mRNA_L-elsbetiae_contig495.12919.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig495.12919.1 vs. uniprot
Match: A0A6H5K2G0_9PHAE (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2G0_9PHAE) HSP 1 Score: 516 bits (1328), Expect = 3.500e-161 Identity = 511/1160 (44.05%), Postives = 581/1160 (50.09%), Query Frame = 1 Query: 94 IFELQSSLLSEDAGAVDEALLRECAAWFRPQHLQDIVIERSEAEGRCGWPGCGNKLPPWRLAAPLVFDLPEGEQLGRFCERSCMAKTRIYLAAIPPTPPYSRENLVRLVCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSQQKSPLPA--------GGSPAGAAAPKAGSDKDMRVGVDGLPEEGES---NKKHAVEAEAAA----AAADKSDADR-----------------------------------------TAAVRAAFEKVSISEQGEEARSAVARASAGAVRDGAAA---------PXXXXXXXXXXXXXXXXAAPLIPAPT---TDWENMRFSRTSG---GGASSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAKTDSLGSGVALGPEKLRNGDETAAAAENPGVAXXXXXXXXXEAGSLPARRRSVSFADGTKDDPEPGAATRPALSARGTAAAKKRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKSVVGGVVERAPTVPTPMEPRMGGGGSSARASAGMVEGHLPKIEADMSFRVMPRGGYPGLGGXXXXXXXXAVGEKSGLGD------YGLGVDGGPLTGDEIEEEXXXXXXXXXXXXXEGNEHDAD--ENDRAIWRETFGEEMPAEVAAESWIDMSAVKDKEMREEFASAIAPSALLWSALSEWVTTETRAVCRAGRSA-----------------------------AAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSPACLNRHRGSLPADFQARKAGAVAEAIETEARRHARHDVGRTRNGKSDKVAENNGS-----GGRS--EGPTLTGALRHSGVSAMVNMHLSQAERALRTTAATVAGDSAGGGDSDSGRRGLHG---AXXXXXXXXSRTKWVWSDTAAKARQGARVPGGWVEEXXXXXXXXXXXVPLLTAA---------TKGDATSGNVPARGAGAAAAAPVAEDATEATPGRTEAADRRXXXXXXXXXXXXXXXXXXXXXXAEPVPVGGAECRRAVAALIDTLD--AGSASAA--ASLSIAQWKVVSLVFLTAAGLGAGAVGQSADDAA--GGAXXXXXXXXXXXXAEACLRLCGPGMGLSAGEFRILVEVMLD 3174 IFELQSSLL+ED G +DEALLRECAAWF PQHLQDIVIERSEAEGRCGWPGC KLP WRLAAPLVFDLPEGEQLGRFCER+CMAKT+++++AIPPTPPY+RENLVRL CP P G A A AG D+ G EE + +K A EA A A +DK D +R TA++RAA E VSI + E+A SA A + A D A P AP PAPT T WE++RFSR SG GG S G D+ GV ++ XXXXXXXXX FA+GT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKSV+GGVVERAP+VP PME R+GG AR AG VEGHLPKIEAD+SFRVMPRGGYPG+GG A G ++G+ + +GLGVDGGPLT DE E+E XXXXXXX ENDRAIWRETFGEEMPAEV++ SWIDM AV+DKEMREEFAS+IAP ALLWSALSEWV+ ETRAVCRAGR+A ++ SS S + H GS+PADF ARKAGAVAEAIE E RHA+ + R + +D + G GG + EGPTLTGALRH+GVS MVNMHL+ AERAL A T+ GG G G SR KWVWSDTAA ARQGARVPGGWVE+ XXXXX K T +VPA + V+ +A + E+ E V GGAECRRAV+A+IDTL+ AGSAS+A A LSIAQWKVVS+V LTA GLG G G A AEAC RLCG MG+SA EFRILV+VML+ Sbjct: 12 