mRNA_L-elsbetiae_contig4940.12904.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4940.12904.1
Unique NamemRNA_L-elsbetiae_contig4940.12904.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4940.12904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4940contigL-elsbetiae_contig4940:6914..12007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size860
Cds size690
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4940.12904.1prot_L-elsbetiae_contig4940.12904.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4940 7082..12007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816492.7498362-UTR-L-elsbetiae_contig4940:6913..70811622816492.7498362-UTR-L-elsbetiae_contig4940:6913..7081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4940 6914..7081 +
1691683599.0079324-UTR-L-elsbetiae_contig4940:6913..70811691683599.0079324-UTR-L-elsbetiae_contig4940:6913..7081Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4940 6914..7081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816492.7605681-CDS-L-elsbetiae_contig4940:7081..76271622816492.7605681-CDS-L-elsbetiae_contig4940:7081..7627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4940 7082..7627 +
1691683599.0183206-CDS-L-elsbetiae_contig4940:7081..76271691683599.0183206-CDS-L-elsbetiae_contig4940:7081..7627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4940 7082..7627 +
1622816492.7716045-CDS-L-elsbetiae_contig4940:11863..120071622816492.7716045-CDS-L-elsbetiae_contig4940:11863..12007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4940 11864..12007 +
1691683599.031305-CDS-L-elsbetiae_contig4940:11863..120071691683599.031305-CDS-L-elsbetiae_contig4940:11863..12007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4940 11864..12007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4940.12904.1

>prot_L-elsbetiae_contig4940.12904.1 ID=prot_L-elsbetiae_contig4940.12904.1|Name=mRNA_L-elsbetiae_contig4940.12904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
MPVAVHAPDHGSSPRWAPPGSHSSALRVSREKFKLSLPSGAFRHPTNLAG
SAAPPPAVAAPAAPAQAATPPHLWIAPANKRKRSSPGRGEPTRVPPQSPV
RPVEWWRRPPSPLLVHMRPLWQSASSGGSNSGSDLSCVAKGACKAAGIAA
ARRRARGRASPPLSGEEAAAGGGARLKHDIPRSKLSPITPGSSIFSQDST
FFTRQPTARPKSGGWSSSAINSAPPPPMMA
