mRNA_L-elsbetiae_contig4948.12915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4948.12915.1
Unique NamemRNA_L-elsbetiae_contig4948.12915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 7.380e-47
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   25 QVLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSAIGVEQV 390
            QVLA+I EP LDVL N ++ I++LLRGLARVAFLLLF+YR  KT F PGQL HDLQATIR  F++V EAQ  CP E+LYLWM GTDGLENLFA VR LTHA NVDAKE  ERF + IGVEQV
Sbjct:   33 QVLASITEPLLDVLLNSEEKISELLRGLARVAFLLLFVYRMKKTRFKPGQLDHDLQATIRLLFYVVLEAQVRCPRERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIERFGAVIGVEQV 154          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A074RND4_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074RND4_9AGAM)

HSP 1 Score: 105 bits (262), Expect = 5.190e-23
Identity = 58/175 (33.14%), Postives = 96/175 (54.86%), Query Frame = 1
Query:   28 VLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR 552
            +L  ++  F     NP  +++  L  L+  A LL  LYR    +F+ GQLY+D+Q TI+  +  V ++Q++ P   +YL   GTD LE  F+T+R +TH RN+D  +L +R  +A  +++++ + P L R S RL+      +DHTN   +     A++  +R     SCW  G+
Sbjct:  400 ILGELLHSFTQPFTNPALSLSQQLTHLSTCAHLLFALYRLNGGSFISGQLYYDVQTTIKTAYFTVAKSQQIDPDGPVYLLQTGTDRLEQRFSTMRTMTHDRNMDIVQLADRAEAAQYIDEIYARNPDLYRGSYRLSLDGNTGIDHTNPASWTGDVTASSAGIR-----SCWSAGQ 569          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A066V8D5_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066V8D5_9AGAM)

HSP 1 Score: 101 bits (251), Expect = 1.370e-21
Identity = 60/184 (32.61%), Postives = 91/184 (49.46%), Query Frame = 1
Query:    1 NALLSFISQVLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR 552
            N     + ++L A   P+ D    P  ++++ +  L++   LL  LYR   T F+PGQL++D+QA+I+     V + Q + P    YL   GTD LEN F T R  T  RN D  ++ ER +    ++Q+F   P   RT  RL+   +  +DHTN   +       N  V   DL +CW  G+
Sbjct:  390 NKAFVLLGELLGAFALPYSD----PTLSLSEQITSLSKCGHLLYSLYRINGTKFLPGQLFYDIQASIKNAVFCVAKTQLISPNLPFYLLQTGTDRLENRFGTYRTTTSDRNGDLLQMSERAAGVQLIDQIFADHPRWNRTPYRLSLDGRSGVDHTNPASW-----TGNVTVGKTDLYACWLHGQ 564          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A066VD41_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066VD41_9AGAM)

HSP 1 Score: 101 bits (251), Expect = 1.570e-21
Identity = 58/175 (33.14%), Postives = 92/175 (52.57%), Query Frame = 1
Query:   28 VLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR 552
            +L  ++  F     NP  +++  L  L+  A LL  LYR     F+ GQLY+D+Q TI+  +  V ++Q + P   +YL   GTD LE  FAT+  +TH RN+D  +L +R  +A  V++++ + P L + S RL+      +DHTN   +     A+   +R     SCW  G+
Sbjct:  443 ILGELLHSFTQPFTNPTLSLSQQLTHLSTCAHLLFALYRLNGGAFISGQLYYDVQTTIKTAYFTVAKSQEIDPEGPVYLLQTGTDRLEQRFATMWTMTHDRNMDIVQLADRAEAAQYVDEIYARNPDLYQGSYRLSLDGNTGIDHTNPASWTGDVTASGAGIR-----SCWSTGQ 612          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A0K6GBF2_9AGAM (Uncharacterized protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6GBF2_9AGAM)

