mRNA_L-elsbetiae_contig4947.12913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4947.12913.1
Unique NamemRNA_L-elsbetiae_contig4947.12913.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: D7FX77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX77_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 1.520e-84
Identity = 142/242 (58.68%), Postives = 164/242 (67.77%), Query Frame = 1 
Query:  394 PTEAPTTFGDGSSEYPNCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPADCGVTPSPAASSGFPDCDGSMAYFQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAPDDCGTDSPG-----------CEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDSSY-ECGVVGFNCLDPISTCSGTS 1083
            PT AP+   DGS EY  C GY +HIKDG+CD+DLN A CGWDGGDCCACTCG   +S +EL HPCGQLGDGYDC DPDVP DCGVTPSPAA+ G+PDC+  +  +Q+  CD +LN AECG+DGGDCCRCTCR+Y           Y  CG +GYDC DP+AP  C TDSP            CEG+I+ IGDG CD   NNEEC WD GDCCSC CE SSY  C     +C DP + C+  S
Sbjct:   53 PTPAPS---DGSPEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCGS--DSDEELAHPCGQLGDGYDCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAECGYDGGDCCRCTCRDYNSWGY------YTNCGYYGYDCMDPDAPSSCSTDSPTPSPAAGTDWPECEGYIYMIGDGSCDYYNNNEECDWDGGDCCSCTCEGSSYYSCSSYSMDCQDPNANCTTPS 283
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: A0A6H5J6K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6K0_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 3.420e-84
Identity = 141/243 (58.02%), Postives = 165/243 (67.90%), Query Frame = 1 
Query:  391 SPTEAPTTFGDGSSEYPNCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPADCGVTPSPAASSGFPDCDGSMAYFQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAPDDCGTDSPG-----------CEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDSSY-ECGVVGFNCLDPISTCSGTS 1083
            +PT AP+   DGSSEY  C GY +HIKDG+CD+DLN A CGWDGGDCCACTCG   +S +EL HPCGQLGDGY+C DPDVP DCGVTPSPAA+ G+PDC+  +  +Q+  CD +LN A CG+DGGDCCRCTCR+Y           Y  CG +GYDC DP+AP  C TDSP            CEG+I+ IGDG CD   NNEECGWD GDCCSC CE S Y  C     +C DP + C+  S
Sbjct:   52 TPTPAPS---DGSSEYLGCLGYTNHIKDGYCDTDLNNAECGWDGGDCCACTCG--ADSDEELAHPCGQLGDGYNCLDPDVPDDCGVTPSPAAAIGYPDCEEYLYEWQDGVCDDNLNTAACGYDGGDCCRCTCRDYSSWG-------YSTCGYYGYDCMDPDAPSACSTDSPTPSPAAGTDWPECEGYIYMIGDGSCDYYNNNEECGWDGGDCCSCTCEGSYYYSCSSYSMDCQDPNANCTTPS 282
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: A0A6H5JVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 3.390e-73
Identity = 127/244 (52.05%), Postives = 149/244 (61.07%), Query Frame = 1 
Query:  397 TEAPTTFGDGSSEYPNCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPADCGVTPSPAASSGFPDCDGSMAY-FQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAPDDCGTDSPG-----------CEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDSSYECGVVGFNCLDP-IST-CSGTSS 1086