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mRNA from alignment at L-elsbetiae_contig4940:6914..12007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4940.12904.1 ID=mRNA_L-elsbetiae_contig4940.12904.1|Name=mRNA_L-elsbetiae_contig4940.12904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5094bp|location=Sequence derived from alignment at L-elsbetiae_contig4940:6914..12007+ (Laminarionema elsbetiae ELsaHSoW15)
CTCAACAGGCACGGCAGGCCACACACGGCCCACGCGAAAAACAGCTCAGC
ACCAGGAGAGGTAGCCGTAGAAGCCCAGGCATATCGTTGTGCGAGGAGGT
GGTAGAGAGAGGAGGGAGTTTGATCCCTTCCACCCCCTGCCTCTCGGCGA
AGACACAAAAAAGCCAAAATGCCGGTCGCGGTCCATGCTCCCGACCACGG
ATCTTCGCCTCGCTGGGCGCCACCGGGAAGCCACAGCTCCGCCCTCCGGG
TGTCACGGGAGAAGTTCAAGCTGTCTCTCCCTTCCGGCGCGTTCAGGCAC
CCGACGAACCTTGCGGGCAGCGCCGCGCCGCCGCCTGCCGTCGCGGCACC
GGCAGCACCGGCACAGGCAGCAACGCCGCCGCACCTTTGGATCGCCCCAG
CGAACAAGCGGAAGCGGTCCTCGCCGGGGAGAGGAGAGCCCACGCGAGTA
CCGCCGCAGTCACCCGTGCGCCCGGTGGAGTGGTGGCGCCGGCCGCCGTC
GCCCCTCCTGGTGCACATGCGGCCGCTGTGGCAGTCGGCCTCGTCCGGAG
GGTCCAATTCCGGCAGTGATTTGTCGTGCGTCGCTAAGGGCGCTTGCAAG
GCAGCGGGGATAGCGGCCGCCCGGCGGCGAGCGAGGGGAAGAGCCTCGCC
GCCACTGAGCGGGGAGGAAGCGGCGGCGGGAGGTGGAGCGCGACTCAAGC
ACGACATACCCCGGGTACGCTCTTTTTTTTTATTATTCGTTGGGATACAG
CAGAGAGAACGGTTGGAATCCACCACATCACACCAAAGCTCCGCTCCTCT
CTCTCCCGTCTTTGAAAATAAATCATTTTTTTTTTCTCCGTTATACTGTG
TCATACACACCCTAACCGTGACAACCGCACGTGCCTGTGTCTGGTGTGTG
TGTGTGGTGTGTCTGCTATTACCTACTAGAGATTTATGCTGGTTGAGGTG
CGAGCCCTAATGTAGAGGAGATCGTCCACACCGACCCTTCACCAAGAAAG
AGATGCATGGGAATCTGTGTGTCAGTGTGTGTATGTTTTTTTTTTTTTAA
ATCGGTTGCGGCAAAACTTTCGGACACAAAATCTGATTTTGACCGTTCGG
CTAAATTCATATTGGAGTTGCATGTACCTAGCTGCCTAAAAGACCCGCGG
CGGTTCTCCGATCTGCCGATGATAGAGAGTGGTCTTGATCATGAACACAC
ACACCTTACGAGGATACACAGGGGGGGTGTGTGCTTCTTTTCTACTTCTT
TATCCAAGGGAGACGAAGAGATCCGGGGGGGAGACCCACACCAACCCACC
ACACACCCAATACCAGACCCGCTGACGGAATTGGTGACTTTCGGGAATTT
GAAACTCCGCCAGAGATCGTGCGCCGGATCCTCACGACAGAGCAGACTGA
AGCAGAAAAAAGTGCTGGGCTTTCGCGCCACACAGACAGAGAGGGCGGCG
GACGTACAAGGAAAGAAAAGCGAGATCTTTCGCGCACCGTCCGTCTCGTC
TTGCGGGGCTTGTCTGATTTCTCGCTCTGCCCCCACGATCTGCCGAACCA
AACGCGCTGTACCTACAATACATTAGATCCATATGGAGGACGCAGCCACC
GAACGCGCGCTGACTCTCACATAGAAGTAGTAGTTGTACATGTCAGATGC
ACTGCGTGTGTTGGTATGTTTTTATTTTTGATAAAAGCAGTTACCAAGCA
CACAGGACTACGAAGTACTAACGTACAACTGGACTACATAACAGCACTTT
CGTATTGGCCGGTATTTTGGGTACATTGGATACATCTGTAACAAACAGGT
ATCCCCATAGATACGTACATATACCGTACATAGGCGACACAAGATACTAC
CGCCTGGACAGATTTTCAAAGCTCGATTCGATTCCTCCTCAGCAAGAAGA
GGTGCCACGTGCCGAAAGAGGTGGTGTTGGGAACATCTAGTCGAGGGCTG
TCCGAACATGTGTCGTTTGGTTGCTGGCAGGCACCCTCCCTTCGTTACGG
AGTCATGGGGCTCTAGAATTCAGCCCAGCGGGTGTGGTATCTTGTGTCAC
CTATGTGTGTACGGTAGTCAGCCCACAGCAATGAGTACAACAGCTCTGAG
