mRNA_L-elsbetiae_contig4938.12898.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4938.12898.1
Unique NamemRNA_L-elsbetiae_contig4938.12898.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: D7FX88_ECTSI (PLCXc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX88_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 4.770e-109
Identity = 161/236 (68.22%), Postives = 192/236 (81.36%), Query Frame = 1
Query:    1 QSWSLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNPTETVVMFYQMKDLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLDGSTIPTLAEARGKVVLPTSMGRESQDEFDLGAFGAVSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEVVFEFTGGCLGVTMFDFVGEDAVTHVVAQQGTTGPTWDEPEE 708
            Q+WSLRTMLD GVRA+D+R+R K+DLSLVLEHGI+ELP+ FD DVRDVLASFL DNPTETVVMFYQM DL+             +AE+ L+ASM  +P LWLDG+ +PTL EARGK VLPT MG+E Q++F+L +F AV+ KKGL+R+FFLE G   PADGGPFRLN+ SGTG +V+PLTVAAGL  ++QGTNEVVFEF+GG LGV MFDFVGEDAV HVVAQQGT G +WD+P+E
Sbjct:  154 QAWSLRTMLDTGVRAIDVRIRRKSDLSLVLEHGIVELPYGFDVDVRDVLASFLTDNPTETVVMFYQMNDLAGEDSSGGV-----TAEDTLQASMSQYPDLWLDGAVVPTLEEARGKAVLPTDMGQEEQNDFNLSSFEAVATKKGLVRDFFLEGGGV-PADGGPFRLNYLSGTGTYVYPLTVAAGLKSVYQGTNEVVFEFSGGSLGVVMFDFVGEDAVAHVVAQQGTDGLSWDQPQE 383          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: UPI001F2D45DE (phosphatidylinositol-specific phospholipase C domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F2D45DE)

HSP 1 Score: 92.4 bits (228), Expect = 7.450e-18
Identity = 78/239 (32.64%), Postives = 109/239 (45.61%), Query Frame = 1
Query:    1 QSWSLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNPTETVVMFYQMKDLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLDGSTIPTLAEARGKVVLPTSMGRES----------QDEFDLGAFGAVSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAG---LGDIFQGTNEVVFE-FTGGCL---GVTMFDFVGEDAVTHVVA 666
            QS  LR+ LDAG+RA+DIR R+  D +  + HG++ L   FD DV      FL  NPTETVVM  + +             T     EA R      P LW  GS +PTL E RGK+V+       +          QD++ +     +  K   +R+    +   AP   G   +NF SG+    +PL VA G   LG   +G N+   +   GG +   GV M DF G   +  ++A
Sbjct:   69 QSLDLRSQLDAGIRALDIRCRH-IDNAFTIHHGVVYLHVNFD-DVLRTTIQFLNANPTETVVMRVKKEHTEENVTR-----TFAQTFEAYRDQPAYSPYLWR-GSHVPTLGEVRGKIVILDDFAGGAYGIPWGAISLQDDWTVSQLADIDDKWFKVRDHLARTNTGAP---GTLFVNFLSGSSALAYPLHVAGGINILGVQTRGVNDYAIDHLVGGNVQRAGVMMMDFPGAGLIDAILA 296          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: L7UB27_MYXSD (1-phosphatidylinositol phosphodiesterase n=4 Tax=Myxococcus TaxID=32 RepID=L7UB27_MYXSD)

HSP 1 Score: 89.7 bits (221), Expect = 6.430e-17
Identity = 79/241 (32.78%), Postives = 110/241 (45.64%), Query Frame = 1