            T  PT+       YP C GY  HI DG+CD D N A+CG+DGGDCCACTCG   E    + H CG L DGYDC+DPDVP DC +       + F  C+G   Y +Q+ YCD DLN AECG+DGGDCCRCTCR+Y           Y +CG +GYDC DPEAP  C TDSP            CEG++F+IGDG CD   NNEEC WD GDCC+C C    Y CG   F+C DP +ST CS TS+
Sbjct:  146 TAGPTSLDASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGMDAE----VDHECGLLNDGYDCRDPDVPEDCNL-------ANFAQCEGMNGYDWQDGYCDDDLNTAECGYDGGDCCRCTCRDYDSWGY------YSSCGYYGYDCLDPEAPSSCSTDSPTPSPAAGTDWPECEGYLFEIGDGHCDYYNNNEECDWDGGDCCACTCVSGYYTCGYYTFDCEDPSVSTDCSTTST 372
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BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: D7FX76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX76_ECTSI)

HSP 1 Score: 194 bits (492), Expect = 3.960e-53
Identity = 96/194 (49.48%), Postives = 117/194 (60.31%), Query Frame = 1 
Query:  397 TEAPTTFGDGSSEYPNCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPADCGVTPSPAASSGFPDCDGSMAY-FQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAPDDCGTDSPG-----------CEGFIFDIGDGW 942
            T  PT+       YP C GY  HI DG+CD D N A+CG+DGGDCCACTCG   +    + H CG LGDGYDC+DPDVP DC +       + F  C+    Y +Q+ YCD DLN  ECG+DGGDCCRCTCR+Y           Y++CG +GYDC DPEAP  C TDSP            CEG+++ IGDG+
Sbjct:  144 TAGPTSLDASDDPYPGCGGYIPHIGDGYCDEDNNTAACGFDGGDCCACTCGVDAD----VEHECGLLGDGYDCRDPDVPDDCNL-------ANFAQCEDMNGYDWQDGYCDDDLNTPECGYDGGDCCRCTCRDYNSWGY------YNSCGYYGYDCMDPEAPSSCSTDSPTPSPAAGTDWPECEGYLYAIGDGF 320
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 2.360e-33
Identity = 86/216 (39.81%), Postives = 109/216 (50.46%), Query Frame = 1 
Query:  445 CPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPA--DCGVTPSPAASSGFPDCDGSMAYFQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAP----DDCGTDSPG-CEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDSSYECGVVGFNCLDPISTC 1071
            C G   H+ DG CD   N   CG+DGGDCC CTC       D+  + CG  G  + C DP      D  VT     + G       +    +  CD D N  EC +DGGDCC CTC+              ++     + C DP+AP    DD   D    C G   + GDGWCD   NN+ECG+D+GDCCSC C D +YECG+VGF+C+DP + C
Sbjct:  177 CGGNIVHLADGDCDQINNNEECGYDGGDCCFCTC------LDDF-YECGIRG--FACIDPSAECADDDDVTVDTVENCG-------VRSIGDGQCDLDNNREECHYDGGDCCSCTCQVPDDDSGDDGSLCSESTV---FACIDPDAPCVNDDDITVDMMDTCGGHPINFGDGWCDDDNNNKECGYDSGDCCSCTCVDGTYECGIVGFDCVDPSAEC 373
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.940e-29
Identity = 83/225 (36.89%), Postives = 109/225 (48.44%), Query Frame = 1 
Query:  415 FGDGSSEYPNCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPADCGVTPSPAASSGFPDCDGSMAY---FQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAPDDCGT------DSPGCEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDS-SYECGVVGFNCLDP 1059
