mRNA_L-elsbetiae_contig4953.12922.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4953.12922.1
Unique NamemRNA_L-elsbetiae_contig4953.12922.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: D7FQB5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB5_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 2.900e-124
Identity = 201/276 (72.83%), Postives = 218/276 (78.99%), Query Frame = 3
Query:   33 NNLGAPPSSWSASRLSSWLETDKTLDAEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMRSIHAFLKLQADLEALELSFHGERPPLPGSSVLPVDTTRSPKLPSAAT---------APGAGGTPSSSQNPVSDSGAGVGGVGTSGACSAPWSLPCVSVDAEGNSYFSDKTVALGVDT-GSGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLIIPDGLEL 830
            +NLGAPPSSWSASRLS+WL  D+ L+ EAIDALALCDVDGRMFLEMDEEDLAESDELGLDM+SIHAFLKLQADLEALELS HGERPPLPGSSVLP +T      P               G+ G P  +    S     VGG G+ G  S  WSLPCVSVDAEGNS+F D+ VALG  T GSGIGALS LIPTTGLKFRETPGDYDFDFHCAPARQ +VSLD GV+IEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAV+ K RKSLFL++PD  +L
Sbjct:    2 SNLGAPPSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELSHHGERPPLPGSSVLPFNTANPQPRPXXXXXXXXXXXXETAGSSGEPPCTLGGESS----VGGCGSGGG-SRSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKL 272          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A7S1NNL2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNL2_9EUGL)

HSP 1 Score: 131 bits (329), Expect = 8.370e-34
Identity = 60/109 (55.05%), Postives = 84/109 (77.06%), Query Frame = 3
Query:  495 GNSYFSDKTVALGVDTG-SGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLIIPD 818
            G+SYF+ K++ LG   G + IG+LS  +P TGL  R+TP DYDFD+H AP +QF+V+LDA VEIEV+DG+++V  AG + L EDT G+GHRS++VN +PR+SLF+ + D
Sbjct:    1 GHSYFTTKSIPLGPSHGPNSIGSLSAAMPVTGLVVRDTPADYDFDWHVAPRKQFVVNLDAAVEIEVSDGSKKVLGAGEMFLLEDTEGQGHRSKSVNGQPRRSLFITVAD 109          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A7S4C942_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C942_9EUGL)

HSP 1 Score: 129 bits (324), Expect = 6.470e-33
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  462 WSLPCVSVDAEGNSYFSDKTVALGVDTGSG-IGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVN 779
            W +P V+VD  G SY+S  T+ LG   G+  IGALS ++  T ++ RETPGDY FD+HCAP +QFIV+LD  V++EV+DGTR+V  AG +   EDTWG GH SRAVN
Sbjct:   14 WVIPVVAVDEAGKSYWSSMTIPLGASGGANSIGALSEVMKVTTMQIRETPGDYKFDWHCAPRKQFIVNLDGAVDVEVSDGTRKVVSAGEMFFVEDTWGTGHLSRAVN 120          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A800LVS0_9BACT (Uncharacterized protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A800LVS0_9BACT)

HSP 1 Score: 121 bits (304), Expect = 4.550e-30
Identity = 60/109 (55.05%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  486 DAEGNSYFSDKTVALGVDTGSGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLII 812
            D  G S+F D  + L  DT   IG LS ++  TG+ FR+T GDYDFD+H AP+R+FIV LD  VEI   DG  R+F  G ++LAEDT G+GHRSRAV+ KPRKSLF+++
Sbjct:    9 DGNGQSHFEDVDIPLS-DT-EDIGRLSSVLQATGVIFRKTEGDYDFDWHPAPSRRFIVMLDGSVEITAGDGETRIFNTGDIVLAEDTQGRGHRSRAVDGKPRKSLFILL 115          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A1V5DQE3_9DELT (Uncharacterized protein n=1 Tax=Smithella sp. PtaU1.Bin162 TaxID=1811697 RepID=A0A1V5DQE3_9DELT)

