mRNA_L-elsbetiae_contig4953.12923.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4953.12923.1
Unique NamemRNA_L-elsbetiae_contig4953.12923.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 352 bits (904), Expect = 7.330e-122
Identity = 173/178 (97.19%), Postives = 175/178 (98.31%), Query Frame = 1 
Query:    1 SLALTGHRHLVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            SLALTGHR LVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVAK KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLH++SKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHE CINTAVSVRKQFRMF
Sbjct:   14 SLALTGHRFLVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKSKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHEPCINTAVSVRKQFRMF 191
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 271 bits (694), Expect = 2.750e-90
Identity = 129/165 (78.18%), Postives = 148/165 (89.70%), Query Frame = 1 
Query:   40 DYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            +Y+EAEQ EKAYQKQDA+F+ AKRV+GKK  KG  MRF KN+GLGFKTPK A  GTYVDKKCPFTG+VSIRGRILKGLV+SAGKM NT VIRRDYLHY++KYRRFEKRHKN+ VH +PC+ NVKEGDI+T+GQCRPLSKT+RFN LEHE CINT++SV+KQFRMF
Sbjct:    2 EYKEAEQTEKAYQKQDAVFIAAKRVIGKKTKKG--MRFYKNIGLGFKTPKLAISGTYVDKKCPFTGNVSIRGRILKGLVLSAGKMKNTCVIRRDYLHYVTKYRRFEKRHKNLMVHLSPCFPNVKEGDILTVGQCRPLSKTIRFNALEHEPCINTSISVKKQFRMF 164
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 261 bits (666), Expect = 5.180e-86
Identity = 127/165 (76.97%), Postives = 145/165 (87.88%), Query Frame = 1 
Query:   40 DYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            +Y+EA+QHEKAYQKQDA+F+  KRV+GKK  KG  MRF KN+GLGFKTPK A EGTYVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLHYISKYRRFEKRHKNM VH +PC+  +KEGD+VTIGQCRPLSKTVRFNVLEH   +N A++V+KQFRMF
Sbjct:    4 EYKEADQHEKAYQKQDAVFIAKKRVIGKKSRKG--MRFYKNIGLGFKTPKLAIEGTYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYISKYRRFEKRHKNMAVHASPCFDTIKEGDVVTIGQCRPLSKTVRFNVLEHLPSVNQALNVKKQFRMF 165
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 247 bits (631), Expect = 2.210e-80
Identity = 120/169 (71.01%), Postives = 146/169 (86.39%), Query Frame = 1 
Query:   28 LVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            + P +YREAEQ EKAYQKQDA+FVG KR L + V K KGMR+VKN+GLGFKTP+ A EG YVD+KCPFTG+VSIRG+ILKG+VIS  KMT T+V+RRDYLH++ KY+R+EKRHKNMTVHC+P + NVK GD+VT+GQCRPLSKT+RFNVL HE  +N +VSV+KQFR+F
Sbjct:   21 MAPKNYREAEQTEKAYQKQDAVFVGTKRSLVR-VGK-KGMRYVKNIGLGFKTPQRAIEGNYVDRKCPFTGNVSIRGKILKGIVIS-NKMTRTVVVRRDYLHFVRKYKRYEKRHKNMTVHCSPAFTNVKPGDVVTVGQCRPLSKTIRFNVLVHEPAVNQSVSVKKQFRVF 186
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: F0XZW5_AURAN (Ribosomal_S17_N domain-containing protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0XZW5_AURAN)