            F  G+++Y NC G  + I +G CD+ LN+ SCG+DGGDCC CTC +G        H C      +DC                    +PDC GS  +    ++ +CD   N+  C +DGGDCC C+C +               CG  G+ C DP    DCG       ++  CE    +  DG+CDSS N   C +D GDCC C C D   YECG  GF+CLDP
Sbjct:   19 FYGGTAQYANCNGTVTDIGNGQCDAVLNVPSCGYDGGDCCPCTCVDGPT------HSCSTSD--FDCM-------------------YPDCGGSECHEDWAKDGFCDLVNNHPSCDYDGGDCCECSCIDGPDY----------GCGSIGFACLDP----DCGNTTETAPENTTCEESWMN--DGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFSCLDP 200
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 5.960e-28
Identity = 83/207 (40.10%), Postives = 103/207 (49.76%), Query Frame = 1 
Query:  472 DGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVP--ADCGVTPSPAASSGFPDCDGSMAYFQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAP----DDCGTD-SPGCEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDSSYECGVVGFNCLDPISTC 1071
            DG+C    N A CG+DGGDCC CTC +  +  D     C + G G+ C DPD P  A+ GVT   +    F D         + +CD   NN  CG+DGGDCC CTC              Y ACG  G+ C DP AP    DD   D    C+     +GDG+CD   NN  C +D GDCC C CE ++   G  GF C+DP + C
Sbjct:   38 DGYCTPPNNNAECGYDGGDCCECTC-QNPQGGDHH-WICSKNGSGFACVDPDAPCYAEDGVTVEASQECDFWD-------LGDGWCDQVNNNELCGYDGGDCCECTCE--VPTDDDWDNDLYVACGE-GFACIDPSAPCVNDDDITVDVDESCD--AVGMGDGYCDMDNNNAACAYDGGDCCECTCEPNNKCGGRSGFACIDPGAPC 230
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 8.900e-27
Identity = 84/219 (38.36%), Postives = 108/219 (49.32%), Query Frame = 1 
Query:  442 NCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPA--DCGVTPSPAASSGFPDCDGSMAYFQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAP----DDCGTDS-PGCEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDS-SYECGV-VGFNCLDPISTC 1071
            NC  +     DG+CD + N   CG+DGGDCC CTC     +A +  + C        C DP  P   D  VT     + G+    GS+    N +CD + NN  CG+DGGDCC CTC+              + CG  G+ C DP AP    DD   D    C+     +G+G+CD   NNE C +D GDCC C CED  + ECG   GF C+DP + C
Sbjct:   55 NC--FPREFGDGWCDQENNNEICGYDGGDCCECTC----VNAWDDDYSCAA---NSACIDPSAPCVDDDDVTVDMVENCGYV---GSVG---NGWCDEENNNEGCGYDGGDCCECTCQPLDTDDGTDDYFQ-NGCGN-GFACIDPNAPCVNDDDITLDIVENCDSVA--VGNGFCDMDNNNEACAYDGGDCCECTCEDQPNQECGRWSGFACIDPEAPC 254
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.150e-26
Identity = 77/185 (41.62%), Postives = 90/185 (48.65%), Query Frame = 1 
Query:  472 DGFCDSDLNIASCGWDGGDCCACTCGEGLESADELPHPCGQLGDGYDCQDPDVPA--DCGVTPSPAASSGFPDCDGSMAYFQNSYCDYDLNNAECGWDGGDCCRCTCREYXXXXXXXXXXXYDACGGFGYDCRDPEAP----DDCGTDSPGCEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDC 1008
            DG+C    N A CG+DGGDCC CTC       DE    C + G G+ C DPD P   D  +T   A +    D         N YCD D NN  CG+D GDCC CTC              Y +  G G+ C DP AP    DD   D     G++  +GDGWCD   NNE CG+D GDCC C C
