mRNA_L-elsbetiae_contig4944.12907.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4944.12907.1
Unique NamemRNA_L-elsbetiae_contig4944.12907.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: D7G1F0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F0_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 8.670e-37
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   19 VESDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
            VESDDDLPFAC+ICRQGF DP+VTNCGHYFCE+CAQE YKTNPRCAACGKQTQGVFN AKKLTEKL
Sbjct:  284 VESDDDLPFACLICRQGFVDPIVTNCGHYFCERCAQEHYKTNPRCAACGKQTQGVFNAAKKLTEKL 349
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A836CP80_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP80_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.920e-26
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   19 VESDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
            V+ D DLPFAC ICR+ FRDPVVTNCGH+FCE CA + YK + RCAACGKQT GVFN A++L E +
Sbjct:  262 VDEDGDLPFACFICREAFRDPVVTNCGHHFCEACAMDNYKRSTRCAACGKQTGGVFNFARRLVEHM 327
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A6V1N7Z0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N7Z0_HETAK)

HSP 1 Score: 105 bits (261), Expect = 1.420e-25
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:   19 VESDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
            ++SDD+LPFAC ICR+ F  PV T CGHYFCE+CA E YKT+ RCA CGKQT G+FN AKK+ E++
Sbjct:  213 IDSDDELPFACHICREDFEQPVATLCGHYFCEECALEHYKTDKRCAICGKQTSGIFNQAKKIVERM 278
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A8H7RE19_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7RE19_9FUNG)

HSP 1 Score: 104 bits (259), Expect = 2.240e-25
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   22 ESDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
            +SDD+LPFAC+ICR+ F++PVVT C HYFCE CA + YK +P+C ACGK TQGVFN AKK+ EKL
Sbjct:  218 DSDDELPFACLICREEFKNPVVTRCEHYFCEACAIKNYKKSPKCYACGKPTQGVFNTAKKMLEKL 282
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A0B7MVZ9_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7MVZ9_9FUNG)

HSP 1 Score: 100 bits (250), Expect = 5.920e-24
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   25 SDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
             DD+LPFAC+ICRQ F DPVVT CGHYFCE CA + Y+ +P+C ACG  TQGVFN AKK+  KL
Sbjct:  234 DDDELPFACLICRQEFTDPVVTRCGHYFCETCAIKNYQKSPKCFACGAPTQGVFNTAKKMLAKL 297
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A8H7R028_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7R028_9FUNG)

HSP 1 Score: 100 bits (250), Expect = 6.620e-24
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   25 SDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
             DD+LPFAC+ICRQ F DPVVT CGHYFCE CA + Y+ +P+C ACG  TQGVFN AKK+  KL
Sbjct:  241 DDDELPFACLICRQEFTDPVVTRCGHYFCETCAIKNYQKSPKCFACGAPTQGVFNTAKKMLAKL 304
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A2N3NEU2_9PEZI (Pre-mRNA-splicing factor CWC24 (Fragment) n=1 Tax=Lomentospora prolificans TaxID=41688 RepID=A0A2N3NEU2_9PEZI)

HSP 1 Score: 100 bits (248), Expect = 1.120e-23
Identity = 41/58 (70.69%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:   31 DDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKL 204
            DD+PFACVIC+Q ++ PVVT CGHYFCE CA ++Y+TNP CAACG  T GVFNVA+KL
Sbjct:  268 DDIPFACVICKQPYKSPVVTRCGHYFCESCALKRYRTNPNCAACGASTGGVFNVARKL 325
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BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A1C7NCT8_9FUNG (Pre-mRNA-splicing factor CWC24 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NCT8_9FUNG)

HSP 1 Score: 99.4 bits (246), Expect = 1.930e-23
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   25 SDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
            SD++LPFAC+ICR+ F +PVVT C HYFCE CA + YK +P+C ACG  TQGVFN AKKL EKL
Sbjct:  224 SDEELPFACLICREEFTNPVVTRCEHYFCEACAIKNYKKSPKCFACGAPTQGVFNTAKKLLEKL 287
[Close]
BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A367KLW3_RHIST (Pre-mRNA-splicing factor CWC24 n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KLW3_RHIST)