HSP 1 Score: 120 bits (301), Expect = 1.240e-29
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  492 EGNSYFSDKTVALGVDTGSGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLII 812
            +G S+F+D  + L  + G  IG LS  I  TG+ FRETP DYD+D+H AP RQFI+ LDAGVEI V+ G  R+  AG V+L EDT G+GH S+A+N+KPRKS+F+ +
Sbjct:   11 DGESHFADIEIEL--EDGGPIGKLSKKIKATGIIFRETPADYDYDWHNAPQRQFIIMLDAGVEITVSSGETRIVKAGEVLLVEDTKGRGHVSKALNNKPRKSVFITL 115          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A2E1A164_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1A164_9DELT)

HSP 1 Score: 119 bits (298), Expect = 3.380e-29
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  492 EGNSYFSDKTVALGVDTGSGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLII 812
            +G S+F D  V +  D G  IG LS LIP TG+ FRET GDY +++H AP RQ+IV L+  V+IEV DGTRRVF  G ++LAEDT G+GH SRAV  +PRKSLFL +
Sbjct:   11 DGQSHFEDIDVPI-FDHGD-IGKLSKLIPATGVIFRETSGDYHYEWHNAPRRQYIVMLEGEVDIEVGDGTRRVFQTGDLLLAEDTTGQGHLSRAVKGQPRKSLFLTL 115          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A7C7YFX1_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YFX1_9DELT)

HSP 1 Score: 119 bits (298), Expect = 3.380e-29
Identity = 60/108 (55.56%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  489 AEGNSYFSDKTVALGVDTGSGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLII 812
            A+  S+F D  V L  D G  IG +S L P TG+ FRET GDYDF FH AP RQ++++LDA VE+E  DGT+RV   G V+LAEDT G+GHRSRAV+ +PR+S+F+ +
Sbjct:   10 ADDESHFEDIEVDLR-DLGI-IGRISTLEPATGIVFRETEGDYDFGFHNAPRRQYVINLDAAVELETGDGTKRVVGPGEVLLAEDTTGRGHRSRAVDGRPRRSIFVTL 115          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A7C8CI49_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8CI49_9DELT)

HSP 1 Score: 119 bits (297), Expect = 4.710e-29
Identity = 59/108 (54.63%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  492 EGNSYFSDKTVALGVDTGSG-IGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLII 812
            +  S+F D  + L    G G IG++S L   TG+ FRET GDYDF FH AP RQ++++L+AGVEIEV DGTRR+  AG V+LAEDT G+GH SRAV+ +PR+S+F+ +
Sbjct:   11 DNESHFEDLEIPL---KGFGAIGSISSLEGATGIAFRETEGDYDFGFHNAPRRQYVINLNAGVEIEVGDGTRRLLGAGEVLLAEDTTGRGHISRAVDGRPRRSIFVTL 115          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A2V7EX67_9BACT (Uncharacterized protein n=5 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A2V7EX67_9BACT)

HSP 1 Score: 116 bits (291), Expect = 3.480e-28
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  483 VDAEGNSYFSDKTVALGVDTGSGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLII 812
            VD  G S+F D  V L   T +G   LS  +P TG+ FRE   DYD D+H AP RQ+IV+LDAGV+I  +DG  R   AG V+L EDTWGKGHRS+A++ KPR  +F+ +
Sbjct:    8 VDKNGESHFEDMEVPLTESTRAG--RLSARLPATGIIFREVSADYDLDWHPAPRRQYIVNLDAGVQITASDGETRRIGAGEVLLVEDTWGKGHRSKALDGKPRHCIFVPV 115          
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Match: A0A7Y4TWR8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4TWR8_9DELT)