Sbjct:   31 DGYCQLQNNNAECGYDGGDCCECTCQNPWGDDDEWF--CSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSD-------LGNGYCDEDNNNEICGYDFGDCCECTC-----VSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENCGYVRGLGDGWCDDWNNNELCGYDGGDCCECTC 201
[Close]
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.550e-26
Identity = 91/227 (40.09%), Postives = 114/227 (50.22%), Query Frame = 1 
Query:  442 NCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESA-----DELPHPCGQLGDGYDCQDPDVPA--DCGVTPSPAASSGFPDCDGSMAYFQNSYCDYDLNNAECGWDGGDCCRCTC---REYXXXXXXXXXXXYDACGGFGYDCRDPEAPDDCGTDSPGCEGFI-----FDIGDGWCDSSTNNEECGWDAGDCCSCDCEDS-SYECGV-VGFNCLDPISTC 1071
            NC    S + DG+CD D N   CG+DGGDCC CTC    +       D+    C   G G+ C DP  P   D  +T     + G+      +    + +C  + NN  CG+DGGDCC CTC         XXXXXXXXY ACGG G+ C DP A   C  D     G +       IGDG+C+   NNE C +D GDCC C CED+ +  CG    F C+DP + C
Sbjct:   53 NCD--TSELGDGYCDQDNNNEICGYDGGDCCECTCVACKKHGQSPWDDDDDWLCSSGGSGFACIDPAAPCVEDDDITADMVENCGY------VRGLGDGWCHEENNNELCGYDGGDCCECTCVAPPADDDWXXXXXXXXYGACGG-GFACIDPSAA--CVDDDEVTVGMVESCDTVSIGDGYCNMDNNNEACAYDGGDCCECTCEDTPNNRCGRWSSFACIDPAAPC 268
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4947.12913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX77_ECTSI1.520e-8458.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6K0_9PHAE3.420e-8458.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVP4_9PHAE3.390e-7352.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX76_ECTSI3.960e-5349.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE2.360e-3339.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI1.940e-2936.89Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G4F9_ECTSI5.960e-2840.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI8.900e-2738.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI3.150e-2641.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE3.550e-2640.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4947contigL-elsbetiae_contig4947:4376..8809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.7
Seed ortholog evalue6.1e-77
Seed eggNOG ortholog2880.D7FX77
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E9KF@1,2SFXU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1622
Cds size1092
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4947.12913.1prot_L-elsbetiae_contig4947.12913.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4947 4639..7859 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816493.6041865-UTR-L-elsbetiae_contig4947:4375..46381622816493.6041865-UTR-L-elsbetiae_contig4947:4375..4638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4947 4376..4638 -