Query:    1 QSWSLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNPTETVVMFYQMKDLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLDGSTIPTLAEARGKVVLPTSMGR----------ESQDEFDLGAFGAVSRKKGLIREFF--LESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAG---LGDIFQGTNE-VVFEFTGGCL---GVTMFDFVGEDAVTHVVA 666
            QS  LRT LDAG+RAVDIR R+  D    + HG++ L   FD DV      FL  NPTETVVM  + +             +     E  R   E +P LW  GS +PTL E RGK+V+    G           + QD++ +     +  K   +R      +SG+++        +NF SG+    +P  VA G   LG  ++G N+  V    GG     GV M DF G   +  ++A
Sbjct:   79 QSLDLRTQLDAGIRAVDIRCRHIGD-RFTIHHGVVYLHVNFD-DVLQTTIQFLQANPTETVVMRVKKEHTEEDVTR-----SFAQTFEWYRNRPEYNPYLWR-GSHVPTLGEVRGKIVVLDDFGGGTYGIPWGALDLQDDWTVSQLADIDDKWNKVRAHLDRTQSGSSSK-----LFVNFLSGSSAMAYPRHVAGGINILGIDYRGVNDYAVDHLVGGWAQRAGVMMMDFPGAGLIDAILA 306          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: UPI001CCE2E8E (phosphatidylinositol-specific phospholipase C n=1 Tax=Cystobacter gracilis TaxID=394092 RepID=UPI001CCE2E8E)

HSP 1 Score: 84.3 bits (207), Expect = 4.200e-15
Identity = 79/248 (31.85%), Postives = 117/248 (47.18%), Query Frame = 1
Query:    1 QSWSLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNPTETVVMFYQMKDLSSXXXXXXXXXTAPSAEE--ALRASMEAHPGLWLDGSTIPTLAEARGKVVLPTSMGRES----------------QDEFDLGAFGAVSRKKGLIREFF--LESGAAAPADGGPFRLNFFSGTGRH--VHPLTVAAGLGDIFQGTNEVVFEFT-GGCL---GVTMFDFVGEDAVTHVVA 666
            QS  LRT LDAG+RA+DIR R+  D    + HG +     FD DV      FL D+P+ETV+M  ++K+               S EE  A   S  A+      G+T+PTL + RGK+V+  + G  S                QDE+++     +  K   I   F   +SG+A+        +NF SG+     VHP TVA+G G +++G N+   E+   G +   G+ M DF G   +  ++A
Sbjct:   93 QSLPLRTQLDAGIRALDIRCRHIGD-RFAIHHGSVYQHANFD-DVLRTTIQFLKDHPSETVLM--KVKE------EYDAEGNTRSFEETFAWYQSQTAYKNFIWTGTTLPTLEQVRGKIVIVQAFGGGSYGVRWPSDGSNASFDVQDEWEVTWLWDIPTKWERILAQFEKTKSGSASV-----MYVNFLSGSSSTGGVHPYTVASGEGSVYRGMNDQALEYLMAGNMQRTGMVMMDFPGAGLIDAIIA 325          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: A0A840NKH7_9PSEU (1-phosphatidylinositol phosphodiesterase n=2 Tax=Saccharopolyspora TaxID=1835 RepID=A0A840NKH7_9PSEU)

HSP 1 Score: 79.7 bits (195), Expect = 7.990e-14
Identity = 74/252 (29.37%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   10 SLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLA---SFLVDNPTETVVMFYQMK---DLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLDGST--IPTLAEARGKVVLPT--------------------SMGRESQDEFDLGAFGAVSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEVVFEFTGGC----LGVTMFDFVGEDAVTHVVAQ 669
            +L   LDAGVRA+DIR+R K D    + HG     F  + +  DVLA   +FL  +P ET++M  + +   D+ S         TA   +    A  + H G   + ++  +PTL +ARGK+VL +                    + G   QDE+ +   G +  K   +R+ + E+ +A   D G    NF SG+    +P TV+ G G   +G N+   E   G      GV + DF G D +  V+++