HSP 1 Score: 116 bits (291), Expect = 3.480e-28
Identity = 58/112 (51.79%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  477 VSVDAEGNSYFSDKTVALGVDTGSGIGALSGLIPTTGLKFRETPGDYDFDFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVNDKPRKSLFLII 812
            V   A+  S+F D  + L   +G   G +S L   TG+ FRET GDY+FDFH AP RQ++V+L+  VEIEV DGT+R+   G ++LAEDT G+GH SRAV  KPRKSLF+ +
Sbjct:    6 VYTGADNKSHFEDVEIPL--KSGGKAGFMSDLQKATGVIFRETGGDYNFDFHNAPRRQYVVNLEGEVEIEVGDGTKRILRTGDILLAEDTTGQGHISRAVGGKPRKSLFITL 115          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4953.12922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB5_ECTSI2.900e-12472.83SAM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1NNL2_9EUGL8.370e-3455.05Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4C942_9EUGL6.470e-3356.07Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A800LVS0_9BACT4.550e-3055.05Uncharacterized protein n=2 Tax=FCB group TaxID=17... [more]
A0A1V5DQE3_9DELT1.240e-2954.21Uncharacterized protein n=1 Tax=Smithella sp. PtaU... [more]
A0A2E1A164_9DELT3.380e-2957.94Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A7C7YFX1_9DELT3.380e-2955.56Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7C8CI49_9DELT4.710e-2954.63Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A2V7EX67_9BACT3.480e-2851.82Uncharacterized protein n=5 Tax=unclassified Candi... [more]
A0A7Y4TWR8_9DELT3.480e-2851.79Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4953contigL-elsbetiae_contig4953:3864..6914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue7.1e-22
Seed eggNOG ortholog227086.JGI_V11_71403
Hectar predicted targeting categoryother localisation
EggNOG OGs2DZCW@1,2S6XB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSterile alpha motif, type 2
Ec32 orthologEc-01_006730.1
Exons5
Model size1212
Cds size810
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816494.7398612-UTR-L-elsbetiae_contig4953:3863..38861622816494.7398612-UTR-L-elsbetiae_contig4953:3863..3886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 3864..3886 +
1691683600.6036797-UTR-L-elsbetiae_contig4953:3863..38861691683600.6036797-UTR-L-elsbetiae_contig4953:3863..3886Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 3864..3886 +
1622816494.8119943-UTR-L-elsbetiae_contig4953:6535..69141622816494.8119943-UTR-L-elsbetiae_contig4953:6535..6914Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 6536..6914 +
1691683600.6590426-UTR-L-elsbetiae_contig4953:6535..69141691683600.6590426-UTR-L-elsbetiae_contig4953:6535..6914Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4953 6536..6914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816494.7504783-CDS-L-elsbetiae_contig4953:3886..39791622816494.7504783-CDS-L-elsbetiae_contig4953:3886..3979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 3887..3979 +
1691683600.6138482-CDS-L-elsbetiae_contig4953:3886..39791691683600.6138482-CDS-L-elsbetiae_contig4953:3886..3979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 3887..3979 +
1622816494.763028-CDS-L-elsbetiae_contig4953:4409..45051622816494.763028-CDS-L-elsbetiae_contig4953:4409..4505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 4410..4505 +
1691683600.6233547-CDS-L-elsbetiae_contig4953:4409..45051691683600.6233547-CDS-L-elsbetiae_contig4953:4409..4505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 4410..4505 +
1622816494.7739453-CDS-L-elsbetiae_contig4953:5044..54171622816494.7739453-CDS-L-elsbetiae_contig4953:5044..5417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 5045..5417 +
1691683600.6320667-CDS-L-elsbetiae_contig4953:5044..54171691683600.6320667-CDS-L-elsbetiae_contig4953:5044..5417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 5045..5417 +
1622816494.7837353-CDS-L-elsbetiae_contig4953:5976..61461622816494.7837353-CDS-L-elsbetiae_contig4953:5976..6146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 5977..6146 +
1691683600.6408823-CDS-L-elsbetiae_contig4953:5976..61461691683600.6408823-CDS-L-elsbetiae_contig4953:5976..6146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 5977..6146 +
1622816494.7957988-CDS-L-elsbetiae_contig4953:6457..65351622816494.7957988-CDS-L-elsbetiae_contig4953:6457..6535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 6458..6535 +
1691683600.6499674-CDS-L-elsbetiae_contig4953:6457..65351691683600.6499674-CDS-L-elsbetiae_contig4953:6457..6535Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4953 6458..6535 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4953.12922.1prot_L-elsbetiae_contig4953.12922.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4953 3887..6535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4953.12922.1