TGCAAGTCTAGATATTTGCCAGTATTTTACTTCTTGCGATGTTAGTAAAA
GCAACAGCCGCAACGACCTCACCGTCGACGAGGGAAAGAGACGGCTGAAC
CCTTCTCGCGACAAAAATCTCAGGCAGGCACCGCAGACGGGGGGAGTGGG
GGCCTTGGGGGAAAGGAACCCTTCTGTGTGACCAACCACGGTTCAGTACT
CTGGCAAGATGTTCTCGTGACAGGGAGCCCATCGAGCACTGGAAATAAAT
GTGAAAAAGAAAAAAAAAGAAAAACACAAGCCAAGCTTGCCTCACGGTGC
TTTCAAAAAATGTACTTGGTACCTACGTGTTTTCTTGGTACTTTTTTATC
CTCAACCGCAGTAAAAAGTTATGGAGGGCCAAGTAAATCGGGATCCTTGA
GTACGTGCACTGTACTACATTGTATGTAAATAGCACATTTTGAAAAATAA
AAATCAGTCCATTAAAACAAGGCAGAACATTTCAAGACACAGGGCTGCGC
GGTACATTAACAGTTGACAGAGTTCCAAGAGCATTTTTTTCTTTTTAATA
AATCAGGGATTCAAAAAGGGAACCTCCCCACTCATGAAACCGCGGTCTCT
GTCGTGGTAAAAAAAAAAACGCAGAATATAGTGAGATGTAAAATTTCGTA
CCTACGATAAATATTCAATACTTCGTATAAGTATTGGTCCGGTTGAGTAG
AAACAAACCTAAAACATTAAAAAGTTCCTCACCTTCTTTTGACTTTGGTC
ACACATCATCTGTGTACGCATGTGTATGTATGCACAACACATGCTTTGGT
CGGCGAGAACCCGACGCAGAACCCTCCGGCATTGTGGGCGGGTGTGGGAA
GCCTCGGCTTTCAAAACTGCTACTGTTGCAGGCAGCTCTCTTTCCTCTGC
CTGGCGTGGTATCTGATTTTCTAGTTTTTTTTTTATTTTTATTTCCCGGT
GGTTTGTCTTTGATTTTGATCGCGTGCTGGCCCTTCGGGTCCATTTTTAT
TTTCGTGTACCTTTTTTCAGGTATAAGTTATCCTGTGACACGGGAATTGA
CCGCATCAGATGTTGGATTGGGAGGTACGGACATAAGGGAGGTACTTACT
GGGTGGAGAGATCGGAACGGTTTTTAACCTTTTTAGTGCGCCAGCCCTCT
GAAAAAAAAAAATTTATGGCCGAAAAGTTGTCGCGCGTTCTGAGTGCCCA
CTGATTGCCCGAGAAACAACAGTCTCTCCATTTTGCAGCTGCGGAGCCCC
GACATCATTTGGAGAAAAATTGTATTGTATTCAAAAAGCAAGTCAAACTG
TCCAAACCGTTTGGAGAAAAAAAGTATACTGAAACGCAGTACAAACTGTA
TTAGCGTACTAGAAAATACAGACTTTTCTGCTGTAAAGACATGATGACGT
GAACCCTGAGCTGTGCGTGTGTAAACACACGTAGCAGCCCTCGCAACACA
CAATAGAGCGTGGCGGGCGACGCAACCCGCTCGAAGCTCAGCAGACGGCG
ATTCTCCAGAGTGACAGCACAGCGGTGTGTGTGCTGTGCGGCTCAAAACG
GCTGGACCGCCGGGGGCGCCGCGGAAAGTACGAATCACGGCGATTTTGTT
CCCGAGATTTTTTAGTTATCCGCAACAACTCAGTTGTGTCTCCAGAGCAC
TGCTGTGGAGCTGTGTGCAGGGCAAGTAGGGCAGGTACAGTGTTCATACC
CCTCGGCGGGGTGCCCCCAGGCCGTGTTACAGGTTCCAAGACTACGATTG
CAAGTCTACTTAGATCGAGAACAGTGGGCAAATTTTAGGTGTCACCATTT
TTTTCTCCAAACGGGCTTCCAGTGCTAAGAGGGTTAAGGCGTAGAAACAA
CAACAAAACCCTATGTACCTTCTGTTTTTTCGGTGCCGGCGAGACGCAAG
ACCCCCCCGGGAGTCAGTCTAGTATCGCCTGGCGCGTATGTATCACAGTT
GTGTTTTACTCTTTCTTGAGCGGCCTCGAGTGTGCCCTGTGTTTTCATGA
ATGTATACAAATGTCAGCAGTCTACGTCCGGTCTGTGAAAATATCGTTCC
AGAGGGATCTATCGTAGGCATACCATGTAACATACTAACCCCCCCCCCTT
TTTCCATCCCAAGATACACTCACACAAAACCCGTTTTCCATATAATATGT
CATACATGATACATATTATACAAGTTCGTTGGTGAAAATACTCTTCAGAG
GTCGGTTGCAGTGTAAACGTGAGCGCGTCAAGCATTGGCATGGTACAATG
TTTGTATATGGTGTAGGTGGGTGCTATTGTATCAGATCGCCATTTGCAGG
AGGCTGTACACTAGTGATTTTGGGTTATAGCAGTGCCCTGTTTTTTGTGT
