCTGCCCGGGGGGATGCGGGGACGGCAGCGGCAGCGGGGGAGGGGAGAAG
GACGAAGAGGCCGCGCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4955:6562..13180+

>mRNA_L-elsbetiae_contig4955.12924.1 ID=mRNA_L-elsbetiae_contig4955.12924.1|Name=mRNA_L-elsbetiae_contig4955.12924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4164bp|location=Sequence derived from alignment at L-elsbetiae_contig4955:6562..13180+ (Laminarionema elsbetiae ELsaHSoW15)
CCAGCGAATACGCACGGGGTTCGAGACGGCAGCCAGCGAATACGCACGGG
GTTCGAGACGGCAGATCTGCTTTTTCTCGGCGAACAGTTGCATCCGCGCG
CCCCTTAAAGTTCTTAAAAAAACACCCGGCCAGCCCGGGGCCGGGGCAGG
CAAATCTTCCCGGCCGGTGTGCCGCTGCTGCTGCTGGTGCACTCCAAAGC
CGCACCCCCCCCCCCCCCCCACCACCCCGAGCGATGCCGTCCAACCTGTT
CGTGGTGGTCTTCCCTCGACGAGTGCAGGCACACACATCTGCTTTTTCTC
GGCGAACAGTTGCATCCGCGCGCCCCTTAAAGTTCTTAAAAAAACACCCG
GCCAGCCCGGGGCCGGGGCAGGCAAATCTTCCCGGCCGGTGTGCCGCTGC
TGCTGCTGGTGCACTCCAAAGCCGCACCCCCCCCCCCCCCCCACCACCCC
GAGCGATGCCGTCCAACCTGTTCGTGGTGGTCTTCCCTCGACGAGTGCAG
GCACACACGGTGTTCGTCGACAGAAAAGAGAAGCCCAGGAGCAAGTGGAG
CGTCGGAGGCTTGGCTCTGGCTGGCGGCTTGAGGAGCCCGCCGGGGTTGC
TGGGAAGGGTGTTCGTCGACAGAAAAGAGAAGCCCAGGAGCAAGTGGAGC
GTCGGAGGCTTGGCTCTGGCTGGCGGCTTGAGGAGCCCGCCGGGGTTGCT
GGGAAGAGACGGCAAGGCCGGCAAAGGGGACGACAGGGGCAATGGCCTGG
ATCAAGGAACTGGCCGCGACAACGCGAGAGACGGCAAGGCCGGCAAAGGG
GACGACAGGGGCAATGGCCTGGATCAAGGAACTGGCCGCGACAACGCGAG
CTGCGGAAGCCCAGCGTCCAGGAGTAGCAGCAGGGAAGGCAGCCTCTCGC
GGGGGGGCGGGGCGGGCGCCGCCGCCGCCGCAAACGCCGCCCGGAACGAG
CTCAAGAACCAGAAGACCGTTCGCGTGCAGCTGTCCCGCCCCACGGAGGA
CATGGTGCCAGAGCCGGGGGCGGCGAAGATCCGCCGAGGCAGCCAGGCCC
ACCGCGCCGAGAGCAACGGCGCGAGCTGGCACCCGGCGTCCTCGGCGTCT
ACCTCCGCCAACAGCTCTCTGGTGCACCTCGCGGACTCGGGGATAGGCGG
GAGCCTGGGCGGGATCGGCGGCGACGGCGGCGCCCGCGCGAGCGAGTGGG
CCGGAGAGGTCCTGAAGGAGCACAAGAAGCGGCGGTCCTTCATCCACATC
CCGTCCCGCTCGGTGGACCTGGGAAGCGGCGGCGGCAGCATGGCGGACAT
CTTCGGGGACCAGACCTCGTCGGAGCGGTCCTCGCGCGCATCGACGAGCG
TGATGCTAACGACCAGCGGCAGCGGGAGCGGCAGGGACGGGGCCCGCGGC
GGCGTCAGGGACGGGAGCGGGAAGCACCGGAGGAGCACGTCGGCGTCGTC
GGTGTCGCCCCTGGCTTTGAGCCGCGGCAGCGGCAGCGGCAGCGGCGGCG
GCGGTAGCGGCGGCGGCGGCAACACCGCTTCGCTGCGGGTGGCGGCTGGC
GGTTATCCGGAAGATGTGGCGGAGATGGTTGTCGGCGGGGGCGCCGGTAG
CGCCCGCGACGGTAGCGCCCGCGACGGTGGGATCGCGGTCGGGAATGAAG
AAAGGGAGGGGCTCCGCAAGGACGACCAGCCGGGGAAGAAGGCGGCCGCG
AGCCAACAAGCGTGGGAAGAGGGCGAGGACAAACAAAAGGAAGAGTTACG
TCGAAAAGAAAAAGACAGAGGTGATGGACAAGAAGGAGGAGAGGGAGGGG
AAGAAGTGTCAACACCTTCTTCCCCGCTTCACGGCTTAAATTTTAGCGGC
AGCGCGGAGATTGGAGCACGGGACCGAGACGGCGAGCAGGGGGAGCGGAA