Sbjct:   89 TLTAQLDAGVRAIDIRVR-KVDNQFTIHHGT----FYQNANFADVLAKADAFLAAHPGETILMRLKAECTGDIGSCTDENSDQDTATILDRY--ADEDPHGGRLQNPASDGMPTLGDARGKIVLGSLQEAQGGLVDGYGLSQFTNDNWGDYVQDEYQVPTIGDIDDKWNHVRDHWDETNSA---DSGEMFWNFTSGSSLGANPKTVSCGTGGT-RGVNDYALEHLAGNDVPRTGVVLMDFPGGDLIDEVISR 329          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: UPI00190A8AD6 (phosphatidylinositol-specific phospholipase C n=1 Tax=Saccharopolyspora sp. HNM0986 TaxID=2781241 RepID=UPI00190A8AD6)

HSP 1 Score: 79.3 bits (194), Expect = 1.110e-13
Identity = 75/254 (29.53%), Postives = 110/254 (43.31%), Query Frame = 1
Query:   10 SLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLAS---FLVDNPTETVVMFYQMKDLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWL-----DGSTIPTLAEARGKVVLPT--------------------SMGRESQDEFDLGAFGAVSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEVVFEFTGGC----LGVTMFDFVGEDAVTHVVAQQG 675
            +L   LDAG+RA+DIR+R K D    + HG     F    +  DVLA    FL  +P ETV++  + +                +AE   R       G +L     DG+  PTL  ARGK+VL                      + G   QDE+++   G + +K   +RE + ++ +A PA+     LNF SG+     P  VA G     +G N+   E  GG      GV + DF G D +  V+++ G
Sbjct:   89 TLTAQLDAGIRAIDIRVR-KVDNEFTVHHGT----FYQHANFADVLAKAGDFLAAHPGETVLLRLKAECTGEVGSCTDESSDLSTAEIVDRYQQNDPNGHYLYNPASDGT--PTLGAARGKIVLTALQEAQGGLVGGYGLEQFNDDNWGDYVQDEYEVPTVGDIEQKWNHVREHWDKTNSADPAE---MFLNFTSGSSLGADPKDVACGASGA-RGVNDHALEHLGGNDVPRTGVVLMDFPGSDLINEVISRNG 331          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: A0A1H3LWQ3_9PSEU (1-phosphatidylinositol phosphodiesterase n=3 Tax=Saccharopolyspora TaxID=1835 RepID=A0A1H3LWQ3_9PSEU)

HSP 1 Score: 75.9 bits (185), Expect = 2.060e-12
Identity = 75/251 (29.88%), Postives = 107/251 (42.63%), Query Frame = 1
Query:   10 SLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVL---ASFLVDNPTETVVMFYQMK---DLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLD--GSTIPTLAEARGKVVLPT--------------------SMGRESQDEFDLGAFGAVSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEVVFEFTGGC----LGVTMFDFVGEDAVTHVVA 666
            +L   L +G+RA+DIR+R + D    L HG    PF  + +  DVL     FL  +P E V+M  + +   +++S         TA   +       + + G  LD  G  +PTL +ARGK+VL T                    + G   QD +D+     +  K   +R+     G  A AD G   LNF SG+     P  VA G    F+G N+   E   G      GV M DF G D V  ++A
Sbjct:  103 TLGVQLQSGIRAIDIRVR-RYDDRFTLHHG----PFYQNANFSDVLREAGEFLAAHPGEAVLMRLKAECTGEMTSCTDENSQLDTAQILD--WYRDNDPNGGYLLDPAGGEMPTLGQARGKIVLATLQGAGGGLYEGRGLGQFNNDTWGEYVQDAYDVPTLFDIDDKWFKVRDHL---GKTAAADSGRMFLNFSSGSSPAAFPNAVACGASG-FRGVNDYALEHLNGTDLPRTGVIMMDFPGADLVNAIIA 342          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: A0A2T4VNY9_VITXG (1-phosphatidylinositol phosphodiesterase n=2 Tax=Vitiosangium sp. (strain GDMCC 1.1324) TaxID=2138576 RepID=A0A2T4VNY9_VITXG)