>prot_L-elsbetiae_contig4953.12922.1 ID=prot_L-elsbetiae_contig4953.12922.1|Name=mRNA_L-elsbetiae_contig4953.12922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp
MAENNLGAPPSSWSASRLSSWLETDKTLDAEAIDALALCDVDGRMFLEMD
EEDLAESDELGLDMRSIHAFLKLQADLEALELSFHGERPPLPGSSVLPVD
TTRSPKLPSAATAPGAGGTPSSSQNPVSDSGAGVGGVGTSGACSAPWSLP
CVSVDAEGNSYFSDKTVALGVDTGSGIGALSGLIPTTGLKFRETPGDYDF
DFHCAPARQFIVSLDAGVEIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRA
VNDKPRKSLFLIIPDGLEL*
back to top

mRNA from alignment at L-elsbetiae_contig4953:3864..6914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4953.12922.1 ID=mRNA_L-elsbetiae_contig4953.12922.1|Name=mRNA_L-elsbetiae_contig4953.12922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3051bp|location=Sequence derived from alignment at L-elsbetiae_contig4953:3864..6914+ (Laminarionema elsbetiae ELsaHSoW15)
ATCCGCGCCTACACTCGCATACCATGGCAGAGAACAACCTTGGAGCACCT CCTTCGTCCTGGTCGGCGTCACGGCTGAGTTCGTGGCTTGAGACAGATAA AACGCTCGATGCAGAGGTAATATGTGTGTTTGTTCTTCAACTCTTCTTGG GACCGTTAGATAGTCTATCGCTCGTGTCTCTGCTGTTCGGGCGGAGTAGA GGACAGCTGTGTGTTGGTTCGACGAAGAGTGATGGAGAGCTACATGAGTA TTTTCTCTATTGAGTCCAAAACACTTCATACACAGAAGAGTTATCTGCTC ATTGTTTGCTCCACGATGCTCTTCGCCGTACGTGACGGTGTATACCACCT GGCTGTGACGTCAAGTGGGTGCCGAGGGTCCTCAGCAGGGCGGTATCCGA CAATGAGTGCACGAAACTTTCCCATTCCCTAGTTCGTGCGAGTAAACATG CATGTGGATGGCATTGGACAACCGACGACTGGCATCCAAACTGTGTGCAT GTTACTGCGTTTTGGATTACTGCTACTGCTGTGCCTGTACACACAGGCGA TTGACGCCCTTGCGCTTTGCGATGTGGACGGCCGAATGTTCCTGGAGATG GATGAAGAAGATCTCGCGGAGTCGGACGAGCTAGGTCTTGACGTGGGTGT TTTCTTTCCCTTGGTTAGATATACTTTGGCTTTTAGTCAGATAGTGCCAG GGTTTTGATGTAACGTGAAATCTGCAAAAAGGGAGGTACCTCCTCCATGT AGACTAGGTGCATCGGCGGCGGTAGCGGCTACTCACTCTGAGTAAATATT GTAGAGTATTTAGGATTTATTTATGCCATACATTGTGGTTGGAGAATCAC CAGCCAGTTCAGCCCCTCAACAATGAGGTTTCCGATTGCTGGACTACAGT TGTTGGGGTTACTACGGTCGCGAATGCTACTCACCCGTTTGTCTGCGTGT ACGTACATTCGTCTTTACCAACGCTCGTCCGTTGAACTCCCATTCGCACC CCAAGACCTGTTTCTCGGGCCCTCTAGAGCTTTCCTCAAAGGTTCCCCAA GCGCATCTGCTCACCTCGAGCCTGTTCAAACGCTACCCCCCTGCCTCCCT CCCTCCAAACCCATCTTCGCGCCTCTCTTCCTCCGCGCACCCTCCGCCTT