HSP 1 Score: 246 bits (627), Expect = 4.730e-80
Identity = 120/164 (73.17%), Postives = 143/164 (87.20%), Query Frame = 1 
Query:   43 YREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            +REAEQ EKAYQKQDA+F+G KR L KK  KG  MR+V+NVGLGFKTPK A EG+YVDKKCPFTG+VSIRGRILKG+VIS  KM  T+VIRRDYL++  KYRRFEKRHKNM+VHC+PC++NVKEGDIVT+GQCRPL+KTVRFNVL HE  +N +++V+K FR+F
Sbjct:    7 FREAEQTEKAYQKQDAVFIGRKRALAKKSKKG--MRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVIST-KMKRTLVIRRDYLNWCGKYRRFEKRHKNMSVHCSPCFENVKEGDIVTVGQCRPLTKTVRFNVLTHEPAVNQSLNVKKVFRVF 167
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A7S1XVW4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVW4_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.240e-77
Identity = 117/170 (68.82%), Postives = 144/170 (84.71%), Query Frame = 1 
Query:   28 LVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGK-GMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            + P +YREAEQ EKAYQKQDA+FVG KR L   V  GK G+R+VK++GLGFKTP+TA  G+YVDKKCPFTG+VSIRG+ILKG+VIS  KM  TIV+RRDYLH++ KY+R+EKRHKN+T HC+PC+ NVK GD+VTIGQCRPL+KT+RFNVL HE   N +V+V+KQFR+F
Sbjct:    1 MAPKNYREAEQVEKAYQKQDAVFVGTKRSL---VRSGKKGIRYVKSIGLGFKTPETAISGSYVDKKCPFTGNVSIRGKILKGVVIS-NKMKRTIVVRRDYLHFVRKYKRYEKRHKNVTAHCSPCFVNVKPGDVVTIGQCRPLAKTIRFNVLTHEPSTNQSVNVKKQFRVF 166
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A7S0L9L5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9L5_9EUKA)

HSP 1 Score: 238 bits (608), Expect = 3.310e-77
Identity = 119/165 (72.12%), Postives = 141/165 (85.45%), Query Frame = 1 
Query:   40 DYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            D++EA+Q EKAYQKQDAIF+G KRVLGKK +K KGMR+ KN+GLGFKTP  A EG+YVDKKCPFTG+VSIRGRILKG+V+S  KM  T+VIRRDYL YISKYRRF K+H NM+VHC+P + NV EGDIVT+GQCRPL+KTVRFNV+EH    N AV+V+K FR+F
Sbjct:    2 DFKEADQTEKAYQKQDAIFIGRKRVLGKKSSK-KGMRYYKNIGLGFKTPTEAIEGSYVDKKCPFTGNVSIRGRILKGMVVS-NKMKRTVVIRRDYLKYISKYRRFCKKHTNMSVHCSPAFLNVGEGDIVTVGQCRPLAKTVRFNVIEHFPATNKAVNVKKMFRVF 164
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 237 bits (604), Expect = 1.390e-76
Identity = 117/165 (70.91%), Postives = 135/165 (81.82%), Query Frame = 1 
Query:   40 DYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            +Y+EAEQ EKAYQKQD +F+  K   G K  K   MR+ KNVGLG KTPK A EGTYVDKKCPFTGDV+IRGRILKGLVIS  KMT TI++RRDYLHYI KYRR+EKRHKN+ VHC+P +  V EGD+VTIGQCRPLSKTVRFNV+EH   +N A++V+KQFRMF
Sbjct:    4 EYKEAEQTEKAYQKQDGVFIARKNKAGAKNPKP--MRWTKNVGLGIKTPKNAVEGTYVDKKCPFTGDVAIRGRILKGLVIST-KMTRTIIVRRDYLHYIRKYRRYEKRHKNVAVHCSPAFDTVSEGDVVTIGQCRPLSKTVRFNVIEHLPTVNKAINVKKQFRMF 165
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A7S2S9B4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9B4_9STRA)