1691683599.677226-UTR-L-elsbetiae_contig4947:4375..46381691683599.677226-UTR-L-elsbetiae_contig4947:4375..4638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4947 4376..4638 -
1622816493.6791635-UTR-L-elsbetiae_contig4947:7859..79231622816493.6791635-UTR-L-elsbetiae_contig4947:7859..7923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4947 7860..7923 -
1691683599.768228-UTR-L-elsbetiae_contig4947:7859..79231691683599.768228-UTR-L-elsbetiae_contig4947:7859..7923Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4947 7860..7923 -
1622816493.6918495-UTR-L-elsbetiae_contig4947:8606..88091622816493.6918495-UTR-L-elsbetiae_contig4947:8606..8809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4947 8607..8809 -
1691683599.7807045-UTR-L-elsbetiae_contig4947:8606..88091691683599.7807045-UTR-L-elsbetiae_contig4947:8606..8809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4947 8607..8809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816493.6165524-CDS-L-elsbetiae_contig4947:4638..50121622816493.6165524-CDS-L-elsbetiae_contig4947:4638..5012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 4639..5012 -
1691683599.6995165-CDS-L-elsbetiae_contig4947:4638..50121691683599.6995165-CDS-L-elsbetiae_contig4947:4638..5012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 4639..5012 -
1622816493.6270747-CDS-L-elsbetiae_contig4947:5262..54591622816493.6270747-CDS-L-elsbetiae_contig4947:5262..5459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 5263..5459 -
1691683599.7158751-CDS-L-elsbetiae_contig4947:5262..54591691683599.7158751-CDS-L-elsbetiae_contig4947:5262..5459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 5263..5459 -
1622816493.6375833-CDS-L-elsbetiae_contig4947:5935..59601622816493.6375833-CDS-L-elsbetiae_contig4947:5935..5960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 5936..5960 -
1691683599.7286973-CDS-L-elsbetiae_contig4947:5935..59601691683599.7286973-CDS-L-elsbetiae_contig4947:5935..5960Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 5936..5960 -
1622816493.6501932-CDS-L-elsbetiae_contig4947:6747..69871622816493.6501932-CDS-L-elsbetiae_contig4947:6747..6987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 6748..6987 -
1691683599.7415044-CDS-L-elsbetiae_contig4947:6747..69871691683599.7415044-CDS-L-elsbetiae_contig4947:6747..6987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 6748..6987 -
1622816493.6680064-CDS-L-elsbetiae_contig4947:7603..78591622816493.6680064-CDS-L-elsbetiae_contig4947:7603..7859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 7604..7859 -
1691683599.7553363-CDS-L-elsbetiae_contig4947:7603..78591691683599.7553363-CDS-L-elsbetiae_contig4947:7603..7859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4947 7604..7859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4947.12913.1