HSP 1 Score: 73.2 bits (178), Expect = 2.980e-11
Identity = 71/240 (29.58%), Postives = 102/240 (42.50%), Query Frame = 1
Query:    1 QSWSLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNPTETVVMFYQMKDLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLDGSTIPTLAEARGKVVLPTSMGRESQDEFDLGAFGA---------------VSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEVVFEFTGGCL---GVTMFDFVGEDAVTHVVA 666
            QS  LR  LDAG+R +DIR R+  D    + H    +   FD DV      FL DNPTETV+M  + K+ +          T     E  R      P +W  G+T+PTL E RGK+V+         D+F  GA+G                 + K  L+R     + + +P       +NF S +G    P  VA G+ +      + +    GG +   GV M DF G   +  ++A
Sbjct:   93 QSLELRPQLDAGIRVLDIRARHIGD-RFTIHHDAYYVMANFD-DVLGTAIQFLRDNPTETVLMRVK-KEYNEESTTRSFAATF----EWYRNQAAYSPYIWR-GTTVPTLGEVRGKIVI--------LDDFAGGAYGISWDSLNKQDAWTETNTTNKWNLVRTHLEATNSGSP---NTLYVNFLSASGAGGTPKGVAGGVNE------QALHYLVGGNVVRTGVLMMDFPGAGLIDAIIA 307          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: UPI0009E30A81 (phosphatidylinositol-specific phospholipase C n=1 Tax=Allosalinactinospora lopnorensis TaxID=1352348 RepID=UPI0009E30A81)

HSP 1 Score: 72.8 bits (177), Expect = 3.820e-11
Identity = 74/246 (30.08%), Postives = 106/246 (43.09%), Query Frame = 1
Query:    1 QSWSLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNPTETVVMF----YQMKD--LSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLDGSTIPTLAEARGKVVLPTSMGRES--------------QDEFDLGAFGAVSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEV----VFEFTGGCLGVTMFDFVGEDAVTHVVA 666
            Q   L   L AG+RA+DIR R+  D+   + HG + L   F   +RD    FL ++PTETV+M     Y+ ++   S            P   +  R  + +  G   DG  IPTL EARGK+VL      +               QDE+ +     +  K    R  F ++G+    D     +NF SG G   +P  VA G+  + +G N+     +FE      GV M D+ G   V  VVA
Sbjct:   96 QDSGLPEQLGAGIRALDIRARHHRDV-FPIHHGRVYLNANFTDVLRDT-TDFLKEHPTETVLMRLKEEYRAEENTRSFAETLEWYLNDNPDTADLAREHLWSPGG---DGRRIPTLGEARGKIVLLQDFNGDGAVYGPRWGGPAMDIQDEYRVPTIFDIDDKWHKARAHFEKTGSG---DSEALSVNFLSGAGVGAYPKEVARGVLGL-RGVNDFALQYLFERNVSRTGVVMMDYPGAGLVDAVVA 332          
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Match: A0A250IIL0_9DELT (1-phosphatidylinositol phosphodiesterase n=1 Tax=Melittangium boletus DSM 14713 TaxID=1294270 RepID=A0A250IIL0_9DELT)

HSP 1 Score: 70.5 bits (171), Expect = 2.440e-10
Identity = 73/241 (30.29%), Postives = 97/241 (40.25%), Query Frame = 1