HSP 1 Score: 233 bits (595), Expect = 3.460e-75
Identity = 116/170 (68.24%), Postives = 141/170 (82.94%), Query Frame = 1 
Query:   28 LVPPDYREAEQHEKAYQKQDAIFVGAKRVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHES-CINTAVSVRKQFRMF 534
            + P +Y+EAEQ EKAYQKQDAIF+G KRVL K+  +GKG RF KNVGLGFKTPK A EG +VDKKCPFTG+VSIRGR++K +VIS  KM NT+++RRDYL ++ KYRRFEKRH NM  H +P ++NVKEGDIV+IGQCRPLSKTVRFNVLE E+   + AV+++K FRMF
Sbjct:    1 MAPVEYKEAEQTEKAYQKQDAIFIGKKRVLSKQ--RGKGFRFYKNVGLGFKTPKKAIEGNFVDKKCPFTGNVSIRGRVMKAMVIST-KMKNTVIVRRDYLRFVKKYRRFEKRHTNMAAHLSPAFENVKEGDIVSIGQCRPLSKTVRFNVLEVEAGASDRAVNIKKSFRMF 167
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BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Match: A0A4D9CZU0_9STRA (Ribosomal_S17_N domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZU0_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.460e-71
Identity = 112/167 (67.07%), Postives = 135/167 (80.84%), Query Frame = 1 
Query:   43 YREAEQHEKAYQKQDAIFVGAK---RVLGKKVAKGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCRPLSKTVRFNVLEHESCINTAVSVRKQFRMF 534
            YREA+QHEKAYQ Q+ +F+  K   R  G K +K  G R+ + VGLGFKTPK A+ GTYVDKKCPFTG VSIRGRILKG+V+S  KM  T++IRRDYLH++SKY RFEKRHKN+  HC+P +  VKEGDIVT+GQCRPLSKTVRFNVL+HE  IN A+S++KQFR+F
Sbjct:   12 YREADQHEKAYQVQNGVFMFGKSSSRKEGSKRSKH-GARWTREVGLGFKTPKEAKAGTYVDKKCPFTGSVSIRGRILKGIVLST-KMNRTVIIRRDYLHWVSKYSRFEKRHKNLAAHCSPAFPQVKEGDIVTVGQCRPLSKTVRFNVLQHEPSINQALSIKKQFRVF 176
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4953.12923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI7.330e-12297.19Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA2.750e-9078.18Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA5.180e-8676.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U3I9_9STRA2.210e-8071.01Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0XZW5_AURAN4.730e-8073.17Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]
A0A7S1XVW4_9STRA1.240e-7768.82Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0L9L5_9EUKA3.310e-7772.12Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4WCA2_9DINO1.390e-7670.91Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S2S9B4_9STRA3.460e-7568.24Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CZU0_9STRA1.460e-7167.07Ribosomal_S17_N domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4953contigL-elsbetiae_contig4953:7246..12608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.3
Seed ortholog evalue3.7e-69
Seed eggNOG ortholog2880.D7FQB6
Preferred nameRPS11
KEGG koko:K02949
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1728@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons7
Model size681
Cds size393
