prot_L-elsbetiae_contig495.12919.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig495.12919.1
Unique Nameprot_L-elsbetiae_contig495.12919.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1060
Homology
BLAST of mRNA_L-elsbetiae_contig495.12919.1 vs. uniprot
Match: A0A6H5K2G0_9PHAE (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G0_9PHAE)

HSP 1 Score: 516 bits (1328), Expect = 3.500e-161
Identity = 511/1160 (44.05%), Postives = 581/1160 (50.09%), Query Frame = 0
Query:   32 IFELQSSLLSEDAGAVDEALLRECAAWFRPQHLQDIVIERSEAEGRCGWPGCGNKLPPWRLAAPLVFDLPEGEQLGRFCERSCMAKTRIYLAAIPPTPPYSRENLVRLVCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSQQKSPLPA--------GGSPAGAAAPKAGSDKDMRVGVDGLPEEGES---NKKHAVEAEAAA----AAADKSDADR-----------------------------------------TAAVRAAFEKVSISEQGEEARSAVARASAGAVRDGAAA---------PXXXXXXXXXXXXXXXXAAPLIPAPT---TDWENMRFSRTSG---GGASSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAKTDSLGSGVALGPEKLRNGDETAAAAENPGVAXXXXXXXXXEAGSLPARRRSVSFADGTKDDPEPGAATRPALSARGTAAAKKRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKSVVGGVVERAPTVPTPMEPRMGGGGSSARASAGMVEGHLPKIEADMSFRVMPRGGYPGLGGXXXXXXXXAVGEKSGLGD------YGLGVDGGPLTGDEIEEEXXXXXXXXXXXXXEGNEHDAD--ENDRAIWRETFGEEMPAEVAAESWIDMSAVKDKEMREEFASAIAPSALLWSALSEWVTTETRAVCRAGRSA-----------------------------AAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSPACLNRHRGSLPADFQARKAGAVAEAIETEARRHARHDVGRTRNGKSDKVAENNGS-----GGRS--EGPTLTGALRHSGVSAMVNMHLSQAERALRTTAATVAGDSAGGGDSDSGRRGLHG---AXXXXXXXXSRTKWVWSDTAAKARQGARVPGGWVEEXXXXXXXXXXXVPLLTAA---------TKGDATSGNVPARGAGAAAAAPVAEDATEATPGRTEAADRRXXXXXXXXXXXXXXXXXXXXXXAEPVPVGGAECRRAVAALIDTLD--AGSASAA--ASLSIAQWKVVSLVFLTAAGLGAGAVGQSADDAA--GGAXXXXXXXXXXXXAEACLRLCGPGMGLSAGEFRILVEVMLD 1058
            IFELQSSLL+ED G +DEALLRECAAWF PQHLQDIVIERSEAEGRCGWPGC  KLP WRLAAPLVFDLPEGEQLGRFCER+CMAKT+++++AIPPTPPY+RENLVRL CP                                     P                 G   A  A   AG D+       G  EE  +    +K A   EA A    A +DK D +R                                         TA++RAA E VSI  + E+A SA A +   A  D A           P                 AP  PAPT   T WE++RFSR SG   GG    S                            G    D+   GV       ++              XXXXXXXXX             FA+GT                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKSV+GGVVERAP+VP PME R+GG    AR  AG VEGHLPKIEAD+SFRVMPRGGYPG+GG        A G ++G+ +      +GLGVDGGPLT DE E+E      XXXXXXX          ENDRAIWRETFGEEMPAEV++ SWIDM AV+DKEMREEFAS+IAP ALLWSALSEWV+ ETRAVCRAGR+A                             ++                                SS S +    H GS+PADF ARKAGAVAEAIE E  RHA+ +  R +   +D   +  G      GG +  EGPTLTGALRH+GVS MVNMHL+ AERAL   A T+     GG        G  G            SR KWVWSDTAA ARQGARVPGGWVE+      XXXXX                 K   T  +VPA    +     V+    +A   + E+                           E V  GGAECRRAV+A+IDTL+  AGSAS+A  A LSIAQWKVVS+V LTA GLG G            G A            AEAC RLCG  MG+SA EFRILV+VML+