Query:    1 QSWSLRTMLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNPTETVVMFYQMKDLSSXXXXXXXXXTAPSAEEALRASMEAHPGLWLDGSTIPTLAEARGKVVLPTSMGRESQDEFDLGAFGA---------------VSRKKGLIREFFLESGAAAPADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEVVFEFTGGC----LGVTMFDFVGEDAVTHVVA 666
            Q  +LR  LDAGVRAVDIR R+  D    + HG   L   FD  V      FL DNPTETV+M  + +             +  +  E  R      P +W  G+ +PTL EARGK+V+         D+F+ G  G                 + K  L+R   + +      D     LNF S  G    P    AG+ D     NE    +  G      GV M DF G   +  ++A
Sbjct:   89 QGLNLRPQLDAGVRAVDIRARHIGD-RFTIHHGAYHLMTNFDY-VLGTTVQFLKDNPTETVLMRVKKEHTEEGNTR-----SFAATFEWYRDQAAYSPYIWR-GTHVPTLGEARGKIVI--------LDDFEGGDHGINWNSIRLQDAWEETNTTTKWNLVRNHLVTTNTG---DTNALYLNFLSAAGAGGTP----AGIAD---DVNEQALHYLMGSNVQRTGVLMMDFPGAGLIDAIIA 303          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4938.12898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX88_ECTSI4.770e-10968.22PLCXc domain-containing protein n=2 Tax=Ectocarpus... [more]
UPI001F2D45DE7.450e-1832.64phosphatidylinositol-specific phospholipase C doma... [more]
L7UB27_MYXSD6.430e-1732.781-phosphatidylinositol phosphodiesterase n=4 Tax=M... [more]
UPI001CCE2E8E4.200e-1531.85phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A840NKH7_9PSEU7.990e-1429.371-phosphatidylinositol phosphodiesterase n=2 Tax=S... [more]
UPI00190A8AD61.110e-1329.53phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A1H3LWQ3_9PSEU2.060e-1229.881-phosphatidylinositol phosphodiesterase n=3 Tax=S... [more]
A0A2T4VNY9_VITXG2.980e-1129.581-phosphatidylinositol phosphodiesterase n=2 Tax=V... [more]
UPI0009E30A813.820e-1130.08phosphatidylinositol-specific phospholipase C n=1 ... [more]
A0A250IIL0_9DELT2.440e-1030.291-phosphatidylinositol phosphodiesterase n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4938contigL-elsbetiae_contig4938:166..1794 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue5.2e-13
Seed eggNOG ortholog1278073.MYSTI_03759
KEGG rclassRC00017,RC00425
KEGG koko:K01771
KEGG ReactionR03332
KEGG Pathwayko00562,map00562
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phospholipase C, catalytic domain (part); domain X
EggNOG OGs1N0QX@1224,2X4XX@28221,2YZTE@29,439M2@68525,COG0823@1,COG0823@2
EC4.6.1.13
COG Functional cat.U
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionPLC-like phosphodiesterase, TIM beta/alpha-barrel domain
Ec32 orthologEc-26_003950.1
Exons2
Model size720
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4938.12898.1prot_L-elsbetiae_contig4938.12898.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4938 187..1794 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816492.095808-UTR-L-elsbetiae_contig4938:165..1861622816492.095808-UTR-L-elsbetiae_contig4938:165..186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4938 166..186 +