GACCAAGGGCCCCCCACGGATGTTTTGGACTCGAGAGTTAAATGATGTGA
GAATCAACAAGAAAATAAATGCAAATTTATTCGTTCTCCCCCGTGAACGC
GTCTCTTCACAGAAACAATACTTGTGTCCCAACGGGAGGTCGTGCGAATA
AGCATATGTATGCAAGTATGTATTCATGGGGGTCTGCAGACGGCATGTTG
ATTTTCCTTGTTGGGGCAAAGACTTGTACCTACCTACTGCTGTGCTGTGA
TCGAGATTCTTGTCGATGCCTCCACATCTGTACTGCATGCAGTATTGCCG
GTATGTACCTGCGTACACAGTAGTAGGCACACACTTACACACCGTCAATT
CTTTGATTTCGACGTACACCTACCTACCTGTATACATGCCGCACACATGT
TTTGAGCCCCCCCCCGCGCTCGTTTCTCTCGTTTTTTTTTTTGTCGTGCC
GCGCACATCGCATCCGATCGATCGATTGATCGATTACATCGATCCATCAG
TCGAAATTGTCGCCGATCACCCCGGGTTCCTCGATATTTTCCCAAGACTC
AACGTTCTTCACACGCCAGCCAACCGCAAGGCCGAAGAGCGGGGGCTGGT
CGTCCTCGGCGATCAACTCCGCTCCGCCGCCGCCGATGATGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4940:6914..12007+

>mRNA_L-elsbetiae_contig4940.12904.1 ID=mRNA_L-elsbetiae_contig4940.12904.1|Name=mRNA_L-elsbetiae_contig4940.12904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig4940:6914..12007+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGTCGCGGTCCATGCTCCCGACCACGGATCTTCGCCTCGCTGGGC
GCCACCGGGAAGCCACAGCTCCGCCCTCCGGGTGTCACGGGAGAAGTTCA
AGCTGTCTCTCCCTTCCGGCGCGTTCAGGCACCCGACGAACCTTGCGGGC
AGCGCCGCGCCGCCGCCTGCCGTCGCGGCACCGGCAGCACCGGCACAGGC
AGCAACGCCGCCGCACCTTTGGATCGCCCCAGCGAACAAGCGGAAGCGGT
CCTCGCCGGGGAGAGGAGAGCCCACGCGAGTACCGCCGCAGTCACCCGTG
CGCCCGGTGGAGTGGTGGCGCCGGCCGCCGTCGCCCCTCCTGGTGCACAT
GCGGCCGCTGTGGCAGTCGGCCTCGTCCGGAGGGTCCAATTCCGGCAGTG
ATTTGTCGTGCGTCGCTAAGGGCGCTTGCAAGGCAGCGGGGATAGCGGCC
GCCCGGCGGCGAGCGAGGGGAAGAGCCTCGCCGCCACTGAGCGGGGAGGA
AGCGGCGGCGGGAGGTGGAGCGCGACTCAAGCACGACATACCCCGGATGC
CGGTCGCGGTCCATGCTCCCGACCACGGATCTTCGCCTCGCTGGGCGCCA
CCGGGAAGCCACAGCTCCGCCCTCCGGGTGTCACGGGAGAAGTTCAAGCT
GTCTCTCCCTTCCGGCGCGTTCAGGCACCCGACGAACCTTGCGGGCAGCG
CCGCGCCGCCGCCTGCCGTCGCGGCACCGGCAGCACCGGCACAGGCAGCA
ACGCCGCCGCACCTTTGGATCGCCCCAGCGAACAAGCGGAAGCGGTCCTC
GCCGGGGAGAGGAGAGCCCACGCGAGTACCGCCGCAGTCACCCGTGCGCC
CGGTGGAGTGGTGGCGCCGGCCGCCGTCGCCCCTCCTGGTGCACATGCGG
CCGCTGTGGCAGTCGGCCTCGTCCGGAGGGTCCAATTCCGGCAGTGATTT
GTCGTGCGTCGCTAAGGGCGCTTGCAAGGCAGCGGGGATAGCGGCCGCCC
GGCGGCGAGCGAGGGGAAGAGCCTCGCCGCCACTGAGCGGGGAGGAAGCG
GCGGCGGGAGGTGGAGCGCGACTCAAGCACGACATACCCCGGTCGAAATT
GTCGCCGATCACCCCGGGTTCCTCGATATTTTCCCAAGACTCAACGTTCT
TCACACGCCAGCCAACCGCAAGGCCGAAGAGCGGGGGCTGGTCGTCCTCG
GCGATCAACTCCGCTCCGCCGCCGCCGATGATGGCCTCGAAATTGTCGCC
GATCACCCCGGGTTCCTCGATATTTTCCCAAGACTCAACGTTCTTCACAC
GCCAGCCAACCGCAAGGCCGAAGAGCGGGGGCTGGTCGTCCTCGGCGATC
AACTCCGCTCCGCCGCCGCCGATGATGGCC
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