HSP 1 Score: 99.8 bits (247), Expect = 5.590e-21
Identity = 62/178 (34.83%), Postives = 91/178 (51.12%), Query Frame = 1
Query:   19 ISQVLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR 552
            + ++L A I P+      P  ++   +  LA+ AF+L  L+R   T F+ GQLY+D+Q TI+     + + Q L P E  YL   GTD LENLF   R  +H RN+D  +L ER S+A  V+ +  + P   R   RL+   +  +DH N R +       +  V +VDL   W  GR
Sbjct:  420 LGELLYAFISPY----TVPSMSLLQQVIYLAKCAFILFALFRLDGTRFITGQLYYDIQTTIKTAMFSIAKMQVLAPREPFYLIQLGTDRLENLFGIYRTASHDRNLDILQLAERSSAAQEVDNILAEYPDYDRKPYRLSLKGELGIDHLNPRSW-----TGDVRVCNVDLQKSWSAGR 588          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A066W3Y0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066W3Y0_9AGAM)

HSP 1 Score: 98.6 bits (244), Expect = 1.390e-20
Identity = 58/180 (32.22%), Postives = 98/180 (54.44%), Query Frame = 1
Query:   19 ISQVLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSA--IGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR 552
            + Q + + + PF D+      ++++ L  L++   LL  LYR  ++ F+ GQLY+D+Q++I++    V + + L P    YL   G D LEN FAT R ++H RN+D  +L +  +SA  I  + V+ + P L +T  RL+ +    +DHTN R +       +  V +VD+ + W  GR
Sbjct:  497 LGQFIDSFVRPFTDL----SLSLSEQLVLLSKCGHLLFVLYRLNRSQFMSGQLYYDIQSSIKSAHFCVAKTKILDPHAPFYLLQCGDDRLENRFATFRTMSHDRNMDLLQLADHSASAQHISADPVYVRNPDLNQTPYRLSATGSTGIDHTNPRSW-----TGDVSVANVDMNATWSQGR 667          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.230e-19
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   25 QVLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLV 222
            QVLA+I EP LDVL  P+KTI++LLR LARVAFLLLF+YR  KT F+P QLYHDLQATIR  F++V
Sbjct:  270 QVLASITEPLLDVLLTPEKTISELLRELARVAFLLLFVYRMNKTRFIPDQLYHDLQATIRVLFYVV 335          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A066V2E9_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066V2E9_9AGAM)

HSP 1 Score: 93.6 bits (231), Expect = 7.490e-19
Identity = 59/178 (33.15%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   19 ISQVLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR 552
            + Q+L   + PF      P  +++D +  L+    LL  LY       +PGQL++D+QATI+       + Q L P    YL   GTD LE+ F T R  T  RN D  ++ ER +SA  ++++F   P   RT  RL+   K  +DHTN   +       +  V  VDL  CW  G+
Sbjct:  661 LGQLLGLFVLPF----TAPSMSLSDQIASLSTCGHLLYALYSIDGPKLLPGQLFYDIQATIKNAIFCTAKTQLLGPDLPFYLLQTGTDRLESRFGTFRTTTSDRNGDILQMCERAASAQHIDEIFAAHPDWNRTPYRLSLDGKSGVDHTNPASW-----IGDVIVGHVDLHKCWMHGQ 829          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: UPI0004623679 (uncharacterized protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004623679)

HSP 1 Score: 87.4 bits (215), Expect = 4.550e-18
Identity = 52/168 (30.95%), Postives = 86/168 (51.19%), Query Frame = 1
Query:   52 FLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLT-HARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR 552
            F+D    PD +++  L  L++ A     L+R    NF+P QLY D+Q T++  F  + + Q L  ++  YL++ G D LENLF  VR    H+ N   K+L +R ++A+ ++ +F + P L    +RL  +    LDH N   +     A+      V L + W +G+
Sbjct:   45 FMDAFVRPDWSLSQQLVSLSKFAHAAFALFRIHGVNFMPNQLYSDMQMTVKNAFFCIAKQQELDGSQPFYLFLLGDDRLENLFGRVRMQGGHSPNFSFKQLVDRLAAAMDLDAIFTRHPSLDPGFRRLKITRTEHLDHLNPESWRGDAVADQ-----VSLDNAWREGQ 207          
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Match: A0A6A4HXI8_9AGAR (Uncharacterized protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4HXI8_9AGAR)