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816494.8479278-UTR-L-elsbetiae_contig4953:7245..73891622816494.8479278-UTR-L-elsbetiae_contig4953:7245..7389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 7246..7389 -
1691683600.6704652-UTR-L-elsbetiae_contig4953:7245..73891691683600.6704652-UTR-L-elsbetiae_contig4953:7245..7389Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 7246..7389 -
1622816494.8983915-UTR-L-elsbetiae_contig4953:8695..87041622816494.8983915-UTR-L-elsbetiae_contig4953:8695..8704Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 8696..8704 -
1691683600.7298439-UTR-L-elsbetiae_contig4953:8695..87041691683600.7298439-UTR-L-elsbetiae_contig4953:8695..8704Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 8696..8704 -
1622816494.9079826-UTR-L-elsbetiae_contig4953:11321..113961622816494.9079826-UTR-L-elsbetiae_contig4953:11321..11396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 11322..11396 -
1691683600.7392201-UTR-L-elsbetiae_contig4953:11321..113961691683600.7392201-UTR-L-elsbetiae_contig4953:11321..11396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 11322..11396 -
1622816494.9199574-UTR-L-elsbetiae_contig4953:12246..122671622816494.9199574-UTR-L-elsbetiae_contig4953:12246..12267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 12247..12267 -
1691683600.7500846-UTR-L-elsbetiae_contig4953:12246..122671691683600.7500846-UTR-L-elsbetiae_contig4953:12246..12267Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 12247..12267 -
1622816494.9347894-UTR-L-elsbetiae_contig4953:12569..126081622816494.9347894-UTR-L-elsbetiae_contig4953:12569..12608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 12570..12608 -
1691683600.7602985-UTR-L-elsbetiae_contig4953:12569..126081691683600.7602985-UTR-L-elsbetiae_contig4953:12569..12608Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 12570..12608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816494.8590653-CDS-L-elsbetiae_contig4953:7389..74251622816494.8590653-CDS-L-elsbetiae_contig4953:7389..7425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 7390..7425 -
1691683600.6822634-CDS-L-elsbetiae_contig4953:7389..74251691683600.6822634-CDS-L-elsbetiae_contig4953:7389..7425Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 7390..7425 -
1622816494.8688414-CDS-L-elsbetiae_contig4953:7688..78391622816494.8688414-CDS-L-elsbetiae_contig4953:7688..7839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 7689..7839 -
1691683600.691389-CDS-L-elsbetiae_contig4953:7688..78391691683600.691389-CDS-L-elsbetiae_contig4953:7688..7839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 7689..7839 -
1622816494.8787649-CDS-L-elsbetiae_contig4953:8170..82531622816494.8787649-CDS-L-elsbetiae_contig4953:8170..8253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 8171..8253 -