CTACCCCCTGCCCCGCCTATGGCCCCAACAGATGAGAAGCATCCACGCGT TTTTGAAGCTGCAGGCAGACCTGGAGGCGCTCGAGCTCTCCTTCCACGGC GAGCGACCGCCGCTACCTGGATCCTCCGTGCTCCCCGTCGACACAACAAG AAGCCCGAAGCTGCCGTCAGCCGCAACGGCACCTGGGGCCGGAGGAACGC CGTCTTCTTCTCAGAATCCTGTCAGCGATAGTGGTGCTGGTGTTGGTGGT GTCGGCACTAGCGGTGCGTGCTCGGCACCCTGGTCGCTTCCGTGTGTGTC GGTGGACGCGGAAGGGAACAGCTACTTTTCCGACAAGACCGTGGCGCTCG GTGTGGACACCGGGTCGGGGATCGGGGCGCTCTCGGGGCTGATCCCCACC ACAGGTGAGGGTATGGTGTATGGTGTGCTGTAAGGTATACTCCTATTGTG TATGTGATTCATGACTGACTTTTTCCTTCGAAATGTTGAAACGCGAGTGG TTTTGTTGTGAGGATTTTTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCGTAATTTGGTAGATTATGCGATATGTCGATTGCCTTTGCAG GGAGCGTGAAAGCAGCCTGCTGCTGCCTACTGCTGCTCCCCGCCAGATCA CCGTCACCTTCCCCTTGCGTTTTTCATTTCGGTGTTCTATGAGTTCGAGA ACCCCCGCCCCGCCTGCTCTCCCCCCTCCCCAAGCACCCACCGACCACCG ACACTCAATAGAGTGTTCCGCCTCGGCTGTGCACACAGTAGGTGTCTAAT GTATCAGGAGTACGCTGTGCGGGTTCATATGAGTAACCGCTACCTCCCTC CGTCTGCTCAAAGCTTGCAACATCAGTACCTGACTCTCACTCTCCCCCGG GGTTATATCCACACACTCGTTGGTGGTTACCTCGCCTGCTTTTTTTTTCG TGGGAGGGGACAGGCCTCAAATTCAGGGAGACTCCCGGGGACTACGACTT CGATTTCCATTGTGCTCCGGCGAGGCAGTTCATCGTGAGCCTGGATGCGG GGGTGGAGATCGAGGTCACAGACGGAACGCGTCGAGTTTTCCCGGCGGGG ACGGTCATGCTTGCGGAGGACACCTGGGGAAAGGTGAGAGAAGGGACCGA TGATCAACCCAACGGCCCAAATTATGTGTGCTCGCGCACAGGCCGTTCGG CTCGACAGGCTTTTTTCTTGGTGAGAGCTGCGTATGTTGGCGTGAGCGGG GAAGGGACAGTACTGCGGTACGCAGATTGTGTCTGTGTGTGTTTTCCCGT CACAGTCAACTGCCGTGTCGCCCAATTATGAACTGTGGACGCTCTCAGGA TTGCAGGATTAGTAGAAACCGACGTAGCGGATTCAACACTCTTCGACCGC GCCTCCTTTTTGTTGTTCACGGCATATTTCGTCGGTGTGCGCAGGGTCAT CGCTCGCGAGCTGTCAATGACAAGCCCAGAAAATCGCTCTTCCTCATCAT CCCGGACGGCCTCGAGCTGTGACCGGAGGCACGCAAATGCCGCCACGAAT ATTTGTTTGGCGCACAGCAGTGTAGAGAGCAATTTTTGTGCTCGACCGCG TGGCATCGACTCTGCTTTGTAGATAACTACGTACTAGTTGGAAGGGTGGA CGGGTTTGTCCCCCGTCAGTGTCCCGAGAGAGGTGTGTGTGTGTTTTTTC AAGTTTATCTACGCACTTTATCCTGAGATCTAAAGGGAAATAAAGGGTCC ACACGACCAACGCAGGCGGGACGACGGCGCTGGGTGAGTTCTTCGCAGAC GACATATGCTGCCTGTGCATGGGAGCCTCGGAGCTTAACACACCCAACAG CTTGGCGGGTGGGGAGGGTCAGGCGGACCGATGGGAAACGACTCTGCTCC A
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig4953:3864..6914+