>prot_L-elsbetiae_contig4947.12913.1 ID=prot_L-elsbetiae_contig4947.12913.1|Name=mRNA_L-elsbetiae_contig4947.12913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=364bp
MHVSYTQGRRLMLSAVVFCSMLLLPHDGGGVLAQRNRDGTFSPTEAPTTF
GDGSSEYPNCPGYASHIKDGFCDSDLNIASCGWDGGDCCACTCGEGLESA
DELPHPCGQLGDGYDCQDPDVPADCGVTPSPAASSGFPDCDGSMAYFQNS
YCDYDLNNAECGWDGGDCCRCTCREYHYDYGYDYTYRYDACGGFGYDCRD
PEAPDDCGTDSPGCEGFIFDIGDGWCDSSTNNEECGWDAGDCCSCDCEDS
SYECGVVGFNCLDPISTCSGTSSSYYGGYSSGYTTSGYTTSSSSYYFGND
DGAISGVYHDDDATSNSAGYYYSGRGVSSSIDPTTASVTSKGASVSNTVA
VIVLSVSVFILFG*
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mRNA from alignment at L-elsbetiae_contig4947:4376..8809-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4947.12913.1 ID=mRNA_L-elsbetiae_contig4947.12913.1|Name=mRNA_L-elsbetiae_contig4947.12913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4434bp|location=Sequence derived from alignment at L-elsbetiae_contig4947:4376..8809- (Laminarionema elsbetiae ELsaHSoW15)
ATCCAACATGGATCACGTTTCATTGCCGGGATATCCCTGGTCCACAGTCT
AGCTCTCCCAGGAAAATTCTGAATGCGTAGCTCCCCCGGGAAAATTCTCA
AATTCGAGAGTGATTTTGCCACACACACCGTTGTGGTTTCCGATGCTCCC
ACAAGCGGTTTAAGCCAACGGAGAGACCCGGCCCCTGTCACCATCTGAAT
CCGGTGAGAGGCTGTATCAAGCATGCTGCATCGATGGCTCCCTTCCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCT
CTCTTTTCTCTCTCTCTCTTTTCTCTCTTCCCTCTCTTCCCTCTTCCCTC
TTCCCCCTCTCTCTTCTCTACCAGCCCCGCGTGTATATTATTATTCTGAA
CCCTCCATATTGTGGACTATCCATATCTATCGAGTCTAGCTGAGCTCTAG
AGAGTTATTTTCGTGGAGAGCACATGTGATATGTGAGAGAGAGGCAATCC
CCTTTCCCTCTCTCCAGCCTTCAGTGGCGTTCGTTCTTGTTCGGTTACCG
ATTTGGAAACTTAATTTTCATTAGAAGCTAGATACTTATCTAGTCTAGTC
TAGATATGTAGATATGCCTAGACCATGCACGGCCACCCTGTAAAAATAGA
AAGCAGCGTCGCTCCGCGTGACACAAGCACACGATCGTTAGAACCCGGAC
TGTACCTCGGGCCCATTCGGGATAGCACACAACCTCTCTAGATAGACTAT
CATCGTGTTCACCTTTTTTCTGCGACAGCTAGGTAGATACACAACTCCGT
TCCCTTGGAAATGGCTTTTGTATTTTCGCTGTCTGTGATTCATGACCTGT
TCGTTCGTTCACACATTTACGGTGCTCGCCCTGCAGGCGACGCAACACAA
ACACAAAGCCCCGTGCTACGGTGCTGCTGTGCGAACAACGGGGAGCGCCC
ATGCACGTATCATACACCCAAGGCCGGCGGTTGATGTTGTCGGCTGTGGT
CTTCTGCTCTATGCTCCTTCTCCCACATGACGGAGGAGGTGTTCTCGCCC
AACGAAACCGTGACGGTACTTTCAGCCCGACGGAGGCTCCGACGACTTTT
GGAGATGGTTCGTCGGAGTACCCCAACTGTCCAGGCTACGCGAGCCACAT
CAAGGACGGATTCTGCGATAGTGACTTGAACATCGCTTCGTGCGGATGGG
ACGGAGGTACGCATCTATCCTACTTTTTTATGCCATTTATCTAGTCTAGA
CTGATAGATATATATACATGTAAGGAGTAGATCTATATCTAGATAGATAT
ATGTATAAACTACATAATCTTACATACATATATAGATCTGTATGTAGTCT
ACACCGTTCTTAGATATAGTCTACATCTATAGATAGTCTACGTCCGTTGC
TTTCGATTGATAAGAGGCAGTTGTCCATGTGTTGTGAAAATGCACTTCAG
GTGGTGGCACGCGTCCCTCTGCAACTTGTACCCGATGCCGAGTTCCGAAT
CGTGTGCACGCACCCCCCCCGTGTAGTTTTAATGTCTCCTCCTGCTGGAA
TCATTGGGAGAAGGAGAGATCCATCGATGTGCCTGTGAGTGGGACATCTA
CATACATAGATATGTGACCCCGGTTGGGTCGTATGGCCAGAGTAGAAGTG
GAGGATGGGGGCCAGAGGGGCAGACGACAAAATCCAATAATGGGCAGACA