Sbjct:   12 IFELQSSLLAEDVGEIDEALLRECAAWFCPQHLQDIVIERSEAEGRCGWPGCSKKLPSWRLAAPLVFDLPEGEQLGRFCERACMAKTKVFMSAIPPTPPYTRENLVRLACPPPAPSSAEGSTSVNGDGHGAAGAGAKKVYKRARRRDLPXXXXXXXXXXXXXXXXXGSVVADNAGEGAGVDRQEGGSEKGAGEEAPALAVPEKQAAAGEAVASSPAAVSDKGDEERVGTPAEASDIASGSSGRXXXXXXXXXXXXXXXXXDASGEDATASIRAALESVSIYAEEEDACSAAATS---APVDAAXXXXXXXXXXXPASDVANVREVASTTAVKAPA-PAPTPSRTAWESVRFSRPSGSSSGGGGRCSASVVSRHASLAAAVAETATMDADNYSPSGGTVPDARSGGV-------KSFSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEGTXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKSVLGGVVERAPSVPAPMEVRVGG---RARGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGGGGLGF--AAGGQAGVEEAKDAREFGLGVDGGPLTADEFEDEKEMEEVXXXXXXXXXXXXXXXXXENDRAIWRETFGEEMPAEVSSGSWIDMDAVRDKEMREEFASSIAPFALLWSALSEWVSPETRAVCRAGRAAXXXXXXXXXXXXXPLSSAGKAKTSGVNGRSSSEIGDVAAEPASSPAITAASCCDVSEQSPRIDSSHSSSASPGHFGSVPADFLARKAGAVAEAIEAEMSRHAKRNRDRRKANPNDSPMKGTGDSSARGGGTTVGEGPTLTGALRHTGVSTMVNMHLALAERALIAAATTL--HVRGGXXXXXXXXGCSGILQTSGQHNNMRSRKKWVWSDTAAGARQGARVPGGWVEKEGPTAAXXXXXXXXXXXXXXXXXXXXKAKEGTTGDDVPAVATASGTGTTVSGKHADAETNQRESP--AISVAGRQTGKAPAAEPAAAAAAGEHVAGGGAECRRAVSAVIDTLNVAAGSASSATAADLSIAQWKVVSVVLLTAVGLGTGXXXXXXXXXXXXGAAAPRVTGEEAEVAAEACSRLCGEEMGVSAREFRILVDVMLE 1148          
BLAST of mRNA_L-elsbetiae_contig495.12919.1 vs. uniprot
Match: D8LG47_ECTSI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG47_ECTSI)

HSP 1 Score: 481 bits (1237), Expect = 7.700e-151
Identity = 469/1116 (42.03%), Postives = 530/1116 (47.49%), Query Frame = 0
Query:   16 MKKPAAQEIKRKIDSKIFELQSSLLSEDAGAVDEALLRECAAWFRPQHLQDIVIERSEAEGRCGWPGCGNKLPPWRLAAPLVFDLPEGEQLGRFCERSCMA----KTRIYLAAIPPTPPYSRENLVRLVCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSQQKSPLPAGGSPAGAAAPKAGSDKDMRVGVDGLPEEGESNKKHAVEAEAAAAAADKSDADRTAAVRAAFEKVSISEQGEEARSAVARASAGAVRDGAAAPXXXXXXXXXXXXXXXXAAPLIPAPTTDWENMRFSRTSGGGASSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAKTDSLGSGVALGPEKLRNGDETAAAAENPGVAXXXXXXXXXEAGSLPARRRSVSFADGTKD-DPEPGAATRPALSARGTAAAKKRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKSVVGGVVERAPTVPTPMEPRMGGGGSSARASAGMVEGHLPKIEADMSFRVMPRGGYPGLGGXXXXXXXXA----VGEKSGLGDYGLGVDGGPLTGDEIEEEXXXXXXXXXXXXXEGNEHDADENDRAIWRETFGEEMPAEVAAESWIDMSAVKDKEMREEFASAIAPSALLWSALSEWVTTETRAVCRAGRSA-------------------------------AAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSPACLNRHRGSLPADFQARKAGAVAEAIETEARRHARHDVGRTRNGKSDKVAENNGS-----GGRS--EGPTLTGALRHSGVSAMVNMHLSQAERALRTTAATVAGDSAGGGDSDS---GRRGLHGAXXXXXXXXSRTKWVWSDTAAKARQGARVPGGWVEEXXXXXXXXXXX---VPLLT------AATKGDATSGNVPARGAGAAAAAPVAEDATEATPGRTEAADRRXXXXXXXXXXXXXXXXXXXXXXAEP---------VPVGGAECRRAVAALIDTLDA--GSASAA--ASLSIAQWKVVSLVFLTAAGLGAGAVGQSADDAAGGAXXXXXXXXXXXXA-EACLRLCGPGMGLSAGEFRILVEVMLD 1058
            MKKP AQE+KRKIDSKIF+LQSSLL+ED G +DEALLRECAAWF PQHLQDIVIERSEAEGRCGWPGCGNKLP WRLAAPLVFDLPEGEQLGRFCERSCMA     T   +A   P P  S                                               P ++ SPLP                                                          R+A+  V +                                              +P  T   E+ R +                                        + +   L  G  L  E+                             SLP R R ++ A+ T   +     AT P      TAA     A      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          RKSV+GGVVERAP+VP PME R+GG    A+  AG VEGHLPKIEAD+SFRVMPRGGYPG+GGXXXXXXXX     V E  G  +YGLGVDGGPLT DE+E+E XXXXXXXXXX            D AIWRETFGEEMPAEV++ SWIDM AV+DKEMREEFAS+IAP ALLWSALSEWV+ ETRAVC+AGR+A                               +                                 SS S +    H G +PADFQARKAGAVAEAIE E  RHA+ +  R +   +D   +  G      GG +  EGPTLTGALRH+GVS MVNMHL+QAERAL   A T+     GG        GR G+           SR KW+WSD A  ARQGARVPGGWVEE              VPL            G+ T  +VPA          VA  +   T  R E AD                        AEP         V  GGAECRRAVAA+IDTL+A  GSAS+A  A LSIAQWKVVS+V LTA GLGAGA+G          X           A EAC RLCG  MG+SA EFRILV+VML+
Sbjct:    1 MKKPTAQEVKRKIDSKIFQLQSSLLAEDVGEIDEALLRECAAWFCPQHLQDIVIERSEAEGRCGWPGCGNKLPSWRLAAPLVFDLPEGEQLGRFCERSCMADPPASTATVMAPQEPVPRRSTSG--------------------------------------------PGEETSPLP----------------------------------------------------------RSAYLLVVV-------------------------------LLLQQIVLLPITPARVPVSTARREDRRRAPV--------------------------------------KKRRPLLFQGSKLLMERPP---------------------------SLP-RPRFLTKAETTSAWERRQRQATSP------TAAVVVEKAWQQARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAAAA---RKSVLGGVVERAPSVPAPMEVRVGG---RAQGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGXXXXXXXXXXXXXVEEAKGAREYGLGVDGGPLTADEVEDEKXXXXXXXXXX------------DGAIWRETFGEEMPAEVSSGSWIDMDAVRDKEMREEFASSIAPFALLWSALSEWVSPETRAVCQAGRAAXXXXXXXXXXXXXXSPLPSAGKAKTGGVNGRSLSEIGDVAAEPAGSPAITGASCCDVSEQGPRIDSSHSSSASPGHLGPVPADFQARKAGAVAEAIEAEMSRHAKRNRDRRKANANDSPNKGTGDSCARGGGATVGEGPTLTGALRHTGVSTMVNMHLAQAERALIAAAPTL--HVRGGXXXXXXXXGRSGILQTSGQHNNVGSRKKWIWSDKATGARQGARVPGGWVEEEGATAAAAAVAAEAVPLKAPPAGGVCKANGETTGDDVPA----------VATASGTGTTARGENADAETNQRESSAVALEGRQTREAPA-AEPAAAAAAGEHVAGGGAECRRAVAAVIDTLNAAVGSASSATAADLSIAQWKVVSVVLLTAVGLGAGAIGXXXXXXXXXXXAPGVTGEEAEVAAEACARLCGAEMGVSAREFRILVDVMLE 880          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig495.12919.