1691683600.706057-CDS-L-elsbetiae_contig4953:8170..82531691683600.706057-CDS-L-elsbetiae_contig4953:8170..8253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 8171..8253 -
1622816494.8886023-CDS-L-elsbetiae_contig4953:8572..86951622816494.8886023-CDS-L-elsbetiae_contig4953:8572..8695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 8573..8695 -
1691683600.7184515-CDS-L-elsbetiae_contig4953:8572..86951691683600.7184515-CDS-L-elsbetiae_contig4953:8572..8695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 8573..8695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4953.12923.1prot_L-elsbetiae_contig4953.12923.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4953 7390..8695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4953.12923.1

>prot_L-elsbetiae_contig4953.12923.1 ID=prot_L-elsbetiae_contig4953.12923.1|Name=mRNA_L-elsbetiae_contig4953.12923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKM
TNTIVIRRDYLHYISKYRRFEKRHKNMTVHCAPCWQNVKEGDIVTIGQCR
PLSKTVRFNVLEHESCINTAVSVRKQFRMF*
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mRNA from alignment at L-elsbetiae_contig4953:7246..12608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4953.12923.1 ID=mRNA_L-elsbetiae_contig4953.12923.1|Name=mRNA_L-elsbetiae_contig4953.12923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5363bp|location=Sequence derived from alignment at L-elsbetiae_contig4953:7246..12608- (Laminarionema elsbetiae ELsaHSoW15)
TCTCTCGCATTGACAGGGCATCGACACCTTGTACCTCCGGTGAGACCACG
ATTGCGCTCCTGTGAGATGCAGATACCTCAGGAAGGCCACCGTTTTTTGC
GACGTGTGCTTACTAGTTGAGAGAAAACGGTGGTTTAGTGGAAGGTGGCA
CCCCAGCCAGCCACCTTCCCTAGGTAGGGAACGCTGTTGTGCACCGGCGG
ACCTTGTCCCCGGTCTTCATTAGCTGCCTCACGCCGGTCTTGCGTAGATC
GACTGCCTGCACACATTGCTCATTGATACATCCCTCTCTCGCTCTTCCTG
GTCGACCTAACCTTTTCACCAAAGGCACCATGGGACTCCAGGACTACCGG
GAGGCTGAACAGGTGTGTTCGGGAGACGGGAGGAGTGGTGGTGGATGGGT
GATTCGGTGGCTGAACTGGGGGATTAAGAGCGAATGGGAGAGTGTGCTCT
CCGCACACTTAGGATGGAATGGGGCATGAGATGATTTTGGCTTGTCGGCC
TGTAGTACGCTCGCTCACTTTGAATGGGATGCCCGAAAAATGATCTACAA
AAATCAGTACCTTCAGAGAGCGGCATCCGACCAGGTAACCTCCATTTACA
CTCGTAACGTACCCTGCCCGTCGTAGTTGATTATCTACTCTCCTGCATTC
CGTCGAGTACACCACTGGTTTCATGGAGCTGATGTGGTCGTATTTGTGGT
ATTTAGACAGACAACTGACTACCTTGGTCAGCTCTGCAGCGTTGTGTTAT
CCTCATGTGTACGATGGGTTACAGCAGTAGGTGCCGTCCATGTTACGGAC
CTGTGCGACGACGGGCCACCTCCTGTTCCATGATACGACCGCCCTGCTGG
TGTCAAGCAAGGCTCATCACAGTGTGCAAATATAAGACATTTTGCGGAAT
CTACTCACCTGCGCGAGCATGTGTATCTCCCGACTGCTACTGACTGTAAA
ATGCATTTTATTACAATCTAAATATTTAGACACATGGCCTCTCTCCTCTT
CCCTCCCTCCCTCAACGTTGTTGATAAGAGTTCCACGCCGTGTACCAGCC
CGCCTGTTCCTCTGTTACTTCGTTATTGTTTTATTTCTAGAAATTCACAC
CACACGCTCAAATCCAAACCAACCAGAACAATACAAGCGACCCCACCGAA
