mRNA_L-elsbetiae_contig494.12902.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig494.12902.1
Unique NamemRNA_L-elsbetiae_contig494.12902.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig494.12902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig494contigL-elsbetiae_contig494:36209..36927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size720
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816492.3070025-CDS-L-elsbetiae_contig494:36208..365831622816492.3070025-CDS-L-elsbetiae_contig494:36208..36583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig494 36209..36583 +
1691683598.6471708-CDS-L-elsbetiae_contig494:36208..365831691683598.6471708-CDS-L-elsbetiae_contig494:36208..36583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig494 36209..36583 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816492.3182876-UTR-L-elsbetiae_contig494:36583..369271622816492.3182876-UTR-L-elsbetiae_contig494:36583..36927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig494 36584..36927 +
1691683598.6577585-UTR-L-elsbetiae_contig494:36583..369271691683598.6577585-UTR-L-elsbetiae_contig494:36583..36927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig494 36584..36927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig494.12902.1prot_L-elsbetiae_contig494.12902.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig494 36209..36583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig494.12902.1

>prot_L-elsbetiae_contig494.12902.1 ID=prot_L-elsbetiae_contig494.12902.1|Name=mRNA_L-elsbetiae_contig494.12902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
RWHPLCLLRLYFCVQPFYAKQRASPEVSAHRRECQLCGCSTCLLCVLFST
CLGRVLFFYVCLYVVGSECQPTAAEVHTNVVWHRYCFRSMALCLAFLPVV
QVCLRTQHTIVQRASPDVSVHRRE*
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mRNA from alignment at L-elsbetiae_contig494:36209..36927+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig494.12902.1 ID=mRNA_L-elsbetiae_contig494.12902.1|Name=mRNA_L-elsbetiae_contig494.12902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=719bp|location=Sequence derived from alignment at L-elsbetiae_contig494:36209..36927+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTGGCATCCACTTTGTTTGCTGCGTTTATATTTTTGCGTCCAACCATT
TTACGCTAAGCAACGGGCGTCCCCAGAGGTGTCCGCACACCGTCGGGAGT
GCCAACTGTGCGGCTGTAGTACATGTTTGCTTTGCGTGCTCTTCAGCACA
TGTTTGGGTCGCGTGCTCTTTTTTTACGTCTGTCTGTACGTTGTCGGGAG
TGAGTGTCAACCCACGGCGGCCGAAGTACATACAAATGTTGTGTGGCATA
GATACTGCTTCCGTTCGATGGCGCTCTGTTTAGCTTTTCTGCCTGTCGTC
CAAGTTTGTTTGCGCACTCAACACACGATAGTGCAACGAGCGTCCCCAGA
CGTGTCCGTACACCGTCGGGAGTAGTGCCAACTGTGCGGCGGCTGTAGTA
CATGTCTGCGTCACGTGCTCTTTTTTTATTTCACTGTTATTTTTATTCCA
GGACTATCTGCGTATAGTACGGCCATCTACGTGGCATGTACGTCTGCCAT
CCAAGTTTATCATCATACAGAGAGTCTCTAAAGTGGAAAGAAAATTGGTG
CGCGCGATGCCCCGGGCAGAGCAATCTAGGTAATAACTGCATTTATGTAG
GTACCACTTATCGACAGTTCCGCCGTGTCGGAGATGGGTGTGAAATGTGA
ATCCCCGTGTCAAGTCCATCATTCAAGACGCAAACGACGCCGCTTTTCTT
GAAAATATTTTCTTCAAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig494:36209..36927+

>mRNA_L-elsbetiae_contig494.12902.1 ID=mRNA_L-elsbetiae_contig494.12902.1|Name=mRNA_L-elsbetiae_contig494.12902.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig494:36209..36927+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTGGCATCCACTTTGTTTGCTGCGTTTATATTTTTGCGTCCAACCATT
TTACGCTAAGCAACGGGCGTCCCCAGAGGTGTCCGCACACCGTCGGGAGT
GCCAACTGTGCGGCTGTAGTACATGTTTGCTTTGCGTGCTCTTCAGCACA
TGTTTGGGTCGCGTGCTCTTTTTTTACGTCTGTCTGTACGTTGTCGGGAG
TGAGTGTCAACCCACGGCGGCCGAAGTACATACAAATGTTGTGTGGCATA
GATACTGCTTCCGTTCGATGGCGCTCTGTTTAGCTTTTCTGCCTGTCGTC
CAAGTTTGTTTGCGCACTCAACACACGATAGTGCAACGAGCGTCCCCAGA
CGTGTCCGTACACCGTCGGGAGTAGCGCTGGCATCCACTTTGTTTGCTGC
GTTTATATTTTTGCGTCCAACCATTTTACGCTAAGCAACGGGCGTCCCCA
GAGGTGTCCGCACACCGTCGGGAGTGCCAACTGTGCGGCTGTAGTACATG
TTTGCTTTGCGTGCTCTTCAGCACATGTTTGGGTCGCGTGCTCTTTTTTT
ACGTCTGTCTGTACGTTGTCGGGAGTGAGTGTCAACCCACGGCGGCCGAA
GTACATACAAATGTTGTGTGGCATAGATACTGCTTCCGTTCGATGGCGCT
CTGTTTAGCTTTTCTGCCTGTCGTCCAAGTTTGTTTGCGCACTCAACACA
CGATAGTGCAACGAGCGTCCCCAGACGTGTCCGTACACCGTCGGGAGTAG
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