1691683598.4607334-UTR-L-elsbetiae_contig4938:165..1861691683598.4607334-UTR-L-elsbetiae_contig4938:165..186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4938 166..186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816492.1074445-CDS-L-elsbetiae_contig4938:186..8371622816492.1074445-CDS-L-elsbetiae_contig4938:186..837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4938 187..837 +
1691683598.4913468-CDS-L-elsbetiae_contig4938:186..8371691683598.4913468-CDS-L-elsbetiae_contig4938:186..837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4938 187..837 +
1622816492.117423-CDS-L-elsbetiae_contig4938:1746..17941622816492.117423-CDS-L-elsbetiae_contig4938:1746..1794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4938 1747..1794 +
1691683598.5060954-CDS-L-elsbetiae_contig4938:1746..17941691683598.5060954-CDS-L-elsbetiae_contig4938:1746..1794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4938 1747..1794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4938.12898.1

>prot_L-elsbetiae_contig4938.12898.1 ID=prot_L-elsbetiae_contig4938.12898.1|Name=mRNA_L-elsbetiae_contig4938.12898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=233bp
MLDAGVRAVDIRLRYKADLSLVLEHGIIELPFAFDGDVRDVLASFLVDNP
TETVVMFYQMKDLSSSSSSAAAAATAPSAEEALRASMEAHPGLWLDGSTI
PTLAEARGKVVLPTSMGRESQDEFDLGAFGAVSRKKGLIREFFLESGAAA
PADGGPFRLNFFSGTGRHVHPLTVAAGLGDIFQGTNEVVFEFTGGCLGVT
MFDFVGEDAVTHVVAQQGTTGPTWDEPEESGG*
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mRNA from alignment at L-elsbetiae_contig4938:166..1794+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4938.12898.1 ID=mRNA_L-elsbetiae_contig4938.12898.1|Name=mRNA_L-elsbetiae_contig4938.12898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1629bp|location=Sequence derived from alignment at L-elsbetiae_contig4938:166..1794+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTCGTGGTCGCTCCGGACGATGCTCGACGCCGGGGTCCGCGCGGTGGA CATCCGACTCCGCTACAAGGCGGACCTCTCGCTCGTCCTCGAGCACGGCA TCATCGAGCTCCCCTTCGCCTTCGACGGGGACGTGCGCGACGTCCTGGCG TCCTTCCTCGTCGACAACCCCACCGAGACCGTCGTCATGTTCTACCAGAT GAAGGACCTCTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGCGACAGCGC CGTCGGCGGAGGAAGCCCTCCGGGCCTCGATGGAGGCGCACCCGGGCCTG TGGCTCGACGGGTCGACCATCCCGACCCTGGCGGAGGCGCGCGGGAAGGT CGTCCTGCCCACGAGCATGGGGCGCGAGTCGCAGGACGAGTTCGACCTCG GCGCCTTCGGCGCGGTCTCGAGGAAGAAGGGCCTGATCCGGGAGTTCTTC CTCGAGAGCGGCGCCGCCGCTCCAGCCGACGGCGGGCCCTTCCGCCTCAA CTTCTTCTCGGGCACGGGGAGGCACGTGCACCCCCTGACGGTCGCCGCGG GCCTCGGGGACATCTTCCAGGGCACGAACGAGGTGGTGTTTGAGTTCACG GGGGGGTGCCTGGGCGTCACCATGTTCGACTTCGTCGGCGAGGACGCCGT CACGCACGTCGTGGCGCAGCAGGTGTGGTGTGGTGTAAACCGTCTTCGCA AAGAATGCCTGTCTACGTATGTATACAGGAGATTATAGACAGGGGTTCCG