AGAAACTAACAACGTGATTTTGCGACACTGCTTGCGGGGGGGGTGCTGTT
TGTTTTTCACAGCACGAGAAGGCGTACCAGAAGCAGGATGCTATCTTCGT
GGGAGCGAAGCGTGTTCTCGGCAAGAAGGTTGCCAAGGTAAGAAAGAACA
CAGTCGGGCGTGTGGAAAGTTGCAGTTGCACGGCAATCGTCTTGTTGGAG
GGAAGACGGGCGCTATGTATTGTTCCGCAGGAGGCGTGAAGACAGGAACA
CGTTTGTAAGGGGGGGAGGAGGGTGGTGAGTTTTGCACGCCAGCTTAACT
CAGCACGCCCAGACATGAGCTCGCGTGCGTCTCGTTGTGGTGTGCCTTTT
GCCATACTGCCTGTGTATGCGGGCCGCATGTCCGGTCGATCACACCTGCC
GATACAAATAGATTTCCCAGTCTCGACTCGCCGGCGACGGATCGAAACGA
GCGAAGCGTACTGCGCAGGGTGTTTGTGGTACCAGCGCTACAATGCAACC
CTTGACTGTTCAAACGCAGACTCAACCCGTCAAGCATGCTTACTATCTAT
GTAAGCCTCCCTCGGTATGTATCTACGTGTACTTCTTGGGGGAGTTTTCA
TCAACGAAGAGATAACCGTCCGTTGTGCCTTGAGCAAGACATTCGTACAC
ACAATACACTTGTTGAATTTTTTTCAGGACCACACCCACTTCGTCTTGGA
GGGTCAAACGTATGACGCACGCCCCCGCCCATGGGGGTACATAGTACATA
GTAGTGTGCGCCCGGTTCCACGGCGGTACGGTAACAACAGTTTCAATAGT
GCGGTGTTCTGTCACGCGCTGAAGCTAAGACGTGCGTTCGTACGACAAAC
AAGCTGCGTCTGCTTCCGAAGGCGACATGCCGGCGTGCGCGTCGGGGGCC
GGGGGGGGGGGGAGGGGGCGATGAATGCTGCCGGCGATGACGAAATGAAA
CGGACTAGAGTTTCTGAAAACAAGCGCAAGCTGACTTGAAGATACACCCT
TGGCTGTCCGAGCCTCAGCAGACCTTCCTTTCCCTTCTTTTGACCCCCCC
CCTTCCTTTCCCCCCCGGTATGTAGTCGAACAAAATATCGATATGTATCG
ATACAGCTGCCAGCTAGACGCCTGTGCATGTATGGCCAAACCACACAAAA
GTTAGTTAGGTTTTGCCGTCAAAGGCGAGGAACGACTGCGTGCTTGTTGA
GACACACAGAAAAACATCAAGGGCTATGACGAAGCAAAGTAAACGGACTA
GAGTTTCAGACTAGCCTCAGGCGGTGTGAAGACAACGTGCTTTTTCCCTG
AGCCTTGACGTTTATATATAAGATCGGGGGGCAGCCCCCTGTACTGTTTT
AGAGAACCGCACGCACGCACACGACCGATTTTTTTTTGTGTTCAGTAAAC
CCATTCTTAAAGTCGGAGCAGCATGTGTTGTCGGACAGTAGCCTGGCTGG
CGCATGCAGCTGCTCAACTACCAAACGCAAGGCTGTTATGTTTCTCGGGC
GTGTTGACATGAAAGCAGGGCAATGACGAAATAGAGTAAACGGACTAGAG
TTTCAGATCAGCCTCCGGCTGTGTGAAGACGACGTGCTTTTTGTCCGAGC
CCTGCTTGCTTTGGATCTGGTGAAGCCTGGCCGGCGTCTGTGTTTGCGGC
GCGCATGGCGTGAAGTTCAGTTTAGCCTTGTTGAGCAGATCTGCTGTGGT
GGAAGAGTCTACGTGATGTTTTCATTGTTTTCTTGGTCTAAGCGGCAGGT
TGGGAAGCACGCCTGCGGCCGACGGCTCGAAGCATTCTACGTAGTTGTTA
CATGGCCGGTAATAGCGCCACATACGGAGAACGAACCGTGACGGAGTAGA
GTAAGCGTACCAGAGGTTCAGATGTGCCGAACACGAACTTTGTACTTCGG
ACACTTTTTCGTGCCTCTAAACGCGAAATATATCTCTCTGTTGTCCCCGT
TGTGCAGTTTACTTGTTGGCCAAAGAACATGTGCTGCTTGCGATGGTGAT
CAAGCAGGCCGCGCCCCCGTTGCGCACGTACGAAGGTAGCACAGCGTGTT
CGTTGCGATCGTCGAAAATGTTCAATGTTTTTCAGACGGCGCTACTTCTG
CTGCCGTGCTGTACATAGAAACACTCATAATACGTACACAGCCCGGCATA
TCTTGTGAGGAAGCGGCGGGTGTGTCACAGCAGTGAGGGGGCAATGACGA
AACAGAGTAAACGGACTAGAGTTTCAGACCAGTTCCGACTGTTTGAAGAC
AACGTGCTTTTTGTCCGAGCCTCCCGCTGACCCTCCGCCTTTCCTAGTCT
CACCTGGCTGTAATGAAGCCCACTTTTCTACACTGGATGCTAAGCACACC
ACACCGGACTCAATAATTCCGTGTCCCCAAGTTTTTTTCTCTAGAGTTTC
TTTCTGGGCCACCTCCCGACCCCGGCTGTCGCGTCCCGATAAAACGCTCG
GCAGTGGAAATCCACGAACGGCGTCATATCCGCCCTTTGTGCTTCACCTC
CGAGAGTCACGCTTCAAATCCGCCTCGCTTCTGAGCGCCCTGTCTCAGCT
GCTGTCGGGAGAAAGCTGTATATTGATATTGTTTCAACCCACACCTCTCC
CTATCCACACTGTTTGTTCGGTGTTCTTGTTGGGTGCCCCGGTCTTTCTC
GTGAGCTAAACCCGACAGATAGACGCCTTCGTGCCTTAACTTGTCTTCTC