HSP 1 Score: 90.1 bits (222), Expect = 1.210e-17
Identity = 46/151 (30.46%), Postives = 84/151 (55.63%), Query Frame = 1
Query:   28 VLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAVKTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLFATVRCLTHARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKGLLDHTNTRYF 480
            VL A+ + F+      + ++ + L+ LA    LL  LYR+  T+F+  QLYHD+ + I++ +  V + + L  T+ +Y++   +D +E+LF   R   H  N D   L +  + A    ++FE++P++K++S+RL+      +DH N  YF
Sbjct:  358 VLGALFDAFIQPFMQQEWSLYEQLKSLAIAGHLLFGLYRSHTTSFMSNQLYHDMHSVIKSIYFCVAKQKLLDNTKDIYIFQNASDRIESLFRETRTRDHNTNPDVLGLSQNVAMATDRAKIFERRPNMKQSSRRLSYDGSEGIDHVNPGYF 508          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4948.12915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2E6_9PHAE7.380e-4772.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A074RND4_9AGAM5.190e-2333.14Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A066V8D5_9AGAM1.370e-2132.61Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A066VD41_9AGAM1.570e-2133.14Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A0K6GBF2_9AGAM5.590e-2134.83Uncharacterized protein n=1 Tax=Rhizoctonia solani... [more]
A0A066W3Y0_9AGAM1.390e-2032.22Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A6H5KA62_9PHAE2.230e-1971.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A066V2E9_9AGAM7.490e-1933.15Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
UPI00046236794.550e-1830.95uncharacterized protein n=1 Tax=Trametes versicolo... [more]
A0A6A4HXI8_9AGAR1.210e-1730.46Uncharacterized protein n=1 Tax=Gymnopus androsace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4948contigL-elsbetiae_contig4948:8652..9203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue5e-27
Seed eggNOG ortholog2880.D7G3X4
Hectar predicted targeting categorysignal peptide
EggNOG OGs2DMFT@1,2S64X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816493.8021362-CDS-L-elsbetiae_contig4948:8651..92031622816493.8021362-CDS-L-elsbetiae_contig4948:8651..9203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 8652..9203 +
1691683599.8530393-CDS-L-elsbetiae_contig4948:8651..92031691683599.8530393-CDS-L-elsbetiae_contig4948:8651..9203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4948 8652..9203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4948.12915.1prot_L-elsbetiae_contig4948.12915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4948 8652..9203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4948.12915.1

>prot_L-elsbetiae_contig4948.12915.1 ID=prot_L-elsbetiae_contig4948.12915.1|Name=mRNA_L-elsbetiae_contig4948.12915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
NALLSFISQVLAAIIEPFLDVLQNPDKTITDLLRGLARVAFLLLFLYRAV
KTNFVPGQLYHDLQATIRAKFHLVGEAQRLCPTEKLYLWMAGTDGLENLF
ATVRCLTHARNVDAKELGERFSSAIGVEQVFEKKPHLKRTSKRLNGSEKG
LLDHTNTRYFDDHGPANNTDVRDVDLASCWFDGR
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mRNA from alignment at L-elsbetiae_contig4948:8652..9203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4948.12915.1 ID=mRNA_L-elsbetiae_contig4948.12915.1|Name=mRNA_L-elsbetiae_contig4948.12915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig4948:8652..9203+ (Laminarionema elsbetiae ELsaHSoW15)
AACGCATTATTATCGTTTATTTCCCAGGTTCTCGCGGCAATCATCGAGCC CTTTCTGGATGTGCTTCAAAACCCCGACAAGACCATCACCGACCTTCTAC GAGGGCTGGCCCGCGTCGCCTTCCTGCTCCTGTTCTTGTATAGGGCGGTG AAGACGAACTTCGTACCGGGGCAGCTCTATCATGACCTCCAGGCGACCAT TAGAGCTAAGTTTCATCTAGTGGGCGAAGCGCAGCGTCTGTGTCCGACAG AAAAGCTGTACCTGTGGATGGCTGGCACCGATGGACTTGAAAACCTGTTC GCTACGGTACGCTGCTTGACTCATGCCCGGAACGTCGACGCCAAGGAGCT GGGTGAGCGATTCAGTAGTGCAATCGGGGTCGAGCAGGTGTTCGAGAAGA AGCCGCACTTGAAGAGAACTTCCAAGCGCCTCAATGGCTCTGAGAAAGGG CTCCTCGACCACACCAACACCCGCTACTTCGACGACCATGGCCCAGCGAA CAACACAGACGTTCGAGATGTGGACTTGGCTTCATGCTGGTTCGACGGGC GG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4948:8652..9203+