AAAAAAATATATATATATATAGTCTAGATATATTGTACCTTTCAGAACCG
TTGTTTTGCCAACCAGACCCTTGTAATGCCGGCGGATTGTGGTTCGCTTC
CTGCCTCAATTGGACAAACCAGGGGACTGCTGCGCCTGCACGTGTGGCGA
AGGGCTAGAAAGCGCCGATGAGCTTCCTCACCCCTGCGGGCAGTTGGGGG
ACGGATATGACTGCCAGGACCCGGACGTGCCTGCCGACTGCGGGGTGACG
CCCAGCCCGGCCGCCTCCTCCGGCTTCCCCGACTGCGACGGATCAATGGC
CTACTTCCAGAACTCGTACTGCGATTACGACCTGAACAACGCCGAATGCG
GATGGGACGGGGGTATGTGCGTGGGGTTGTTGCTGCTGTTTCTGTTCCTA
ACAGTAGATCAGCGTCCGTGAGAGCCGTGGTCACAAAGCAGGGTTTGGGT
ATGTAGAATTAAGGAGGTTGTGAACATAGATTACATCTATATCTAGTCTA
GATATAGTCTAGACTAGATAGATACATAGTCTATACAGTCTATCTAGATG
CTCAGCCTGTATGCGACCTACTACTCATCGGCGCATGCATCAGTCTTCGA
TTGCCACCCGGTGCCATATTATCATGCGTGCACGCACACTTTACAGATTT
TCGTTGCCCCTTCCCGAGACGAGTGTCCGGGGTTGCAGGTCTGCGTTGAT
AGACTAGCTAGGGATCTTGGCGAGGAGAAAATGAAATTTTCTACTGCCTT
GCACCCGATGCCGAATTGTGACTTGTGCGCGGCCGGCGATCTTGTTGGTA
GTGCCACCACATAACGATCCGCCTTACGATTCCGCACTACGTCAAGCTTC
GGGGCTCATGGTTTTTCCTTGGTTCTGATTTAGATAGATCTACACCATAA
AGCGAAGGTGTTCTTGGTGAAGGCACCACACTATTATTATTGCTGATATA
TTTCGCGCGTGCTTCGTTTGTAGAGCAATCAATGTCTTCTACGTTCCTAC
TTACCCATCCATGGTCGTCTTTGCATCTCGCTTTCGCCGGAAACTTCAAA
CACTATCATCCATTTGTTCACGGGTATGTTCTCCCTGCCCCATCGTGCTT
GTCCGTCTTCCGCGTCTTTTGGAATTCTCAACGTGATTGAACCCCTCAGG
CGATTGCTGCCGCTGCACGTGCCGGTGAGGGAGCTGGGTGAAGCCTGATG
TTAATAATGTTGATAGCAAGACCAGTGTGTTACGTACAGCTGGGCCCCTC
TGCAGCATTGTTGCACCTTATGCGTGCCGCTTCTCGCGCAATGAGTGGTT
CGGCGGTGTGCGCAGTTGGGTGGAGAGATCGGCGAGAGAAGGGGGAGAGT
GCGATATAATTTGATTTTCAGGCCAGAGCTATGTACTACTGTTGAGGTCG
TCAATTGTCGGGATCGTCCGTTGTGCGTTTCTCTAAAACAATATATATGT
CAGGTTATAAGGCGTTTTCTTTCGCGTGTTGGTACAAGTACGGATATGTT
ATGTGTGTATATTGAAGGAATCTGCAATTGTCGGATGGCAAACGAAGTAA
TAATAATATTGGTTGGATACATCTGCAATTGTCGGATGGCAAATAAAATA
ATATTAGTCTTAAACTTCTTATTTGCGCTGTCTCGTTTTGTTTCCTGCAG
GGAATACCACTACGACTACGGCTACGACTACACCTACAGGTATGACGCTT
GCGGCGGCTTTGGCTACGATTGCCGGGATCCCGAGGCTCCGGACGACTGT
GGCACAGACAGCCCGGGATGTGAAGGATTTATCTTCGACATTGGCGATGG
TTGGTGCGATTCTTCAACCAACAACGAGGAATGTGGATGGGATGCAGGTA
AGAGTCGTTGCGATGTTCAACATATGACTAGATGCGTACGTACCTGGCAT
TCTGGTGAGTTTTCCCGGGCTGAGTGCTTCATCAACCAGGCTTGCGGGTG
GGGCGGGCGTGAGAGTGTGGCTACGCATACCAGTTTAAAGCTCCGGTCTT
CAATTCGCTGCTTGCGCTTCTCTGGCTTTCTCCTCTGTTCTCCCCACTCG
CTCGCTCGCTCGCTCGCTCGCTCTCCGACTCCATGGCCTCACCGCAGGCG
ATTGCTGTTCCTGTGACTGCGAGGACTCGTCATACGAATGCGGGGTGGTC
GGTTTCAACTGCCTGGACCCGATTTCCACGTGCTCCGGAACGAGCAGTAG
TTATTACGGTGGTTATAGCAGCGGTTACACCACCAGTGGCTACACCACCA
GTAGTTCTTCATACTATTTTGGCAACGACGATGGAGCGATTTCCGGTGTT
TATCATGACGATGACGCGACCTCCAACAGCGCCGGCTACTACTACAGCGG
TCGCGGCGTCTCCAGTTCTATAGACCCAACAACAGCCAGCGTGACCTCAA
AAGGCGCGTCGGTGTCCAACACGGTGGCCGTCATCGTCCTGTCCGTGTCG
GTTTTCATCCTCTTCGGGTGAGCCGCCCTGGCCGCGCTTGGCTTCCAACG
ACACCGCCGGTGGGGCCACGTTGACGACCAGGGCGCCGGCCATGTCGAGG
CTGGTGTTGTCAGCGTGAAGGAGGGCAAAGGCGCAGAAGAGCCAGAGCTC
GAGAAGATCCTCTACGGTACCGGTGGTACGGGAGTCAGTCAAACCAGGAA