HSP 1 Score: 99.0 bits (245), Expect = 2.780e-23
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   22 ESDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
            +SD++LPFAC+ICR+ F +PVVT C HYFCE CA   YK +P+C ACG  TQGVFN AKK+ EKL
Sbjct:  222 DSDEELPFACLICREEFVNPVVTRCNHYFCEACAIRNYKESPKCFACGAPTQGVFNTAKKILEKL 286
[Close]
BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Match: A0A397U223_9GLOM (Pre-mRNA-splicing factor CWC24 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U223_9GLOM)

HSP 1 Score: 99.0 bits (245), Expect = 3.030e-23
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:   22 ESDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPRCAACGKQTQGVFNVAKKLTEKL 216
            ESDD+LPFAC+ICRQ +++PVVT CGHYFCE+CA + +  +P+C ACG  T G+FN AK + +KL
Sbjct:  231 ESDDELPFACLICRQEYKNPVVTKCGHYFCEKCALQNFSKSPKCYACGAPTNGIFNTAKNILQKL 295
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4944.12907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F0_ECTSI8.670e-3790.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CP80_9STRA6.920e-2668.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1N7Z0_HETAK1.420e-2565.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8H7RE19_9FUNG2.240e-2567.69Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor satur... [more]
A0A0B7MVZ9_9FUNG5.920e-2467.19Pre-mRNA-splicing factor CWC24 n=1 Tax=Parasitella... [more]
A0A8H7R028_9FUNG6.620e-2467.19Pre-mRNA-splicing factor CWC24 n=1 Tax=Mucor plumb... [more]
A0A2N3NEU2_9PEZI1.120e-2370.69Pre-mRNA-splicing factor CWC24 (Fragment) n=1 Tax=... [more]
A0A1C7NCT8_9FUNG1.930e-2367.19Pre-mRNA-splicing factor CWC24 n=1 Tax=Choanephora... [more]
A0A367KLW3_RHIST2.780e-2364.62Pre-mRNA-splicing factor CWC24 n=1 Tax=Rhizopus st... [more]
A0A397U223_9GLOM3.030e-2360.00Pre-mRNA-splicing factor CWC24 n=2 Tax=Gigaspora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4944contigL-elsbetiae_contig4944:366..1280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue7.1e-30
Seed eggNOG ortholog2880.D7G1F0
Preferred nameRNF113A
KEGG koko:K03661,ko:K13127,ko:K15696
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0016020,GO:0016070,GO:0016071,GO:0016074,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0022008,GO:0030154,GO:0030182,GO:0031323,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1990904
EggNOG free text desc.snoRNA splicing
EggNOG OGsCOG5152@1,KOG1813@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Exons2
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816493.1799693-CDS-L-elsbetiae_contig4944:365..5361622816493.1799693-CDS-L-elsbetiae_contig4944:365..536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 366..536 +
1691683599.361917-CDS-L-elsbetiae_contig4944:365..5361691683599.361917-CDS-L-elsbetiae_contig4944:365..536Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 366..536 +
1622816493.194747-CDS-L-elsbetiae_contig4944:1235..12801622816493.194747-CDS-L-elsbetiae_contig4944:1235..1280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 1236..1280 +
1691683599.3789837-CDS-L-elsbetiae_contig4944:1235..12801691683599.3789837-CDS-L-elsbetiae_contig4944:1235..1280Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4944 1236..1280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4944.12907.1prot_L-elsbetiae_contig4944.12907.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4944 366..1280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4944.12907.1