IFELQSSLLAEDVGEIDEALLRECAAWFCPQHLQDIVIERSEAEGRCGWPGCSKKLPSWRLAAPLVFDLPEGEQLGRFCERACMAKTKVFMSAIPPTPPYTRENLVRLACPPPAPSSAEGSTSVNGDGHGAAGAGAKKVYKRARRRDLPXXXXXXXXXXXXXXXXXGSVVADNAGEGAGVDRQEGGSEKGAGEEAPALAVPEKQAAAGEAVASSPAAVSDKGDEERVGTPAEASDIASGSSGRXXXXXXXXXXXXXXXXXDASGEDATASIRAALESVSIYAEEEDACSAAATS---APVDAAXXXXXXXXXXXPASDVANVREVASTTAVKAPA-PAPTPSRTAWESVRFSRPSGSSSGGGGRCSASVVSRHASLAAAVAETATMDADNYSPSGGTVPDARSGGV-------KSFSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEGTXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARKSVLGGVVERAPSVPAPMEVRVGG---RARGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGGGGLGF--AAGGQAGVEEAKDAREFGLGVDGGPLTADEFEDEKEMEEVXXXXXXXXXXXXXXXXXENDRAIWRETFGEEMPAEVSSGSWIDMDAVRDKEMREEFASSIAPFALLWSALSEWVSPETRAVCRAGRAAXXXXXXXXXXXXXPLSSAGKAKTSGVNGRSSSEIGDVAAEPASSPAITAASCCDVSEQSPRIDSSHSSSASPGHFGSVPADFLARKAGAVAEAIEAEMSRHAKRNRDRRKANPNDSPMKGTGDSSARGGGTTVGEGPTLTGALRHTGVSTMVNMHLALAERALIAAATTL--HVRGGXXXXXXXXGCSGILQTSGQHNNMRSRKKWVWSDTAAGARQGARVPGGWVEKEGPTAAXXXXXXXXXXXXXXXXXXXXKAKEGTTGDDVPAVATASGTGTTVSGKHADAETNQRESP--AISVAGRQTGKAPAAEPAAAAAAGEHVAGGGAECRRAVSAVIDTLNVAAGSASSATAADLSIAQWKVVSVVLLTAVGLGTGXXXXXXXXXXXXGAAAPRVTGEEAEVAAEACSRLCGEEMGVSAREFRILVDVMLE 1148
BLAST of mRNA_L-elsbetiae_contig495.12919.1 vs. uniprot
Match: D8LG47_ECTSI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG47_ECTSI) HSP 1 Score: 481 bits (1237), Expect = 7.700e-151 Identity = 469/1116 (42.03%), Postives = 530/1116 (47.49%), Query Frame = 1 Query: 46 MKKPAAQEIKRKIDSKIFELQSSLLSEDAGAVDEALLRECAAWFRPQHLQDIVIERSEAEGRCGWPGCGNKLPPWRLAAPLVFDLPEGEQLGRFCERSCMA----KTRIYLAAIPPTPPYSRENLVRLVCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPPSQQKSPLPAGGSPAGAAAPKAGSDKDMRVGVDGLPEEGESNKKHAVEAEAAAAAADKSDADRTAAVRAAFEKVSISEQGEEARSAVARASAGAVRDGAAAPXXXXXXXXXXXXXXXXAAPLIPAPTTDWENMRFSRTSGGGASSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAKTDSLGSGVALGPEKLRNGDETAAAAENPGVAXXXXXXXXXEAGSLPARRRSVSFADGTKD-DPEPGAATRPALSARGTAAAKKRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRKSVVGGVVERAPTVPTPMEPRMGGGGSSARASAGMVEGHLPKIEADMSFRVMPRGGYPGLGGXXXXXXXXA----VGEKSGLGDYGLGVDGGPLTGDEIEEEXXXXXXXXXXXXXEGNEHDADENDRAIWRETFGEEMPAEVAAESWIDMSAVKDKEMREEFASAIAPSALLWSALSEWVTTETRAVCRAGRSA-------------------------------AAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSSPACLNRHRGSLPADFQARKAGAVAEAIETEARRHARHDVGRTRNGKSDKVAENNGS-----GGRS--EGPTLTGALRHSGVSAMVNMHLSQAERALRTTAATVAGDSAGGGDSDS---GRRGLHGAXXXXXXXXSRTKWVWSDTAAKARQGARVPGGWVEEXXXXXXXXXXX---VPLLT------AATKGDATSGNVPARGAGAAAAAPVAEDATEATPGRTEAADRRXXXXXXXXXXXXXXXXXXXXXXAEP---------VPVGGAECRRAVAALIDTLDA--GSASAA--ASLSIAQWKVVSLVFLTAAGLGAGAVGQSADDAAGGAXXXXXXXXXXXXA-EACLRLCGPGMGLSAGEFRILVEVMLD 3174 MKKP AQE+KRKIDSKIF+LQSSLL+ED G +DEALLRECAAWF PQHLQDIVIERSEAEGRCGWPGCGNKLP WRLAAPLVFDLPEGEQLGRFCERSCMA T +A P P S P ++ SPLP R+A+ V + +P T E+ R + + + L G L E+ SLP R R ++ A+ T + AT P TAA A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RKSV+GGVVERAP+VP PME R+GG A+ AG