CACGGACGGAGGGGACGTTGGCAAGGCGGAAAGGGGGGGAAAAGCGGTGG
CCGGGACTGGCAATGGCGCTAGCGTTGCAGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4947:4376..8809-

>mRNA_L-elsbetiae_contig4947.12913.1 ID=mRNA_L-elsbetiae_contig4947.12913.1|Name=mRNA_L-elsbetiae_contig4947.12913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2184bp|location=Sequence derived from alignment at L-elsbetiae_contig4947:4376..8809- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGTATCATACACCCAAGGCCGGCGGTTGATGTTGTCGGCTGTGGT
CTTCTGCTCTATGCTCCTTCTCCCACATGACGGAGGAGGTGTTCTCGCCC
AACGAAACCGTGACGGTACTTTCAGCCCGACGGAGGCTCCGACGACTTTT
GGAGATGGTTCGTCGGAGTACCCCAACTGTCCAGGCTACGCGAGCCACAT
CAAGGACGGATTCTGCGATAGTGACTTGAACATCGCTTCGTGCGGATGGG
ACGGAGATGCACGTATCATACACCCAAGGCCGGCGGTTGATGTTGTCGGC
TGTGGTCTTCTGCTCTATGCTCCTTCTCCCACATGACGGAGGAGGTGTTC
TCGCCCAACGAAACCGTGACGGTACTTTCAGCCCGACGGAGGCTCCGACG
ACTTTTGGAGATGGTTCGTCGGAGTACCCCAACTGTCCAGGCTACGCGAG
CCACATCAAGGACGGATTCTGCGATAGTGACTTGAACATCGCTTCGTGCG
GATGGGACGGAGGGGACTGCTGCGCCTGCACGTGTGGCGAAGGGCTAGAA
AGCGCCGATGAGCTTCCTCACCCCTGCGGGCAGTTGGGGGACGGATATGA
CTGCCAGGACCCGGACGTGCCTGCCGACTGCGGGGTGACGCCCAGCCCGG
CCGCCTCCTCCGGCTTCCCCGACTGCGACGGATCAATGGCCTACTTCCAG
AACTCGTACTGCGATTACGACCTGAACAACGCCGAATGCGGATGGGACGG
GGGGGACTGCTGCGCCTGCACGTGTGGCGAAGGGCTAGAAAGCGCCGATG
AGCTTCCTCACCCCTGCGGGCAGTTGGGGGACGGATATGACTGCCAGGAC
CCGGACGTGCCTGCCGACTGCGGGGTGACGCCCAGCCCGGCCGCCTCCTC
CGGCTTCCCCGACTGCGACGGATCAATGGCCTACTTCCAGAACTCGTACT
GCGATTACGACCTGAACAACGCCGAATGCGGATGGGACGGGGGCGATTGC
TGCCGCTGCACGTGCCGGCGATTGCTGCCGCTGCACGTGCCGGGAATACC
ACTACGACTACGGCTACGACTACACCTACAGGTATGACGCTTGCGGCGGC
TTTGGCTACGATTGCCGGGATCCCGAGGCTCCGGACGACTGTGGCACAGA
CAGCCCGGGATGTGAAGGATTTATCTTCGACATTGGCGATGGTTGGTGCG
ATTCTTCAACCAACAACGAGGAATGTGGATGGGATGCAGGGAATACCACT
ACGACTACGGCTACGACTACACCTACAGGTATGACGCTTGCGGCGGCTTT
GGCTACGATTGCCGGGATCCCGAGGCTCCGGACGACTGTGGCACAGACAG
CCCGGGATGTGAAGGATTTATCTTCGACATTGGCGATGGTTGGTGCGATT
CTTCAACCAACAACGAGGAATGTGGATGGGATGCAGGCGATTGCTGTTCC
TGTGACTGCGAGGACTCGTCATACGAATGCGGGGTGGTCGGTTTCAACTG
CCTGGACCCGATTTCCACGTGCTCCGGAACGAGCAGTAGTTATTACGGTG
GTTATAGCAGCGGTTACACCACCAGTGGCTACACCACCAGTAGTTCTTCA
TACTATTTTGGCAACGACGATGGAGCGATTTCCGGTGTTTATCATGACGA
TGACGCGACCTCCAACAGCGCCGGCTACTACTACAGCGGTCGCGGCGTCT
CCAGTTCTATAGACCCAACAACAGCCAGCGTGACCTCAAAAGGCGCGTCG
GTGTCCAACACGGTGGCCGTCATCGTCCTGTCCGTGTCGGTTTTCATCCT
CTTCGGGTGAGCGATTGCTGTTCCTGTGACTGCGAGGACTCGTCATACGA
ATGCGGGGTGGTCGGTTTCAACTGCCTGGACCCGATTTCCACGTGCTCCG
GAACGAGCAGTAGTTATTACGGTGGTTATAGCAGCGGTTACACCACCAGT
GGCTACACCACCAGTAGTTCTTCATACTATTTTGGCAACGACGATGGAGC
GATTTCCGGTGTTTATCATGACGATGACGCGACCTCCAACAGCGCCGGCT
ACTACTACAGCGGTCGCGGCGTCTCCAGTTCTATAGACCCAACAACAGCC
AGCGTGACCTCAAAAGGCGCGTCGGTGTCCAACACGGTGGCCGTCATCGT
CCTGTCCGTGTCGGTTTTCATCCTCTTCGGGTGA
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