>mRNA_L-elsbetiae_contig4953.12922.1 ID=mRNA_L-elsbetiae_contig4953.12922.1|Name=mRNA_L-elsbetiae_contig4953.12922.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig4953:3864..6914+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGAGAACAACCTTGGAGCACCTCCTTCGTCCTGGTCGGCGTCACG
GCTGAGTTCGTGGCTTGAGACAGATAAAACGCTCGATGCAGAGATGGCAG
AGAACAACCTTGGAGCACCTCCTTCGTCCTGGTCGGCGTCACGGCTGAGT
TCGTGGCTTGAGACAGATAAAACGCTCGATGCAGAGGCGATTGACGCCCT
TGCGCTTTGCGATGTGGACGGCCGAATGTTCCTGGAGATGGATGAAGAAG
ATCTCGCGGAGTCGGACGAGCTAGGTCTTGACGCGATTGACGCCCTTGCG
CTTTGCGATGTGGACGGCCGAATGTTCCTGGAGATGGATGAAGAAGATCT
CGCGGAGTCGGACGAGCTAGGTCTTGACATGAGAAGCATCCACGCGTTTT
TGAAGCTGCAGGCAGACCTGGAGGCGCTCGAGCTCTCCTTCCACGGCGAG
CGACCGCCGCTACCTGGATCCTCCGTGCTCCCCGTCGACACAACAAGAAG
CCCGAAGCTGCCGTCAGCCGCAACGGCACCTGGGGCCGGAGGAACGCCGT
CTTCTTCTCAGAATCCTGTCAGCGATAGTGGTGCTGGTGTTGGTGGTGTC
GGCACTAGCGGTGCGTGCTCGGCACCCTGGTCGCTTCCGTGTGTGTCGGT
GGACGCGGAAGGGAACAGCTACTTTTCCGACAAGACCGTGGCGCTCGGTG
TGGACACCGGGTCGGGGATCGGGGCGCTCTCGGGGCTGATCCCCACCACA
GATGAGAAGCATCCACGCGTTTTTGAAGCTGCAGGCAGACCTGGAGGCGC
TCGAGCTCTCCTTCCACGGCGAGCGACCGCCGCTACCTGGATCCTCCGTG
CTCCCCGTCGACACAACAAGAAGCCCGAAGCTGCCGTCAGCCGCAACGGC
ACCTGGGGCCGGAGGAACGCCGTCTTCTTCTCAGAATCCTGTCAGCGATA
GTGGTGCTGGTGTTGGTGGTGTCGGCACTAGCGGTGCGTGCTCGGCACCC
TGGTCGCTTCCGTGTGTGTCGGTGGACGCGGAAGGGAACAGCTACTTTTC
CGACAAGACCGTGGCGCTCGGTGTGGACACCGGGTCGGGGATCGGGGCGC
TCTCGGGGCTGATCCCCACCACAGGCCTCAAATTCAGGGAGACTCCCGGG
GACTACGACTTCGATTTCCATTGTGCTCCGGCGAGGCAGTTCATCGTGAG
CCTGGATGCGGGGGTGGAGATCGAGGTCACAGACGGAACGCGTCGAGTTT
TCCCGGCGGGGACGGTCATGCTTGCGGAGGACACCTGGGGAAAGGCCTCA
AATTCAGGGAGACTCCCGGGGACTACGACTTCGATTTCCATTGTGCTCCG
GCGAGGCAGTTCATCGTGAGCCTGGATGCGGGGGTGGAGATCGAGGTCAC
AGACGGAACGCGTCGAGTTTTCCCGGCGGGGACGGTCATGCTTGCGGAGG
ACACCTGGGGAAAGGGTCATCGCTCGCGAGCTGTCAATGACAAGCCCAGA
AAATCGCTCTTCCTCATCATCCCGGACGGCCTCGAGCTGTGAGGTCATCG
CTCGCGAGCTGTCAATGACAAGCCCAGAAAATCGCTCTTCCTCATCATCC
CGGACGGCCTCGAGCTGTGA
back to top