AGACTCCGAGGAAGGGGGGGAGGAGACGGAGGACGTCGAGGATGCCGCCG
CGGTTTGGGAGGCCCCGCGGACACCGAAAGCTGTCCGATCGGGACCCCCT
GCGGCCATGTCTACCCCCGGGAGCAAGCGGAGATTAGTGACGGAGGTCAT
CGGGGGCAATGGTGACGACGTAGACGTCTCCAGGCCTCAGGACATGGATG
AAGGGGAGCTGCGGAAGCCCAGCGTCCAGGAGTAGCAGCAGGGAAGGCAG
CCTCTCGCGGGGGGGCGGGGCGGGCGCCGCCGCCGCCGCAAACGCCGCCC
GGAACGAGCTCAAGAACCAGAAGACCGTTCGCGTGCAGCTGTCCCGCCCC
ACGGAGGACATGGTGCCAGAGCCGGGGGCGGCGAAGATCCGCCGAGGCAG
CCAGGCCCACCGCGCCGAGAGCAACGGCGCGAGCTGGCACCCGGCGTCCT
CGGCGTCTACCTCCGCCAACAGCTCTCTGGTGCACCTCGCGGACTCGGGG
ATAGGCGGGAGCCTGGGCGGGATCGGCGGCGACGGCGGCGCCCGCGCGAG
CGAGTGGGCCGGAGAGGTCCTGAAGGAGCACAAGAAGCGGCGGTCCTTCA
TCCACATCCCGTCCCGCTCGGTGGACCTGGGAAGCGGCGGCGGCAGCATG
GCGGACATCTTCGGGGACCAGACCTCGTCGGAGCGGTCCTCGCGCGCATC
GACGAGCGTGATGCTAACGACCAGCGGCAGCGGGAGCGGCAGGGACGGGG
CCCGCGGCGGCGTCAGGGACGGGAGCGGGAAGCACCGGAGGAGCACGTCG
GCGTCGTCGGTGTCGCCCCTGGCTTTGAGCCGCGGCAGCGGCAGCGGCAG
CGGCGGCGGCGGTAGCGGCGGCGGCGGCAACACCGCTTCGCTGCGGGTGG
CGGCTGGCGGTTATCCGGAAGATGTGGCGGAGATGGTTGTCGGCGGGGGC
GCCGGTAGCGCCCGCGACGGTAGCGCCCGCGACGGTGGGATCGCGGTCGG
GAATGAAGAAAGGGAGGGGCTCCGCAAGGACGACCAGCCGGGGAAGAAGG
CGGCCGCGAGCCAACAAGCGTGGGAAGAGGGCGAGGACAAACAAAAGGAA
GAGTTACGTCGAAAAGAAAAAGACAGAGGTGATGGACAAGAAGGAGGAGA
GGGAGGGGAAGAAGTGTCAACACCTTCTTCCCCGCTTCACGGCTTAAATT
TTAGCGGCAGCGCGGAGATTGGAGCACGGGACCGAGACGGCGAGCAGGGG
GAGCGGAAAGACTCCGAGGAAGGGGGGGAGGAGACGGAGGACGTCGAGGA
TGCCGCCGCGGTTTGGGAGGCCCCGCGGACACCGAAAGCTGTCCGATCGG
GACCCCCTGCGGCCATGTCTACCCCCGGGAGCAAGCGGAGATTAGTGACG
GAGGTCATCGGGGGCAATGGTGACGACGTAGACGTCTCCAGGCCTCAGGA
CATGGATGAAGGGGAGAAAGTAGATATCGAGAAGCTGGTGAGGGGTATTT
TAGTGGAGATGCGAGGGGACCAGCTCCTCATCGGAGAGCCGACGTACCAC
ACCTCCGCGTCCGGGAAGCTGATGACGTGCATCTTCCCCTGCGATGTGGA
GGACGCCCATCTCGTGCTTACAAGAAAGTAGATATCGAGAAGCTGGTGAG
GGGTATTTTAGTGGAGATGCGAGGGGACCAGCTCCTCATCGGAGAGCCGA
CGTACCACACCTCCGCGTCCGGGAAGCTGATGACGTGCATCTTCCCCTGC
GATGTGGAGGACGCCCATCTCGTGCTTACAAGGCTGGAGAGCGTTGGCGT
TGGATCCGAGATCGGGTCGGTAAACGTCCTCCCCATGGAGATCGGGCGCA
GCGACATCACCCGCCGCCGCCGCGAGAACGACGACCCTGACGAGGACAAG
GCCCGGCGGGCCCGCCACAGCCGGGCCACGGGGGGCCGGTTCGGCGACTC
GAACAGCTGCCCGGGGGGATGCGGGGACGGCAGCGGCAGCGGGGGAGGGG
AGAAGGACGAAGAGGCCGCGCGGGCTGGAGAGCGTTGGCGTTGGATCCGA
GATCGGGTCGGTAAACGTCCTCCCCATGGAGATCGGGCGCAGCGACATCA
CCCGCCGCCGCCGCGAGAACGACGACCCTGACGAGGACAAGGCCCGGCGG
GCCCGCCACAGCCGGGCCACGGGGGGCCGGTTCGGCGACTCGAACAGCTG
CCCGGGGGGATGCGGGGACGGCAGCGGCAGCGGGGGAGGGGAGAAGGACG
AAGAGGCCGCGCGG
back to top