>prot_L-elsbetiae_contig4944.12907.1 ID=prot_L-elsbetiae_contig4944.12907.1|Name=mRNA_L-elsbetiae_contig4944.12907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
GPVLRQVESDDDLPFACVICRQGFRDPVVTNCGHYFCEQCAQEQYKTNPR
CAACGKQTQGVFNVAKKLTEKL
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mRNA from alignment at L-elsbetiae_contig4944:366..1280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4944.12907.1 ID=mRNA_L-elsbetiae_contig4944.12907.1|Name=mRNA_L-elsbetiae_contig4944.12907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=915bp|location=Sequence derived from alignment at L-elsbetiae_contig4944:366..1280+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCCGTGTTGAGACAGGTGGAGAGCGACGACGATCTCCCGTTCGCTTG
CGTCATCTGCCGGCAGGGGTTCCGCGACCCGGTCGTGACCAACTGTGGGC
ACTACTTCTGCGAGCAATGCGCCCAGGAGCAGTACAAGACCAACCCGCGC
TGCGCCGCGTGCGGGAAGCAGGTGGGGCGCGCGCGGCATTCCAGCCGGAT
AGGGCTCATTTTTGTACGCGATCGGGCTGTTCTTGCCGGTATATGTAAAA
GCATTTGTTGTTGTTGTCAGTCCCCAGGCGAAGCATGTCTGTATACTGTC
ACCAGGGTGGTTGTTGCATATTCGTGTCGTTGAAATACGTAGTTTTGCCG
CATCGGAGAAGGATGTGGCAGCGACAAGAAAGTTACCTGCCTGAGTTTGC
CGTGTCTTTTCTCGTTTTTTGTAAAATATTTCTATGTATATTTATTCACG
TGTAGCGCGTCTTACTTTGGTCCGGTGGTGCCCAGCCTTGTACGGCGTGT
CCTGGGTCTTATGTATATCCCGACCCTCGATCTGCGACAGCGGGGGGGGA
CCGTCGCCGCCGCATCGCGCTGACCTTTCAAAGCGTTGGGAGACGCCTTA
ATGTACGGAGAAAAACCCTCGAAACCGCTTTGGCAGCGGCGGAGGGATAC
TAGTTTGGTGCGGGGGCCGATAACAGCTTGTATCTACACCTAAATACCCC
GTATCTGCGTACGCACATGGAACCCGGACTTCGCGCCCAAATCTGGGAAA
CCTCAAAGGTAGTCGCAGCTTCATCGGGTCGGGACAGCGACGTGTCTGCG
CTGCTCGACAAGCCTGACCATCGCGCACTGACCCACGCCTGTGACGATTT
CTATCCCCCCCCCCCTGCAGACCCAGGGGGTGTTTAACGTGGCCAAGAAG
CTTACGGAGAAGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4944:366..1280+

>mRNA_L-elsbetiae_contig4944.12907.1 ID=mRNA_L-elsbetiae_contig4944.12907.1|Name=mRNA_L-elsbetiae_contig4944.12907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig4944:366..1280+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCCGTGTTGAGACAGGTGGAGAGCGACGACGATCTCCCGTTCGCTTG
CGTCATCTGCCGGCAGGGGTTCCGCGACCCGGTCGTGACCAACTGTGGGC
ACTACTTCTGCGAGCAATGCGCCCAGGAGCAGTACAAGACCAACCCGCGC
TGCGCCGCGTGCGGGAAGCAGGGCCCCGTGTTGAGACAGGTGGAGAGCGA
CGACGATCTCCCGTTCGCTTGCGTCATCTGCCGGCAGGGGTTCCGCGACC
CGGTCGTGACCAACTGTGGGCACTACTTCTGCGAGCAATGCGCCCAGGAG
CAGTACAAGACCAACCCGCGCTGCGCCGCGTGCGGGAAGCAGACCCAGGG
GGTGTTTAACGTGGCCAAGAAGCTTACGGAGAAGCTCACCCAGGGGGTGT
TTAACGTGGCCAAGAAGCTTACGGAGAAGCTC
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