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2G0_9PHAE3.500e-16144.05RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
D8LG47_ECTSI7.700e-15142.03RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007308Rtr1/RPAP2 domainPFAMPF04181RPAP2_Rtr1coord: 58..123
e-value: 6.0E-5
score: 23.3
IPR007308Rtr1/RPAP2 domainPROSITEPS51479ZF_RTR1coord: 54..134
score: 13.966
IPR038534Rtr1/RPAP2 domain superfamilyGENE3D1.25.40.820coord: 5..150
e-value: 3.1E-9
score: 38.6
IPR039693Rtr1/RPAP2PANTHERPTHR14732UNCHARACTERIZEDcoord: 20..677

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig495contigL-elsbetiae_contig495:24615..30545 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig495.12919.1mRNA_L-elsbetiae_contig495.12919.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig495 24615..30545 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig495.12919.1 ID=prot_L-elsbetiae_contig495.12919.1|Name=mRNA_L-elsbetiae_contig495.12919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1060bp
CYKKTTLHSHTSPVAMKKPAAQEIKRKIDSKIFELQSSLLSEDAGAVDEA
LLRECAAWFRPQHLQDIVIERSEAEGRCGWPGCGNKLPPWRLAAPLVFDL
PEGEQLGRFCERSCMAKTRIYLAAIPPTPPYSRENLVRLVCPPPTAASAG
ESSGGDGVAGAKGGGTKKVYRRPRRRDIPPSQQKSPLPAGGSPAGAAAPK
AGSDKDMRVGVDGLPEEGESNKKHAVEAEAAAAAADKSDADRTAAVRAAF
EKVSISEQGEEARSAVARASAGAVRDGAAAPAPAASAATVTSTAAAPAAP
LIPAPTTDWENMRFSRTSGGGASSTSASATSAVSLHASLAAAAAETAAAN
AAGAGEAKTDSLGSGVALGPEKLRNGDETAAAAENPGVAQESPSAAPEEA
GSLPARRRSVSFADGTKDDPEPGAATRPALSARGTAAAKKRAAAVAAAAA
AGKGRAAGTRRRGGRGGRGSGGASSGRGRGKAAAPAPAPPRKSVVGGVVE
RAPTVPTPMEPRMGGGGSSARASAGMVEGHLPKIEADMSFRVMPRGGYPG
LGGGAAAAAAAAVGEKSGLGDYGLGVDGGPLTGDEIEEEAEEEEEEGGGG
GGEGNEHDADENDRAIWRETFGEEMPAEVAAESWIDMSAVKDKEMREEFA
SAIAPSALLWSALSEWVTTETRAVCRAGRSAAAMAQAAVAAAAAVAVTPA
IAAENDGGGDAGTGNSSSSPACLNRHRGSLPADFQARKAGAVAEAIETEA
RRHARHDVGRTRNGKSDKVAENNGSGGRSEGPTLTGALRHSGVSAMVNMH
LSQAERALRTTAATVAGDSAGGGDSDSGRRGLHGAGGGDNNSGSRTKWVW
SDTAAKARQGARVPGGWVEEEAAAATLAAAAVPLLTAATKGDATSGNVPA
RGAGAAAAAPVAEDATEATPGRTEAADRRRAEKKTEDFAAAASAAAAAAA
AAEPVPVGGAECRRAVAALIDTLDAGSASAAASLSIAQWKVVSLVFLTAA
GLGAGAVGQSADDAAGGAAGGVSAEEAAGGAEACLRLCGPGMGLSAGEFR
ILVEVMLDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007308Rtr1/RPAP2_dom
IPR038534Rtr1/RPAP2_sf
IPR039693Rtr1/RPAP2