>mRNA_L-elsbetiae_contig4948.12915.1 ID=mRNA_L-elsbetiae_contig4948.12915.1|Name=mRNA_L-elsbetiae_contig4948.12915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig4948:8652..9203+ (Laminarionema elsbetiae ELsaHSoW15)
AACGCATTATTATCGTTTATTTCCCAGGTTCTCGCGGCAATCATCGAGCC
CTTTCTGGATGTGCTTCAAAACCCCGACAAGACCATCACCGACCTTCTAC
GAGGGCTGGCCCGCGTCGCCTTCCTGCTCCTGTTCTTGTATAGGGCGGTG
AAGACGAACTTCGTACCGGGGCAGCTCTATCATGACCTCCAGGCGACCAT
TAGAGCTAAGTTTCATCTAGTGGGCGAAGCGCAGCGTCTGTGTCCGACAG
AAAAGCTGTACCTGTGGATGGCTGGCACCGATGGACTTGAAAACCTGTTC
GCTACGGTACGCTGCTTGACTCATGCCCGGAACGTCGACGCCAAGGAGCT
GGGTGAGCGATTCAGTAGTGCAATCGGGGTCGAGCAGGTGTTCGAGAAGA
AGCCGCACTTGAAGAGAACTTCCAAGCGCCTCAATGGCTCTGAGAAAGGG
CTCCTCGACCACACCAACACCCGCTACTTCGACGACCATGGCCCAGCGAA
CAACACAGACGTTCGAGATGTGGACTTGGCTTCATGCTGGTTCGACGGGC
GGAACGCATTATTATCGTTTATTTCCCAGGTTCTCGCGGCAATCATCGAG
CCCTTTCTGGATGTGCTTCAAAACCCCGACAAGACCATCACCGACCTTCT
ACGAGGGCTGGCCCGCGTCGCCTTCCTGCTCCTGTTCTTGTATAGGGCGG
TGAAGACGAACTTCGTACCGGGGCAGCTCTATCATGACCTCCAGGCGACC
ATTAGAGCTAAGTTTCATCTAGTGGGCGAAGCGCAGCGTCTGTGTCCGAC
AGAAAAGCTGTACCTGTGGATGGCTGGCACCGATGGACTTGAAAACCTGT
TCGCTACGGTACGCTGCTTGACTCATGCCCGGAACGTCGACGCCAAGGAG
CTGGGTGAGCGATTCAGTAGTGCAATCGGGGTCGAGCAGGTGTTCGAGAA
GAAGCCGCACTTGAAGAGAACTTCCAAGCGCCTCAATGGCTCTGAGAAAG
GGCTCCTCGACCACACCAACACCCGCTACTTCGACGACCATGGCCCAGCG
AACAACACAGACGTTCGAGATGTGGACTTGGCTTCATGCTGGTTCGACGG
GCGG
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