VEGHLPKIEAD+SFRVMPRGGYPG+GGXXXXXXXX V E G +YGLGVDGGPLT DE+E+E XXXXXXXXXX D AIWRETFGEEMPAEV++ SWIDM AV+DKEMREEFAS+IAP ALLWSALSEWV+ ETRAVC+AGR+A + SS S + H G +PADFQARKAGAVAEAIE E RHA+ + R + +D + G GG + EGPTLTGALRH+GVS MVNMHL+QAERAL A T+ GG GR G+ SR KW+WSD A ARQGARVPGGWVEE VPL G+ T +VPA VA + T R E AD AEP V GGAECRRAVAA+IDTL+A GSAS+A A LSIAQWKVVS+V LTA GLGAGA+G X A EAC RLCG MG+SA EFRILV+VML+ Sbjct: 1 MKKPTAQEVKRKIDSKIFQLQSSLLAEDVGEIDEALLRECAAWFCPQHLQDIVIERSEAEGRCGWPGCGNKLPSWRLAAPLVFDLPEGEQLGRFCERSCMADPPASTATVMAPQEPVPRRSTSG--------------------------------------------PGEETSPLP----------------------------------------------------------RSAYLLVVV-------------------------------LLLQQIVLLPITPARVPVSTARREDRRRAPV--------------------------------------KKRRPLLFQGSKLLMERPP---------------------------SLP-RPRFLTKAETTSAWERRQRQATSP------TAAVVVEKAWQQARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPAAAA---RKSVLGGVVERAPSVPAPMEVRVGG---RAQGGAGAVEGHLPKIEADLSFRVMPRGGYPGVGGXXXXXXXXXXXXXVEEAKGAREYGLGVDGGPLTADEVEDEKXXXXXXXXXX------------DGAIWRETFGEEMPAEVSSGSWIDMDAVRDKEMREEFASSIAPFALLWSALSEWVSPETRAVCQAGRAAXXXXXXXXXXXXXXSPLPSAGKAKTGGVNGRSLSEIGDVAAEPAGSPAITGASCCDVSEQGPRIDSSHSSSASPGHLGPVPADFQARKAGAVAEAIEAEMSRHAKRNRDRRKANANDSPNKGTGDSCARGGGATVGEGPTLTGALRHTGVSTMVNMHLAQAERALIAAAPTL--HVRGGXXXXXXXXGRSGILQTSGQHNNVGSRKKWIWSDKATGARQGARVPGGWVEEEGATAAAAAVAAEAVPLKAPPAGGVCKANGETTGDDVPA----------VATASGTGTTARGENADAETNQRESSAVALEGRQTREAPA-AEPAAAAAAGEHVAGGGAECRRAVAAVIDTLNAAVGSASSATAADLSIAQWKVVSVVLLTAVGLGAGAIGXXXXXXXXXXXAPGVTGEEAEVAAEACARLCGAEMGVSAREFRILVDVMLE 880 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig495.12919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig495.12919.1 >prot_L-elsbetiae_contig495.12919.1 ID=prot_L-elsbetiae_contig495.12919.1|Name=mRNA_L-elsbetiae_contig495.12919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1060bp CYKKTTLHSHTSPVAMKKPAAQEIKRKIDSKIFELQSSLLSEDAGAVDEAback to top mRNA from alignment at L-elsbetiae_contig495:24615..30545- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig495.12919.1 ID=mRNA_L-elsbetiae_contig495.12919.1|Name=mRNA_L-elsbetiae_contig495.12919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5931bp|location=Sequence derived from alignment at L-elsbetiae_contig495:24615..30545- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig495:24615..30545- >mRNA_L-elsbetiae_contig495.12919.1 ID=mRNA_L-elsbetiae_contig495.12919.1|Name=mRNA_L-elsbetiae_contig495.12919.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6360bp|location=Sequence derived from alignment at L-elsbetiae_contig495:24615..30545- (Laminarionema elsbetiae ELsaHSoW15)back to top |