TAACCCTAACCCTAACCCTAACCCCAAGGGTAGTTAACCCCAAGGGTAGT TAGTTAGTCCACGCAGGTTTTTGTTCGGCGAAACATATGGGATAAAGTAT GGAATCGGGGAATGTCTGGGGGGTCGGTGGTTAGGGTTAGGGTTACGGAA CCCCTACTACTCTATTTCACATATAAACCAATATTATCCCCGTTTTTTCT CGCGAAGGCAGTCCAACCCCAAACCGACCCCCCATTAGCCATTTCCGTAT TTTTATCCCGTACCGTGTGATTTGTTCCAGTAAAACCTGCGAAGGATACT GGTGGGGGGGGGGGGGGGGGGGGGGGGGGTGTGGTGTCGTGCGCCGCGTG AAAAACGGTGACTTATTTTAGTGCCGGTGCTGCTGCTATGTATGTGTGTC CAAAAGTGTGTGCTGTTTGCTGGGTGGTGCTTGACGGTGTTACAACAGTC GCCTGTAGTTTCTGCGATCACATACATACGCCCCCGTTCGGATACCTACA TAGGCTATCTACAAAGGGTAGGAATAGGGTGGGGCTAGAACAAGACTAAG GAAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTT TGGGGACAGTCCCCCCAAGTGGAGACGTGTTCTACACCTTGCGGTGTACT TAGAGGTACTTAGGGAAGTAATATTGTGCGGGAATACGGTAGTTTTTTCA AAGACGGAAGCGCCCACTAGCTTGAAACCCCTTTTTCCCCCTTCCTTCCT TCCTTCCAGCCCCGTCATCCCTCTTCCCTCCCCCCACGCTGTGTTTTTCG TTGGACGGACTTCGGTTCGCTTGCTTTTTAGGGAACCACTGGTCCAACTT GGGACGAACCAGAGGAGTCGGGGGGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4938:166..1794+

>mRNA_L-elsbetiae_contig4938.12898.1 ID=mRNA_L-elsbetiae_contig4938.12898.1|Name=mRNA_L-elsbetiae_contig4938.12898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig4938:166..1794+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGACGCCGGGGTCCGCGCGGTGGACATCCGACTCCGCTACAAGGC
GGACCTCTCGCTCGTCCTCGAGCACGGCATCATCGAGCTCCCCTTCGCCT
TCGACGGGGACGTGCGCGACGTCCTGGCGTCCTTCCTCGTCGACAACCCC
ACCGAGACCGTCGTCATGTTCTACCAGATGAAGGACCTCTCCTCCTCCTC
CTCCTCCGCCGCCGCCGCCGCGACAGCGCCGTCGGCGGAGGAAGCCCTCC
GGGCCTCGATGGAGGCGCACCCGGGCCTGTGGCTCGACGGGTCGACCATC
CCGACCCTGGCGGAGGCGCGCGGGAAGGTCGTCCTGCCCACGAGCATGGG
GCGCGAGTCGCAGGACGAGTTCGACCTCGGCGCCTTCGGCGCGGTCTCGA
GGAAGAAGGGCCTGATCCGGGAGTTCTTCCTCGAGAGCGGCGCCGCCGCT
CCAGCCGACGGCGGGCCCTTCCGCCTCAACTTCTTCTCGGGCACGGGGAG
GCACGTGCACCCCCTGACGGTCGCCGCGGGCCTCGGGGACATCTTCCAGG
GCACGAACGAGGTGGTGTTTGAGTTCACGGGGGGGTGCCTGGGCGTCACC
ATGTTCGACTTCGTCGGCGAGGACGCCGTCACGCACGTCGTGGCGCAGCA
GATGCTCGACGCCGGGGTCCGCGCGGTGGACATCCGACTCCGCTACAAGG
CGGACCTCTCGCTCGTCCTCGAGCACGGCATCATCGAGCTCCCCTTCGCC
TTCGACGGGGACGTGCGCGACGTCCTGGCGTCCTTCCTCGTCGACAACCC
CACCGAGACCGTCGTCATGTTCTACCAGATGAAGGACCTCTCCTCCTCCT
CCTCCTCCGCCGCCGCCGCCGCGACAGCGCCGTCGGCGGAGGAAGCCCTC
CGGGCCTCGATGGAGGCGCACCCGGGCCTGTGGCTCGACGGGTCGACCAT
CCCGACCCTGGCGGAGGCGCGCGGGAAGGTCGTCCTGCCCACGAGCATGG
GGCGCGAGTCGCAGGACGAGTTCGACCTCGGCGCCTTCGGCGCGGTCTCG
AGGAAGAAGGGCCTGATCCGGGAGTTCTTCCTCGAGAGCGGCGCCGCCGC
TCCAGCCGACGGCGGGCCCTTCCGCCTCAACTTCTTCTCGGGCACGGGGA
GGCACGTGCACCCCCTGACGGTCGCCGCGGGCCTCGGGGACATCTTCCAG
GGCACGAACGAGGTGGTGTTTGAGTTCACGGGGGGGTGCCTGGGCGTCAC
CATGTTCGACTTCGTCGGCGAGGACGCCGTCACGCACGTCGTGGCGCAGC
AGGGAACCACTGGTCCAACTTGGGACGAACCAGAGGAGTCGGGGGGATAG
GGAACCACTGGTCCAACTTGGGACGAACCAGAGGAGTCGGGGGGATAG
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