GTGCTTCTCTTACTCTCTCTGTGCTTGACTTTGCTCTCGTTTTTTTTCAC
GCAGGGCAAGGGCATGCGGTTCGTGAAGAACGTCGGCCTCGGGTTCAAGA
CCCCCAAGACGGCGAGGGAGGGCACCTACGTCGACAAGAAGTGCCCCTTC
ACCGGCGACGTGTCCATCCGCGGCCGCATCCTCAAGGTAAGGTATTCACA
GAGCGGTGGTCTCTGTGTGCCGACCTGACGGCGCGCGGCCCGATCGAGCC
GACTCGCAACGGCACAAGCGATCTTTCTGTCTTTTGCCTTCGTTGCTGTT
TGGCTGCTGCTGTTGGCCTGTTATACTCTGAAATCTGGTTGCACGATACA
CACAGTTGTAAGGGAAGCGGTGGTCTCCAAATCTGTTCTTGTGCTCAAGT
TTTCTCGTTGAAAGCCTAAGTATTTTCCTACCGTGAACGCTCGGTTCCAA
CCTCTCCCCCTCTGCCCCCTTTCACCGCTCCGCCCCTCGCTTCTATCTCC
GCCAGGGCCTCGTCATCTCGGCCGGGAAGATGACCAACACCATTGTCATC
CGCCGTGACTACTTGCACTACATCAGCAAGTACCGCAGGTAAGCAGAGCA
GGCCGAGCACAACGCACGCACCTCCCGCGGCAAGAAGTTTTGGTCGAGAC
TTCGTGGGCTGGTTATTTTCCGATTAATATTAGGCCGGGCGTTTGCGCGA
ACAGCGATAGCAGTATACAGCGTGGCACACTTTGGCATGCATGCGAACCC
GCTGGCACGCATGTATGTACTCCCGGCGGGATTATTGATGCTTGTTCACT
TTTTCGCCAAGTGTACGCCTCTTGGGAGTGCGGCTGGCGGCTGGCCTGGC
CTTGTTGATTTGTGTAACGCATCTCGTCTCATCGTATCATCCATCTGCCT
ACCTGCCCACATTCAAAAGGTTCGAGAAGCGCCACAAGAACATGACGGTG
CACTGCGCCCCCTGCTGGCAGAACGTGAAGGAGGGTGACATTGTCACCAT
CGGGCAGTGCCGGCCCCTGTCGAAGACCGTGCGCTTCAACGTGCTCGAGC
ACGAGTCGTGCATCAACACGGTGAGCCAGAGAGAGGGTGGTAGTTCCGGA
GTTGGGCCGTCACTGCTGTGCCACATGTCCATGTTTCATGTTTCTGCTCC
GCACGTACATGAACAGCGGAGGTTTACATAGATGCTGACACGAAGTTGCT
GCGCCGCGGCAACGCCGTGAGCATTCCGTTCCGTGCCCCTAGAGTTGCAC
GATTTTATTTCCCCAGTCTCTTGATGTTGATATTTTTCCTTCCGTTCGGT
GTGCCTCGTCGGGGTTTCCCTTGCGATACTCAGGCGGTGTCTGTGCGGAA
GCAGTTCCGTATGTTCTAAGATCCCTGCCGCTTTTTCGGAACACGCTGCA
CTTTCGGGGGGTCGGAAGCCGCCCAAGAAGGAAAAGCGAAGACATGGCCT
GGCGCGTCGAGAACACTCAAAGCTGAAGGGGGGGGGGCTGACTCTCGTCG
CTCGTTTTGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4953:7246..12608-

>mRNA_L-elsbetiae_contig4953.12923.1 ID=mRNA_L-elsbetiae_contig4953.12923.1|Name=mRNA_L-elsbetiae_contig4953.12923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig4953:7246..12608- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTTCGTGAAGAACGTCGGCCTCGGGTTCAAGACCCCCAAGACGGC
GAGGGAGGGCACCTACGTCGACAAGAAGTGCCCCTTCACCGGCGACGTGT
CCATCCGCGGCCGCATCCTCAAGATGCGGTTCGTGAAGAACGTCGGCCTC
GGGTTCAAGACCCCCAAGACGGCGAGGGAGGGCACCTACGTCGACAAGAA
GTGCCCCTTCACCGGCGACGTGTCCATCCGCGGCCGCATCCTCAAGGGCC
TCGTCATCTCGGCCGGGAAGATGACCAACACCATTGTCATCCGCCGTGAC
TACTTGCACTACATCAGCAAGTACCGCAGGGCCTCGTCATCTCGGCCGGG
AAGATGACCAACACCATTGTCATCCGCCGTGACTACTTGCACTACATCAG
CAAGTACCGCAGGTTCGAGAAGCGCCACAAGAACATGACGGTGCACTGCG
CCCCCTGCTGGCAGAACGTGAAGGAGGGTGACATTGTCACCATCGGGCAG
TGCCGGCCCCTGTCGAAGACCGTGCGCTTCAACGTGCTCGAGCACGAGTC
GTGCATCAACACGGTTCGAGAAGCGCCACAAGAACATGACGGTGCACTGC
GCCCCCTGCTGGCAGAACGTGAAGGAGGGTGACATTGTCACCATCGGGCA
GTGCCGGCCCCTGTCGAAGACCGTGCGCTTCAACGTGCTCGAGCACGAGT
CGTGCATCAACACGGCGGTGTCTGTGCGGAAGCAGTTCCGTATGTTCTAA
GCGGTGTCTGTGCGGAAGCAGTTCCGTATGTTCTAA
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